RNA id: XM_034301426.1


Basic Information

Item Value
RNA id XM_034301426.1
length 1470
RNA type mRNA
GC content 0.45
exon number 10
gene id tomm40l
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11832206 ~ 11842945 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGATCACGTGACTTGCTCACATGGGTAATGTGTTGGCTGCCAGTTCTCCCAGTCCACCTCCACCAGTGCAAGCTGGGCCGGGGTTGGTTTCTGTGCCTGCTGGCTTCACCATGCCGGCCATCTCCCCGGTCTCACCTGCTTCCTCTGGGCAACAGGAGAGCGAGCCTGCGCTACCCAACCCAGGTGCTTTTGAGGAGTTCCATCGAAAATGCAAAGAGGTGTTCCCCACGCAGATGGAAGGAGTTCGGCTAACAGTCAACAAGGGCCTCAGCAGCTTTTTCCAGGTCAATCACACTATCATGCTAAGCACCATGGGAGATTCCAGTTATAGATTTGGTGCTACATATGTGGGGACCAAGCAGACAGGACCTGCAGAGGCATTTCCAGTTATGGTGGGTGACATAGACAACACTGGCAGCCTCAATGCACAGATTATTCACCAAATAAGCAACAGAGTGCGCTCGAAACTAGCCTTCCAGACGCAGCAGCAAAAGTTTGTCAACTGGCAAGGAGATGCTGAGTTTAAAGGAGACGACTTCACAGCTACAGTAACTGTAGGAAACCCAGACATGGTGGTAGGATCAGGCATTGTTGTAGCTCACTATCTCCAGTCGATCACTCCGTCCTTGGCACTGGGAGGAGAGCTCGTATACCATCGCCGACCTGGTGAAGAGGGAACAGTAATGTCTTTGGCAGGAAGATATACAGGTTCTAATTTTATTGCCACACTGACCCTAGGAGGTGCTGGTGCACATGCATCATATTATCACAAAGCCAACGAGCAGCTGCAGATTGGTGTGGAGTTTGAAGCCAGCACTCGTATGCAGGAAACAAATGTATTGTTTGGTTACCAGCTGGACATCCCCAAGGCCAATCTGCTCTTTAAAGGTTCTATAGACAGTAACTGGGTAGTAGGAgcaacactggaaaaaaagcTGCTGCCTCTTCCCCTGTCTTTGGCACTTTGTTCTTTCCTAAACCATCGTAAAAACAAGTTCCAGTGTGGGTTTGGTGTGACCATTGGTTGAGCAACCTGTTCAGAGTTTAAGTGAACAGGGGCTGACATTCACACATTGATGTTTTAGGGATCAGCAACATGTGGACACTCACACAAAGTGCACCAtcaatttatcatttttttttttatatgaatgtgtCTCAGtcactgtttatatataaagaagTATCCAGAAAGTAACtgcagtatatattatatatagcaGATATTCAACCATATTCCCTCAATGTCCATTTCATAAAGCATCttgcaaaaaaaagtaaatcagcTGATTCCTGAATGAAGAAATGTTGAGTGAAAAGTCTGAAAGGACAAACAGCGaaataatactttattttaGGTATTTGAAGAGTGATTGTAatcttgtttgttgtttttgttaagtctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgcgtgtgtgtattgtgg

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479573 lncRNA downstream 10780 11821050 ~ 11821426 (-) True G404198
TU479539 lncRNA downstream 42041 11789319 ~ 11790165 (-) False si:ch73-347e22.4
TU479385 lncRNA downstream 66439 11763111 ~ 11765767 (-) True G404060
TU479297 lncRNA downstream 136015 11691704 ~ 11696191 (-) False G403981
TU479303 lncRNA downstream 151210 11679255 ~ 11680996 (-) True G403982
TU479616 lncRNA upstream 128133 11970742 ~ 11970964 (-) True G404235
TU479622 lncRNA upstream 154461 11997070 ~ 11997470 (-) True G404241
TU479624 lncRNA upstream 157657 12000266 ~ 12000510 (-) True G404243
TU479664 lncRNA upstream 282848 12125457 ~ 12125840 (-) True G404282
TU479760 lncRNA upstream 303474 12146083 ~ 12147663 (-) False grin2da
XM_034301427.1 mRNA downstream 22425 11799496 ~ 11809781 (-) False LOC113543858
XM_026942360.2 mRNA downstream 31468 11799496 ~ 11800738 (-) True LOC113543858
XM_026942361.2 mRNA downstream 31479 11799496 ~ 11800727 (-) False LOC113543858
XM_026942107.2 mRNA downstream 37789 11792220 ~ 11794417 (-) True apoea
XM_026942200.2 mRNA downstream 42027 11778027 ~ 11790179 (-) True si:ch73-347e22.4
XM_026928125.2 mRNA upstream 1944 11844553 ~ 11863767 (-) False LOC113535038
XM_026928124.2 mRNA upstream 1944 11844553 ~ 11863767 (-) False LOC113535038
XM_026928123.2 mRNA upstream 1944 11844553 ~ 11863767 (-) False LOC113535038
XM_026928122.2 mRNA upstream 1944 11844553 ~ 11863767 (-) True LOC113535038
XM_026928241.2 mRNA upstream 25023 11867632 ~ 11882509 (-) True lipea
trnay-gua_21 other downstream 8243 11823876 ~ 11823963 (-) True trnay-gua_21
trnay-gua_20 other downstream 9742 11822377 ~ 11822464 (-) True trnay-gua_20
trnay-gua_19 other downstream 11242 11820877 ~ 11820964 (-) True trnay-gua_19
trnay-gua_18 other downstream 12735 11819384 ~ 11819471 (-) True trnay-gua_18
trnay-gua_17 other downstream 14232 11817887 ~ 11817974 (-) True trnay-gua_17
TU480085 other upstream 588386 12430995 ~ 12483898 (-) True G404644
trnav-cac_22 other upstream 727855 12570464 ~ 12570536 (-) True trnav-cac_22
trnav-cac_23 other upstream 728984 12571593 ~ 12571666 (-) True trnav-cac_23
trnav-cac_24 other upstream 730990 12573599 ~ 12573671 (-) True trnav-cac_24
trnav-aac_24 other upstream 732131 12574740 ~ 12574815 (-) True trnav-aac_24

Expression Profile