RNA id: XM_034301649.1


Basic Information

Item Value
RNA id XM_034301649.1
length 2990
RNA type mRNA
GC content 0.45
exon number 12
gene id u2af2b
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12399540 ~ 12414792 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCGCAAACGCAGTGCACTTCACTGTTCCACACGGAGCCATTTTGGATCCAGCCACATTTCACTTCCGCCTGCGCAGAGAGAAACGAACCTGCTGTAAACTAGCTACGCTGAGTCGCTCGCCTAGCTGGTATTGTATTTGTGCGGAGGAttattcattaacattttatactttatttcaGCGTACACACAAGAAAGAAATTCAGttatatattcacatatttgtCTGTTATTTAGCTATAAAGGGTGGAAGGTTGTTTTTGCGCGAGCTTCGAATCAGCTAGTCAGtcttgttagctagttagctaacttagcagaacaggaaaaaaaaaaacaacaacacctCAATATAACAACGCGACTTAGAGGAAGTTTCTGTGCAGCTAATTGTGCATGCAGCTTTAATAAACCCAGGTTTCTCCGTTTGGCCGAATGTTTCATAACAGACAAAGACATCTCACTTTTGAAGTAAGATAACGTGGTCGGCTAAGCGTTCCCAGGTTTCACTCGCTCCATTCATCCGCTGCGAATTCAAAATGTCGGAGTTTGACGAATTTGAGAGACAACTGACCGAAAACAAACAAGGTGACGGCGTTAACGGCCATGAGCGGGACAAAGAGAATAGGCACAGGCGTCGGAGTGGCTCGCGTAGCCGTAGTCGTgaaaggaagaggaggagcaggGAGAGGAGGAGCAGGGAGCGACGCAGCAGCAGCAAAGATCGCAGGCATAGACGCAGTCGTTCCCCACcgagggagaagaagaagaaaatcaaaaaGTACTGGGATGTTCCTCCTCCAGGCTTTGAGCACATCACACCGATGCAGTACAAGGCCATGCAGGCTGCTGGGCAGATTCCTGCCACAGCACTGCTGCCCACTATGACTCCAGATGGACTGGCAGTTACACCTACACCAGTGCCTGTAGTAGGCAGCCAGATGACCCGCCAGGCTCGGAGGCTGTATGTGGGCAACATCCCCTTCGGCATCACAGAGGAATCGATGATGGACTTCTTCAACGCTCAAATGAGACTAGGGGGTCTTATTCAGGCTCCAGGAAACCCCGTCCTTGCTGTCCAGATTAACCAGGATAAGAACTTTGCCTTCCTTGAGTTGCGCTCAGTGGACGAGACCACACAGGCAATGGCGTTTGATGGCATCATATTCCAAGGCCAGAGTCTGAAGATCCGCCGGCCACACGATTACCAGCCGTTGCCAGGCATGAGCGAGAACCCCAGTGTGTATGTGCCAGgAGTGGTGTCCACTGTAGTCCCTGACTCTGCTCATAAGCTTTTTATTGGAGGCCTGCCCAACTATCTCAGTGACGACCAGgtaAAAGAGTTGTTGACGTCCTTTGGGCCTTTAAAAGCATTCAACCTAGTGAAGGACAGTGCCACAGGGCTCTCCAAAGGCTATGCCTTCTGCGAATATGTTGATGTCAATCTTAACGATCAGGCTATTGCAGGACTAAATGGGATGCAGTTAGGGGATAAGAAGCTCCTGGTCCAGAGAGCAAGTGTAGGAGCCAAGAACGCAACTCTGACAAGCATAAACGAGACCCCGGTGACGCTTCAGGTACCAGGCCTGATGAACAGCTCTGTGAATCAGATGGGTGGAATTCCCACTGAGGTTCTGTGCCTGATGAACATGGTGGCTCCAGAGGAACTTCTGGATGATGACGAGTACGAAGAGATTATGGAGGACGTCAGGGACGAGTGCTCCAAATATGGTCAGGTCAAGAGCATCGAGATCCCTCGCCCTGTCGACGGCCTGGAGATCCCTGGAACTGGAAAGATCTTCGTGGAGTTCACAACAGTTTTTGACTCCCAGAAAGCCATGCAAGCCTTGACGGGGAGGAAGTTTGCCAACAGAGTGGTTGTGACCAAATACTGCGACCCTGATGCCTACCACCGCCGAGATTTTGGCTAGATCAGAATGCATGGGAGCGGAGAGAAGGGGAGTGTGCGGCGCAGGAGAAACCAGATGAAAGGCTGTATTATGACCGAGGAGTGAATGGAGGGATGGCAAAAGGGGGATCTTTTCTTGTAGTTCAAGGTGGCATTtcatgttcagtttttttttttttttttttttttttaaaagcagaaatAGCTTTGGCGCAATGagtttgcattttaataaagcGGGGATTATTGAGTTTATTAATTTGTCTAATTGCATATTGAACAAAATTGTTTAGAAGAgtgggtggggtgggggggagGAATTACAGTACATAATGCTCTAAAAGGACAGAATGTTGTCAATGGCATGAGTGAAGGAAATAAATTGCTTCCTTTCACTTTACTTTGATCCCTCTATTGTCATACAATTTTGCTGTTGGTGACCTAACCACCTTGATGCTACTACACTCTCaatttttcagtctttttatCTCCGAAATTAGTTTAGTTCAACTGTGTGTTAGTTTCTATCCAGCTCTGTCTGTCCTGTTCCCAGTACACGACTGCCTCTTATATTGGTAATGTAACTTCAAGTCTAGCATGGCACCTTTGTGTCTCTCTATGTGTGAACATAACCCTCTTTTGATAATAAACTTAGTGAGAATTTGAAAAAGTTGATCAGTGGACTGCATTCTTCTTGGTTGattacagtaaatacagtaatTTACATGTTATATTAAAAGAAGAAATGTCTTTTAGCTATTCACTTGAAAGATAAGAGCTCCAAATTCAAACTTTTCCCCTAAAACTGCAGTATATGATAGCTGTAATGGATTTGTTCTGTATCTCATATTTTTGTTCAAAAATACTTTTCATACTATTGTAATGAAGTGATGTCCAGACATTGCTTATTTGAAAccagacagagaaaaatatgGATTCTGACCTGACAGTCTtagtataatgaaataaataatagactTGCTTGATTTCCACTTTTACTTTATGTAAGTAGTTTAATGTACGTTTTAAGCACACTGTAGTATATGCTTTAACAATACTGTGTAAATAAAGATCTCACAGATTTCA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0046660 female sex differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12837 U2AF2; splicing factor U2AF 65 kDa subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479803 lncRNA downstream 124038 12275268 ~ 12275502 (-) True G404421
TU479760 lncRNA downstream 251877 12146083 ~ 12147663 (-) False grin2da
TU479664 lncRNA downstream 273700 12125457 ~ 12125840 (-) True G404282
TU479624 lncRNA downstream 399030 12000266 ~ 12000510 (-) True G404243
TU479622 lncRNA downstream 402070 11997070 ~ 11997470 (-) True G404241
TU480108 lncRNA upstream 99694 12514471 ~ 12515210 (-) True G404667
TU480079 lncRNA upstream 121570 12536347 ~ 12553725 (-) False fam131ba
TU480124 lncRNA upstream 160303 12575080 ~ 12577284 (-) True G404681
TU480125 lncRNA upstream 161755 12576532 ~ 12578806 (-) True G404682
TU480131 lncRNA upstream 174495 12589272 ~ 12591533 (-) True G404687
XM_026928119.2 mRNA downstream 8178 12355242 ~ 12391362 (-) True cnot3b
XM_026928121.2 mRNA downstream 8178 12356261 ~ 12391362 (-) False cnot3b
XM_026928120.2 mRNA downstream 8178 12356261 ~ 12391362 (-) False cnot3b
XM_034301807.1 mRNA downstream 50968 12329158 ~ 12348572 (-) False shisa7b
XM_026927850.2 mRNA upstream 5726 12420503 ~ 12427389 (-) True ccdc106b
XM_034301702.1 mRNA upstream 20195 12434972 ~ 12440347 (-) False si:ch211-232m10.6
XM_026928356.2 mRNA upstream 20195 12434972 ~ 12440347 (-) False si:ch211-232m10.6
XM_026928355.2 mRNA upstream 20195 12434972 ~ 12440347 (-) True si:ch211-232m10.6
XM_026927862.2 mRNA upstream 32961 12447738 ~ 12462356 (-) True zgc:194578
trnay-gua_21 other downstream 575577 11823876 ~ 11823963 (-) True trnay-gua_21
trnay-gua_20 other downstream 577076 11822377 ~ 11822464 (-) True trnay-gua_20
trnay-gua_19 other downstream 578576 11820877 ~ 11820964 (-) True trnay-gua_19
trnay-gua_18 other downstream 580069 11819384 ~ 11819471 (-) True trnay-gua_18
trnay-gua_17 other downstream 581566 11817887 ~ 11817974 (-) True trnay-gua_17
TU480085 other upstream 16218 12430995 ~ 12483898 (-) True G404644
trnav-cac_22 other upstream 155687 12570464 ~ 12570536 (-) True trnav-cac_22
trnav-cac_23 other upstream 156816 12571593 ~ 12571666 (-) True trnav-cac_23
trnav-cac_24 other upstream 158822 12573599 ~ 12573671 (-) True trnav-cac_24
trnav-aac_24 other upstream 159963 12574740 ~ 12574815 (-) True trnav-aac_24

Expression Profile