RNA id: XM_026928300.2


Basic Information

Item Value
RNA id XM_026928300.2
length 2769
RNA type mRNA
GC content 0.45
exon number 5
gene id cacng8a
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12107898 ~ 12119870 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTAGAGACATAACTGATTCTCTTGTTTCTTTTAGCCTTCAAGATGTACaagctttattttgtttaaatttaggTGGATTCTAAAAGTGTATTGCATTGTTTGTCTTTGATTGTCTCAATTTAACGTTGATTGAATAATTTCAGGAAATATGTTAGAATTGTTTCCATGATATCCTTCAAAGaagacaaaagaaacaaaacatagAAAATTTACTCCCACCCACAGGCAAGAAAAcaggggagaaagaaagagagcaagagagggagggagaatgcgtgtgagagagagacaggaagagagacagagggtaAGAGAGGGAGAACAGTCGATGGATGCTGTTTGGACAGATTGGGCGGTATATTCTTCTGTGATAAGGACTAGAGTGCTGCAGGAATGGATGGCAAGGGAAAACACATTCCTCCAGCAATGGTATGGTGTGAGAGGGGCATACAGGTGCTTCTCACCACTGTGGGGGCCTTTGCTGCATTTGCCCTGATGACAGTGGCCATCGGCACAGACTATTGGCTGTACGCACGTGCCTTTATCTGCAACAGCACTGCCAACTCCACTCAGGATGACCCCCACAACAAGGACAAGAAAGACCCTGGAGCCCTCACCCACTCTGGCCTCTGGAGGATCTGCTGCCTTGAAGggtTAAAAAGAGGCGTGTGCTCCCAGATCAACCATTTCCCAGAGGATGCTGATTATGACCAGGATGCTGCAGAATACCTCTTACGTGTAGTCAGGGCCTCCAGTATATTCCCCATTCTCAGTGCTATACTGTTGCTGCTAGGTGGGGTATGTGTGGCATCCAGTCGGTTCTACAAGAGTAAGAGACACATTATCCTGGGAGCAGGCATTCTCTTTGTTGTAGCAGGCCTGAGTAACATCATTGGTGTGATCGTGTACATCTCAGCAGCACTGAGCGACATCTCACCAAAGAAGGATGAAGACAAGAAGTGGCACTACTCATATGGCTGGTCTTTTTACTTTGGTGGCCTGTCATTCATCCTAGCTGAGGTGGTGGGTGTGCTAGCCGTTAACATCTACATTGAGCGCAACAAGGAACTGCGTTGCCGCTCACGCGCTGACCTCTTCCACAGCACTACATCAGCTGTGCTGCGGCTACCCTCTTACCGCTTCCGCAGGGGCCGCCGTTCCTCACGCTCCAGTTCACGCTCTACAGCTGAGCCACCGCGTTCATGTGACCCCTCACCTCCTGGCCTAGGTGTCAAGAACTTCAGCCCACCTCTGGCCACTGGCCCACCACCATTCTCCGTGGCTACGTTgcccaacccacacacacacacgggaggAGGAGGGGTAGGGGACATCTCCATGTACACACTGGGCAGGGAAGGCAAGCCACCCATGTACGGAACAGTGGACCGTGCCTCTCTCTACCAGCTTCACAACTACTTCCCAACAAAGGAAGGAGGAGCAGGGACACTCATGACTGGGACATTGCCATCACTTTCCAAATCAAACCTGGCTTCATCAGCTAATGCCTCGTCTTCCTCCGGCCCTGGAGTGCAGCCATCCGCACTCACAGCTGGGAATACAGCGACTATGGAGAGGGATAGGGGGCTCGGCACGCTTGATCGGCTGGGGAAAGGTGATAGCAGCAACACCAATACTCTCAACAGGAGAACGACCCCTGTGTAATGCGGAACTCAGAAAAGGGGGGTAGGGGAAGGAGGtgggaaagaagagaaaatgaaagagagtgTGGTTGCTTGGTCAGCTGGCAAAAGGCAATAGCTCCAACATCAACATGAGGTGTGGTGATTTTTGGGCATGGGGGGTTGGGGAGGGGCTCAAGGAGAGAGGtatatagaaagagagaaagattggGAGAGATGGAAGAGGAAACATGATAATCTGAACTGAGACAAGGCAAGGAGGTTTAGGAAGAGGAAGCGTGGGAGgtagagagacaagagagagagagggctgaGAATCAGAGAAAAGGAGGATGACTCAGAGGACActgagaagagagagataagCCAATcatcctccttttctctctccataTCTGTTTTCAAACATGGTGACTTTAGTCATAAATAGAGTTACATTCGCACTTTTACTGATTCATGTCAAAATActtgatgtgtgtgatggtggtcTTACTTTGGTCTCTTTTGAGTCCAGTGCTTTATCATCAGGTTTATGCCTGTTACTTATTTAGCATTCCAATATAGTCACTCTTATTATTGTAGATGTTAATGTTTGGGTTACTGGAATTCCCTTTGTTatgaaattgtttatttaataatttatttattttgtttccattttagTATATGAActaaactgtgatttttttttttgcacatactgacacaatattttataatgtcaTTCAGTGTCAAGCAAGTGCATATTTGTGAGGTTTTGTGACATTATTGGCGtcatcatcaatcatcatcattttattattattattattattattattattattattattgtcacttTCACAAAGACAATACTTAGACTTGTGAAATTTCCTTTATTGTAATTGTAGGTGTATTAATAGTTAGATTCCATATgaatatgtttgtttaaattactAAAATTAGTCTCCTTAATATTTTTGCAGTGGGCTAAGAagtttgatgtactgtttaCCAGAAAACTGAGTTTTGGGAAAGGACAAAAGTAGAGTGTGAAATTAAAGACTTTTGCCAGAGGAGCAATACTTATACCTATAAAACCTCaccagaaaagacaaaaaactaTATGAATATGTGTGAGACTTT

Function

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04873 CACNG8; voltage-dependent calcium channel gamma-8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479624 lncRNA downstream 107388 12000266 ~ 12000510 (-) True G404243
TU479622 lncRNA downstream 110428 11997070 ~ 11997470 (-) True G404241
TU479616 lncRNA downstream 136934 11970742 ~ 11970964 (-) True G404235
TU479573 lncRNA downstream 286472 11821050 ~ 11821426 (-) True G404198
TU479539 lncRNA downstream 317733 11789319 ~ 11790165 (-) False si:ch73-347e22.4
TU479664 lncRNA upstream 5587 12125457 ~ 12125840 (-) True G404282
TU479760 lncRNA upstream 26213 12146083 ~ 12147663 (-) False grin2da
TU479803 lncRNA upstream 155398 12275268 ~ 12275502 (-) True G404421
TU480108 lncRNA upstream 394601 12514471 ~ 12515210 (-) True G404667
TU480079 lncRNA upstream 416477 12536347 ~ 12553725 (-) False fam131ba
XM_034301514.1 mRNA downstream 23735 12072924 ~ 12084163 (-) True si:dkey-14o18.2
XM_026928212.2 mRNA downstream 48503 12028221 ~ 12059395 (-) True slc2a3a
XM_026928346.2 mRNA downstream 103418 12001016 ~ 12004480 (-) True LOC113535156
XM_034301698.1 mRNA downstream 103454 12001016 ~ 12004444 (-) False LOC113535156
XM_034301735.1 mRNA downstream 111906 11983194 ~ 11995992 (-) True usf2
XM_034301703.1 mRNA upstream 25728 12145598 ~ 12256371 (-) False grin2da
XM_034301704.1 mRNA upstream 25728 12145598 ~ 12256371 (-) True grin2da
XM_034301705.1 mRNA upstream 28989 12148859 ~ 12256372 (-) False grin2da
XM_026928333.2 mRNA upstream 171872 12291742 ~ 12307057 (-) True dbpa
XM_034301544.1 mRNA upstream 188925 12308795 ~ 12317891 (-) True znf865
trnay-gua_21 other downstream 283935 11823876 ~ 11823963 (-) True trnay-gua_21
trnay-gua_20 other downstream 285434 11822377 ~ 11822464 (-) True trnay-gua_20
trnay-gua_19 other downstream 286934 11820877 ~ 11820964 (-) True trnay-gua_19
trnay-gua_18 other downstream 288427 11819384 ~ 11819471 (-) True trnay-gua_18
trnay-gua_17 other downstream 289924 11817887 ~ 11817974 (-) True trnay-gua_17
TU480085 other upstream 311125 12430995 ~ 12483898 (-) True G404644
trnav-cac_22 other upstream 450594 12570464 ~ 12570536 (-) True trnav-cac_22
trnav-cac_23 other upstream 451723 12571593 ~ 12571666 (-) True trnav-cac_23
trnav-cac_24 other upstream 453729 12573599 ~ 12573671 (-) True trnav-cac_24
trnav-aac_24 other upstream 454870 12574740 ~ 12574815 (-) True trnav-aac_24

Expression Profile