RNA id: XM_034301670.1


Basic Information

Item Value
RNA id XM_034301670.1
length 3260
RNA type mRNA
GC content 0.49
exon number 4
gene id pygo2
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13729127 ~ 13734761 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCCAGTGTAAGCGTCTCGCCCGGCTGTCCCTCTTTGTCCGGCAGCGACTGTAGGCCGTAATAGTCATGGCCAATTTCGCGTTTGAGGATAAATTTTAATTCAGGAGAATCTCAGTCCTGAGTAAGGTTAGTCTGTTCACTGCGAAACAAAACCCCAGATGAAGGCAGATCCGCTACCTGCTCAGTACTCTGTGAGGGATTCTGCGATCTTAGCTGTCAGCCTGTAGTGCTGCGCTGCCGTTACTTGGACCTGAGGACACGTCcgtctgcttcttttttttatgtgtgaacGGTGACATGGCAGCGCGCCGCCGATCGTTTTAATGGCTGCCGAATCGGGGAGACTGCAGGCGGGACAAGGTCAAGGGAAGCGTGGCAAAGGTTCCCAGATGAAAAGcccagagaaaaagaagaggaagtcTAGCACTCAGGGGGCAAGTTTCTCCCACCTCTCTGAGTTTGCGCCTCCTCCAACCCCTATGGTAGACCATCTTGTGGCCTCAAACCCATTTGATGATGACTTTGGCCCGCCGTCACGTCCCGCTGGAGCCGGGGGTCCGGGAAGCGCACCTTTTCTGCCAAGCCCAGGGGCTGGTGGCGGAGGTGGAGGATATGGAGGACCAGGTAGAATGGGAGGGGGCATGGCCTACATGGGTGGCCCTGGAGGACCAGGTGGTGGACAGCCTGGACGAAGACCCCCTTTCGGACCTCCACCACCCAACACAGGACCACATCACCCAATTGGATTTGGAGGAATGCCTGGATttggaggtggtggaggaggtggtggtggtggaggtggtttTCCTCCAGGGGGACCATCACAATTTAACATGCCACCTAATTTCAGCCCTCCTATGCACCCAGGGCAAGGTTTTAACCCTATACTGTCACCTGGTGGAATGGGTGGTGGTCCTGGAGGTGGTGGTCCTCCTCATCCACGCTTTGGGATGCAGCAGCCTCAGCATGGACAGGGTGGTCATCCTTTCAACAGTCCTCCGATGCCTGGGGGCCCTCGTGGTCCTCCCCATGGCCCAATGAATCCGATGGGTGGCATGCCGACTGGAATGAATATGATGGGTGGTATGGGGGGTGGAATGGGTGGAGGTAATATGGTAGGTGGCCACGCAGGGTTGCCCCCCCAGGGATCGTTCCCTCCCTCGCAAGATGGCCCCTATCCTGGGCCAGGCACTCCTGGTAGTGAAGAAGGCAAAAACTTTGTTGGTGGACCAGGCGGTGGTCCACCAGGTCCACCTCAGCAGCCACCAAACCTCAACCCATCTGGCCCTCCGTCCAACAATGCCACCCCAGGTCCATCCCCAGCTTCTGGACCTCCACAGACTGGGGGAGGGTTTCCTGGTCACCCTGATGTTCAGCAATCAACACCCAACACACCTGGGCAACCTTCATCAGCACCTCCTCCACCCAATCCTAATTCCTCCCCTACTGGTCCACTAAACGGTCCACAACCCCAGCAAGTCCCACCAAATCAGCACACTCCAGTTAACTCCGCAAGTGGCCCTGCTCCCAACACTCCATCCAATCAGCAGCAGCCAACGCCACCCAACTCCAACCCAGGCTCTGCCCCATACAATCAGCAGAACAGTGCTCCTGGTGGTGGACCTATGGCAAGCCAGCCACCTAATACCAATCAAAACAATCTAAACAACACCGGTGGcagtaaccctaaccctccATCTAACTCAGCTTCCACACCTAACACGCAGTCTCCACTTCCCACTGGCCAAGCTCCACCTTCGGTTGGTCCAGGTTCTGGACCGCCAAAACTGGGAAGTGGCATGGTGTTCCATTGTGGCTTCTGCTTGTTAGAGGTACATGATGACCAGGAGGCCATTCTTTGTGAGGCATCATGCCAACGCTGGTTCCACAGAGACTGCACAGGCCTGACTGAGCCTGCATATGGCCTGTTAACCAGAGAGAGTGCTGCGGTATGGGCTTGCGATTTCTGCCTCAAGACCAAGGAGATTCAGGCAGTATATGTACGCCAGAGCCTGGGACAGCTGGTGGCTGCCAATGAAGGCTAAGCGACCAGGAACAGCAAGTAGGCTAAGGAAAGTGGACAGAGTAGGAAATGTAGGGAAACCAATGGATGGAACACGAATGGAAAATGTGGACTCTGTACTTCCTGTGTTGAGTGCTCTTGCAAACCACACAAGCACTTTTAAAGCTTACATTTCTTGATTGGGGGAAGTTTGAGCATGGTTTTTCAAGAACACTATGATAACCAGTAATGAATCATATTACCAGTACGATTTGGCTCGCATTTAAGGGaaagaaaatatttctgttattgCTTCAATTGAACACATGGTTGTAAAAGTGCAGAAGaatttttgtaatattgtcgtatttaaaagtaattaacTAATATCCAGTATAGATTCCAGTCAGAGTAAACTTTCCCTCCAAAAGCAGCTTGTCTACCAGCAAAGCACTGACAACAACTCACTACCTCACAGATTTAACAGTTGTACACATGCTTTGGCACAGATTGACTGCTATCTAAAGCTAGAGTGAGGTCTCCCTACACCACCTCCTCTAGTCCATGGTTTCCATTTCAGTGTGTCCAAAGGAAACAAGTACCTTTCTTCACCTTTGAGAGAAATGGTGTATACACATGTATATAATGAATATTAGTCACAATTTTTCTGTTCCTTTTGGGAAGAGTTGTCCTGTAAACAGAAAGATCCCTGACATTTAATCATGCTGTTGCCAAGTTTTTGTCTGAATATACATTCATtcaccatttttatttaaaactgaacacTGAGAGGTCAGTGTGGATGGTTGGCTACATAGGCAGTAGTGCTACATAACCATATCAGATGTGTATAGTCTTTGGATTGCATGTGAACCAAATGCAGTAATTTGTCCACTGTTTGTAATGTATTGTTTCTTTCTAGGCCTCAGTGAGGGGTGTGAAGTAGACCAAATAACAGAATGAAATCAAATCAGCTCATGTTTCTGTTGCTGAAAAAGATGTTATTTTCTTGTTTCCACATTTCTGTCCAGGTTGCCTTTTTTTCTTAGCAATTATCCATTTTTGTACTGATGTCTAGTGTGCAGACTCTAGTGCCCTCTGTTGTCCAGAATTGTGCAGTAAAGTTTGAGGTGGGCAGAAGTAAGGTAATGTTGTGAAAGAAGTAAaggaaaatgtatttgtatttttacttgCCATTTTTTGTAGACTATTGTTGCATTAAATTTGGGTTTGACTACCCAGTAAACCAAGTCATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480913 lncRNA downstream 22585 13655405 ~ 13706542 (-) True G405368
TU480893 lncRNA downstream 123235 13601027 ~ 13605892 (-) True G405353
XR_003403560.2 lncRNA downstream 165178 13559889 ~ 13563949 (-) True LOC113535067
TU480772 lncRNA downstream 184722 13542003 ~ 13544405 (-) False rps27.1
TU480713 lncRNA downstream 274330 13452399 ~ 13454797 (-) True G405206
TU480934 lncRNA upstream 775 13735536 ~ 13735748 (-) True G405386
TU480985 lncRNA upstream 73722 13808483 ~ 13814892 (-) True G405419
TU480986 lncRNA upstream 81137 13815898 ~ 13872428 (-) False G405420
TU480987 lncRNA upstream 81137 13815898 ~ 13869755 (-) False G405420
TU480988 lncRNA upstream 81137 13815898 ~ 13839833 (-) True G405420
XM_034301653.1 mRNA downstream 2972 13689122 ~ 13726155 (-) True cgnb
XM_026928526.2 mRNA downstream 50836 13646267 ~ 13678291 (-) True tuft1b
XM_034301812.1 mRNA downstream 91150 13603327 ~ 13637977 (-) False ubap2l
XM_034301583.1 mRNA upstream 12117 13746878 ~ 13750446 (-) False s100s
XM_034301584.1 mRNA upstream 12117 13746878 ~ 13750443 (-) False s100s
XM_026928111.2 mRNA upstream 12118 13746879 ~ 13750465 (-) False s100s
XM_026928110.2 mRNA upstream 12119 13746880 ~ 13750502 (-) True s100s
XM_026928109.2 mRNA upstream 18052 13752813 ~ 13758428 (-) True s100u
TU480779 other downstream 170507 13556156 ~ 13558620 (-) False cks1b
TU480639 other downstream 336392 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 588012 13140694 ~ 13141115 (-) True G404999
trnav-cac_26 other downstream 1149476 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 1150326 12578729 ~ 12578801 (-) True trnav-aac_26
TU480964 other upstream 25000 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 25000 13759761 ~ 13761555 (-) True s100a11
XR_004577571.1 other upstream 346611 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 379858 14114619 ~ 14119658 (-) True G405588
trnat-ugu_14 other upstream 808456 14543217 ~ 14543289 (-) True trnat-ugu_14

Expression Profile