RNA id: XM_026928308.2


Basic Information

Item Value
RNA id XM_026928308.2
length 2079
RNA type mRNA
GC content 0.43
exon number 9
gene id gnb3b
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14860254 ~ 14867598 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaaaaagagtgtgtTTTTCACAGGCAAGTTGCCACCAGTCTCTTAGGGGAACGCATGAAAGGTAGAGTTTGAGAGAACTCAGAGGACAGTCCATTGGATTGAGGTGTGCTGAAAAGTGGGGCTTCAGTTAAGAAGAGAAACACTAATTCTTGGGGAATAACGGAGAACTGGCACTTTGTGTTGAAAAAAGGTCACCTTGTATCCATTCATTCCCATCAGTAATTACAGCCGTCAACTGCTGCCATGGGTGAAATGGAGAAGATGAAAAAGGAGGCTGAAACCCTGAAGACACAGATTGAGGCAGCACGCAAGGCAGCTCATGACACAGACTTATCTGCTGCTGCCTCTGGAGTGGCAGCTACGCCCACCATACAGCTGAAGACCAGGAAGACACTGAAAGGCCACCTGGCCAAAATCTATGCCCTGCACTGGGCCACAGATAGCAGGCTAATGGTCAGTGCATCACAGGATGGAAAACTCCTTATTTGGGATACCCACTCAGGAAACAAGATTAATGCGGTTCCTCTGAAGTCCTCATGGGTGATGACCTGCGGATATTCCCCCTCTGGAAACTTCGTGGCCAGTGGTGGTCTCGACAACATGTGCACCATATACAACTTGAAGACGCCTATCGTTAAGATTGTGAAAGAATTAGACGCACACACGGGTTACCTCTCCTGTGCTCGCTTTCTAAATGACAATGAAATCCTCACTTCCTCCGGTGACACCACCTGTGCACTGTGGGATATAGAGTCTGGCAAGCAGAAGACCATCTTTCTTAACCATGTGGGTGACTGTATGTGTCTGGCTCTATCCCCTGATATGAACATGTTCATTTCTGGAGCCTGTGACTCGTTGGCCAAACTGTGGGACATCAGGGACGGCAAATGCAAACAGACATTCCAGGGACACACCAGCGATGTCAATGCCATTGCATTCTTGAATAATGGAAACGCTTTTGTGACTGGCTCAGACGACTGTACCCTCAAGATGTTTGACATCCGCTCTGATCAGGAAGTGATGTGCTACGAGGATGGCCAAATGAACAGTGCTGTGACGTCACTGGCCCTGTCTATTTCAGGCCGCCTCATATTTGCTGGATATGACAACTTTAACTGCAACATCTGGGACTCGCTGAAGGGCGAGAAAGTTGGAGTGCTGTCTGGACATGACAACAGAGTGAGTTGCACCGGAGTACCATTGGATGGCATTTGTGTGTGCACTGGCTCATGGGACAGCTTTCTAAAAGTCTGGAACTGATCTGGTCGAACCACCCCAAAACggggaggaggaggggaagcaaatgaaagaaacagaaaggatAGAGTTGGAGGGGAGAAGTAGAGAGACTAAGAAAGAAGAAAGCCATGAAAAAGATCATGGCACCTGTCAGACATTAATGTCACAAAaccctttctctccctgtctctctttttctcctacATATGAATACTGGGAAATTAATGGAGTAATAGAAATGTCCTCTCAAACACCATAAGATGTAGCATATTAACACGAGAAGTGAAATGTATTATCACCTCATGACCAAGATCAAAAATAGCATAGGCTTAAGCTCATATgggaaaatgataaatgttaaatatattcattaatattttattgtacttGGTAAAACTGATAGGGTTTTGAAAACAAATCATGACTAGGGACAGGAACAGAATAATAGAGTAACTGTCAAATTACAGAAACTTATAGACTTTATTACAGACTTCGGTTAGATGGaagtatttatgtatataataaattacaAGAAAACTGCAGAGTTAATATACACTGACTTttatcacacacagacaatgtGCATGTCTGTCTAAAGCATGGATATGTCTACGATTTTGAAATGCAGCTTGTGTGGGCCTTTTGTCTTCACTCAGGTGAACCCAAGGTGTGACACCTAATAAAACATTACTCAGTCAATTACTTTCTTTCATGTACTTTAACCTCCAGATCATGTTTGTTTATGACTAAATGCTTCTGCTGCATAGTCACCTTCATCCAATTTCACACCTACATAGTTATGTATTTCTCTTACGTTGCCACAGAGTctcttaaaaaata

Function

GO: NA

KEGG:

id description
K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481572 lncRNA downstream 53395 14805181 ~ 14806859 (-) True G405924
TU481579 lncRNA downstream 106962 14749754 ~ 14753292 (-) True G405930
TU481577 lncRNA downstream 111807 14746848 ~ 14748447 (-) True G405929
TU481557 lncRNA downstream 139348 14688023 ~ 14720906 (-) True G405909
TU481565 lncRNA downstream 155942 14700268 ~ 14704312 (-) True G405917
TU481627 lncRNA upstream 151088 15018686 ~ 15019240 (-) True G405967
TU481636 lncRNA upstream 181123 15048721 ~ 15049178 (-) True G405976
TU481641 lncRNA upstream 184091 15051689 ~ 15051897 (-) True G405981
TU481642 lncRNA upstream 184357 15051955 ~ 15052188 (-) True G405982
TU481643 lncRNA upstream 184989 15052587 ~ 15052844 (-) True G405983
XM_026928369.2 mRNA downstream 190214 14652344 ~ 14670040 (-) True daxx
XM_034301734.1 mRNA downstream 222921 14622681 ~ 14637333 (-) True ctdp1
XM_026928370.2 mRNA downstream 245493 14598495 ~ 14614761 (-) True zbtb22b
XM_034301474.1 mRNA downstream 274012 14552044 ~ 14586242 (-) True epb41a
XM_026927893.2 mRNA downstream 368991 14481937 ~ 14491263 (-) True tmem222b
XM_026928434.2 mRNA upstream 30012 14897610 ~ 14917917 (-) True si:ch211-264f5.6
XM_026928222.2 mRNA upstream 63545 14931143 ~ 14964811 (-) False cica
XM_026928225.2 mRNA upstream 63545 14931143 ~ 14964811 (-) False cica
XM_026928228.2 mRNA upstream 63545 14931143 ~ 14964811 (-) False cica
XM_026928226.2 mRNA upstream 63545 14931143 ~ 14964811 (-) False cica
trnat-ugu_15 other downstream 314076 14546106 ~ 14546178 (-) True trnat-ugu_15
trnat-ugu_14 other downstream 316965 14543217 ~ 14543289 (-) True trnat-ugu_14
TU481171 other downstream 740596 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 776408 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 1098699 13759761 ~ 13761555 (-) True s100a11
TU481617 other upstream 99878 14967476 ~ 15013988 (-) True G405961

Expression Profile