RNA id: XR_004577571.1


Basic Information

Item Value
RNA id XR_004577571.1
length 893
RNA type misc_RNA
GC content 0.47
exon number 4
gene id npy
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14081372 ~ 14083846 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCGTACCGATGGAGCGCGTCCTCGTCCTTGCACGCGCCACTCTACTATATAAACCCAGCACAAACACCATCAGCCCCACGAGACACGACTCCCAGCATCACAGCCTCCCAGCATCACAGACTCCCAGCATCACAGACTCCCAGCCTCCCAGCATCACAGCGCTGAGCTCTACGGGAGAAGACAACAGAACATCAACTAACTATGCGTCCTCGTGCAAACGTGTGTGTCGGCTGGGCCGCGTGCATCCTGCTTGTTGTGTGTTTGAGCGCGATGGCGGAAGGATATCCAACAAAGCCGCAGAACCCAGGAGAGGACGCACCTGTGGAGGAACTAGCCAAGTATTACTCCGCGTTGAGACACTACATCAACCTCATCACAAGGCAGAGGTATGGGAAAAGGTCAAACTCTGACGCATTAACCCCAGACCTGCTGTTTGGAGAGGCAGAGATGCGACTGCAGTCCAGGTAAAATGTCGAAACCTACTCCTGACCTGGTGACATACTTCTTATGGATTTGcaaataatATATGGTGACCCTTTGATGTGGTGATGTCAGTGTAGACAAATATGTCAACATTTCCATGACTGTTAGCGGCAGTAACCTCTTACATCATTAAAAATGGCTACTTCCATGATTCCATCGCACTGAAATTTAGTGATATGTAGTCCATTTTTAGCAAGCATCAGGGTACACCAAACTTGTTAGTTTGGTCTGTTTAGGACATTGCTGTAATTGCATTGTTTCATTGTTTCTACATCTTGCTTATGAGATCATAAATCATCACTGATTTGCATGTAATCCCCAGCATCCCCTATGTGTATATAGATGTCCtgtatttatgtttgttatatGCACTGTAGCTGCaccaataaagaaaaaacattactgaCT

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0031843 type 2 neuropeptide Y receptor binding molecular_function
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481157 lncRNA downstream 4222 14076442 ~ 14077150 (-) True G405575
TU480986 lncRNA downstream 208944 13815898 ~ 13872428 (-) False G405420
TU480987 lncRNA downstream 211617 13815898 ~ 13869755 (-) False G405420
TU480988 lncRNA downstream 241539 13815898 ~ 13839833 (-) True G405420
TU480985 lncRNA downstream 266480 13808483 ~ 13814892 (-) True G405419
XR_004577551.1 lncRNA upstream 99640 14183486 ~ 14191755 (-) True LOC117596429
TU481288 lncRNA upstream 172678 14256524 ~ 14329200 (-) True G405681
TU481287 lncRNA upstream 221093 14304939 ~ 14329200 (-) False G405681
TU481309 lncRNA upstream 229893 14313739 ~ 14314834 (-) True G405701
TU481315 lncRNA upstream 295046 14378892 ~ 14385650 (-) True G405707
XM_026928422.2 mRNA downstream 7197 14067317 ~ 14074175 (-) False ccdc126
XM_034301712.1 mRNA downstream 7197 14067317 ~ 14074175 (-) False ccdc126
XM_034301713.1 mRNA downstream 7229 14067317 ~ 14074143 (-) True ccdc126
XM_034301598.1 mRNA downstream 35329 14016688 ~ 14046043 (-) False igf2bp3
XM_034301597.1 mRNA downstream 35329 14016688 ~ 14046043 (-) True igf2bp3
XM_034301504.1 mRNA upstream 56098 14139944 ~ 14168596 (-) False mpp6b
XM_034301505.1 mRNA upstream 56098 14139944 ~ 14168590 (-) True mpp6b
XM_026928099.2 mRNA upstream 88988 14172834 ~ 14195466 (-) True dazl
XM_026928095.2 mRNA upstream 112109 14195955 ~ 14218170 (-) False tbc1d5
XM_026928093.2 mRNA upstream 112109 14195955 ~ 14218170 (-) True tbc1d5
TU480965 other downstream 319817 13759761 ~ 13761555 (-) True s100a11
TU480964 other downstream 319856 13759761 ~ 13761516 (-) False s100a11
TU480779 other downstream 522752 13556156 ~ 13558620 (-) False cks1b
TU480639 other downstream 688637 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 940257 13140694 ~ 13141115 (-) True G404999
TU481171 other upstream 30773 14114619 ~ 14119658 (-) True G405588
trnat-ugu_14 other upstream 459371 14543217 ~ 14543289 (-) True trnat-ugu_14
trnat-ugu_15 other upstream 462260 14546106 ~ 14546178 (-) True trnat-ugu_15
TU481617 other upstream 883630 14967476 ~ 15013988 (-) True G405961

Expression Profile