RNA id: XM_026928333.2


Basic Information

Item Value
RNA id XM_026928333.2
length 5517
RNA type mRNA
GC content 0.41
exon number 4
gene id dbpa
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12291742 ~ 12307057 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGAGGTGACGTCACGAGAGCTCGCCCGTGTTCGTTCCAGCTGACCGTAGCCGCGATTCCGGGCGCtcgtctgtctcactgactcCGGAGCAGGCGATGGGTGACAACCCCGAGTAAATAACACCAGGGAAGAGAGCGCGAGCGTGACACAAggggggagaaaaagaaaaaaaaaagaaaagaaaagaaaaagcaaacgGTGCAGCAGATGATTCCTGGAGGCTACTGCGCCTCTTCCATGACAGCTGGAGTAGTGGAGCTCTGAGGACGGCGGCTTGGCGGCGGCTGCGCGTCTCAACAGCGTCGCACCGCTGGATCTAATGGACGCCTGTCGCTCGCAGCTCACTGGCTTTCTCGGGGAATATTTTCATCCGGGCCCGAAGCTCAAACTGGTGCCAAATGTCAGCAAATAAGCGGACTGAGCTCCTGCGAACACGTCAAGAGTGCCAGCTTCAATTCCCTGCCTGCAACTTTTGCTGAAAGCAGAGACAGAAGCGTCCTGGGCGCCAGGTTTAAACATTTCAACGCAGTGATAGTGAACAGGAAGATGGAGCACAGTGCTGCTGAGTAGAGATCCTATGCGtgtgcagatttattttaattattattattattttttagtttaaaaatggATTGAGTGGAAAGCACTTTGGGAAAGCCTTCTGGATGCTGGATGGTTTGAGGTTTGAGGTGTAAACCCTCTCCTATCCTCTTATCATCAATGGTCAGCTGAGGGCTTTATCCGGAAGCAGCTCCTATCTCTCACTCACtataggttttttttggtttttgtttcgAGTTGATTGTGATTTAAAAGTGGACCCTAAGCCAAGTATAGTCAGGCTATGTCCAGGCCTCTTTCTCAGCTTTTACCTCCTCCAGATCTTCCCTCTGGAGGTAGTGCACAGTTTGGCCCTACTGCTACTACAGCACCCAATGGCCACCTGGGCTCCGTGGCCAGCCTAAAATCTCTTCTTCAGCTTCCCATTAAAGGAGACAGCAGAGGGAAAGACTGCTGTGAGATGATcgATCAAGACAAACCGTTGGACTCTGATGAGGATTCACTTGGTGGAATTGGCACCGGGGCCAGTGGCTCTATGCGCACCTCTTCCCAGACGGCTTTCCTGGGGCCATTGCTGTGGGAACGCACGCTACCATGTGACGGCGGCTTATTCCAGCGGCAGTTCATGGACTTGGAGGAGTTCCTGACGGAGAACGGCATGGGGTGCATGCCACTGGGCAGTACCTCTGGTGCTCAGGCCCTCATTCCATCGCAGAGCATGCAGTCAGCCCTTCCAAGCCAGAGCTCCTCACCGTCTCCCGGCTCCTCCTCAGCCTCCTCCATCTCTTCCCTCTCATCTTCGTCATCCTCGTCCTCCCTTCTGGGACTAGACGTGCCACAGGTCCAAACCCAAGGAATGCTGGCAAGTCCTGAGTGTCTGCACGGTGGACAGGCCGTGCAGCAGGACCCGTCTCCCAGCTCCTCCTGCCCTCCTCCACCAGTGCCCAGCACTGGTGCCCCTGCGGCTGATGTCATGGTCAACTTTGACCCCGACCCTGCCGACCTGGCCTTGTCCAGCGTACCGGGCCAGGAAGCGTTCGATCCACGGCGACATTGCTTTTCTGAGGAGGATCTCAAGCCTCAGCCTATGATCAAGAAGGCTCGCAAAATGTTGGTGCCTGACGAGCAGAAGGATGAAAAGTACTGGAGCCGACGTGTAAAGAACAACGAGGCGGCGAAGCGCTCACGTGACGCACGACGCCTCAAGGAGAACCAGATATCCGTCCGTGCCGCTTTCCTCGAGCGAGAGAATGCTGCACTCCGACAGGAAGTGGCTGATATGCGCAAAGAGCTTGGCCGCTGTCgcaacatcatcaacaaatatGAGAATCGCCACGGAGACTTATGAAGAGGAGAATTTGAAAAAAGCAGTTTGGTCTCTTTGGAAAAGGCAGTTTAAGGGCAGGGCTGTCAAACCACACTCAGAAATTTCAGCAGACGGTTTTCTAAACAAGCACTACAACACTTGCGAATCATGTTTCTTTAAACGTGTGGCATTGTGCATGGCTGCAACAAATAGTTGCTTACAGATCAGTAATCCTAGTCAAAGGGAATGCTCACAAAGTCTATAAGAAACACTGTTCACTTTCATATTATTCTTTTTGGCTGTAATACTACGCTAAACCCTAACTTTTGCCATTTTAAGCTAGTGTAAATTTTTAGGGGAAGTTGTCGACTCGATATTCAGTGTTGCTCAGACTTTATGAACATTTCTTACTCTTGTTATTTTTCTTAGAAGATTATGCAGATGACACTGGTAATATTTTCTATGACAAAAAAAGACCTTGTATATTTTTGACATGGCTTTGGACAGTTACAATAACACAGAATAGAAGAAAACGGAGCGGAGGATAAGACAGCACAAAGATTTAGGCAGgaaaattgtatatttttatacctACAGGTGCAGACAGGCAAAGAGATTTTGGAActaattttttcctctatattttatacatatggGTGGGTAGGGGCACTTATGAAGAAAGAGGGCTATATGAAGATGTTTTTGAAATCAGGTTGCTTACTGTGGCTGATCGAGAAGGTCTGAAAGTGAAATTAAACTACCATGATGGACAGAACTATCAGAGCAATGATGGCCAGCTGTGCTACAATGAACAGCTGAAGTTGAAGTAAACAGCAAAATAAGTGTTTTGAAATTATGTTATGGATTTGTTACAGTACCTAATTTTATATGTTGGATTCCTTTTCTTcaatttctgtgtgttttgtcctGAGTTGAAAGCAAACAGATACAAGGAGAAAGCAGGAGGTCTGGACATTACACCCTGTCACTACATTAGAGGAATGGATGTACAAAAGATTTTCCATGTATATATTTGATTGTTGAAGCTTCtattccacataaacacacatacttaTACACAAACTGGACCTTGGATTGCATGTGCACAAACCAGATGTCTTTTAAGTCAACACACATAATCAGAGTTATTTCAGCACAGTTTTCCCTGCTCCTTcacactgtctctttctcacactccCTGAGTTTCtgatttttccaaaacattgattctggtttaaatttttgttgttgtttagttgCCAGTGAGTGGGTTGCATGGTagctcattttttttgtatattgtatGATCAGCACGGAAAAAAATACCCACATGTTGTCCTTTTGGTACAGATTCCTTGCACTAACTGTGTCTCTGTTTAAATTGTAAGAGCAATCTTAATCTATTAGAAGTGTTATGTAAATTCCCAAACTATATTCTAACAAAATGAATGCACCCTGATActactgtaaaaataatatccTATTATATAAAAGTTATAATGACCTATATGAGATTAAACTATTCTATCACTAGGTATGTCTGTAAATATCAgtatatgtgaatatgtgatTGTAgaggtaatttgcataaatgtaGTTATATACAGAAACCTATTGCTTCACAAAAAGTACCTACAGCCAGAAACCCAGAATCGAATCAATCAAACCAAAATGATGggataataataaaagaatatttttaaaaatacattattttaaagaagtgtttaaattttgtattttgtcctGGTGCaggtaaaataaattaataaaataataataaaatatacagaattcTATACAAGCCCAACTAATTTTGGGACAGTTGCTACAAAGCTACAGTACCCTCAAGAACTATTGGCATCCTTtaagaaaattagcaaaaaaaaaaaatcatatctaaAAAGTATAACATGCAATATGTGACATTTTGAGCTCACGTTGACATtgtaaagttgattttttttttaagacaaaacttttttttaagcagtgcatttttttttctacagaacaCTGATTTCAAAATGATCTGTACCCATACAATTGAAATTTTGTTAGGCCTGCCAGGACAATAACAGCACCGAGTCTCTTCCTGTAACATCTAATaaggttggagacacttgtagaggACTCTTTGTCCACatctccatgcagaacattttaagctcctttatGTTTGTAGGTTTGTACATATGGACTTCCCTCTTCAGTTTCAGTagggttcaaatccagagactgagatgATCGTGGCAAAACATTGCTTTAGTGTTTCTCTAACCATTTCTGTGTTAAAACCATTGCAAACTGTGAccttaaggctttttttttaaacgtctTTACCATCTTCCTCACTGTGTGGGGCAGACTGTGTGCTCAGTGGTTCAATTCCTGGCAAAATTTTCAACTTTTCGTGAAATATGTGAAACATTTTGTTATGGCACTAGCTgtgtttaatgatattttaattgttttgtgtAACAACCATCTGTCTCCTGTATTGAAaggtcttttttcccccatggtAATGGATGAAAaagggattttacatgtgtgcaacctcatatttatatccCAGGGAAACAGGCAGGTTTAAAACAGGTTCCAGGCAACAACAGAGTTCCTGtgcaaatgcaaaataatagaaGTTTTCAAGAATgtcaatttgtttgcatttatataaaatattcctCAATAATTTTGGCACATATATCTCtgagagaaaatactattatttaaaaataagtatgTCTAatgagaattatttttttcttagaacAAAGATAAATAGTTTCTCTGAGTCTGAGTGGaaaattattgtgtgtgatgtttattttatacaatcaattttgctaatttttatgaagggtgccaataattatggaggacactgtatatacagaagCTCTATGTTGATTTGCACATGacaatgtaaatgtgttttttttttttttttttaaaaattgttgttactcttattattattgctagTATTATCAATTTTGATAATATTCTCTATTCCTTTTCAGCATTTCTTGTGATGAGCTTTCTAACGAAACGCTCACCTTTGTAGTAATAACACCAATAACACCATCTTGGAAAACTCATATTGCCATTTGACTGTTCATAATTGGTGCCATCCACTAAGACTTGTCATTGTATGTGTGAGTTTATATAAgctgataaaaacaaacaagatttTTTCTCCTGGAAGAATTGAATCTGCTCCTTCTGCCAGCATTGACTTGGTGCTGCTTTTGCTCCCGCACATCAAAGGAGtatgatttttattacattgAAACTTTGTAGAAGCTTAAATTGAAACTTTTGGCAGTGCTATTTTTCTATATTACCCTGTACACATGTTAATGGAATTTCACAAGCACTGGTAGCTTATCCTCTTTTTCCAGTGACAAGTTTCTTACCAGTTGATATTGCGGGTATTGTATTCATCATATTTTGCCTCTTTCCATGTGGAATATTAACAGGTCCCTGGTTGTGACTGTTATTAACTACAAATACCAAGAGCATACCACTATCAAACCTAACAGAACCAATAATATCTACTGTTCTATGTGTGGAGATGCTGGGAAATGTGGTCTGGCTTTTTCCTGACACACCAATAAATGATTGCCATTATTCACCGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479803 lncRNA downstream 16240 12275268 ~ 12275502 (-) True G404421
TU479760 lncRNA downstream 144079 12146083 ~ 12147663 (-) False grin2da
TU479664 lncRNA downstream 165902 12125457 ~ 12125840 (-) True G404282
TU479624 lncRNA downstream 291232 12000266 ~ 12000510 (-) True G404243
TU479622 lncRNA downstream 294272 11997070 ~ 11997470 (-) True G404241
TU480108 lncRNA upstream 207414 12514471 ~ 12515210 (-) True G404667
TU480079 lncRNA upstream 229290 12536347 ~ 12553725 (-) False fam131ba
TU480124 lncRNA upstream 268023 12575080 ~ 12577284 (-) True G404681
TU480125 lncRNA upstream 269475 12576532 ~ 12578806 (-) True G404682
TU480131 lncRNA upstream 282215 12589272 ~ 12591533 (-) True G404687
XM_034301705.1 mRNA downstream 35370 12148859 ~ 12256372 (-) False grin2da
XM_034301703.1 mRNA downstream 35371 12145598 ~ 12256371 (-) False grin2da
XM_034301704.1 mRNA downstream 35371 12145598 ~ 12256371 (-) True grin2da
XM_026928300.2 mRNA downstream 171872 12107898 ~ 12119870 (-) True cacng8a
XM_034301514.1 mRNA downstream 207579 12072924 ~ 12084163 (-) True si:dkey-14o18.2
XM_034301544.1 mRNA upstream 1738 12308795 ~ 12317891 (-) True znf865
XM_034301807.1 mRNA upstream 22101 12329158 ~ 12348572 (-) False shisa7b
XM_026927829.2 mRNA upstream 22101 12329158 ~ 12348571 (-) True shisa7b
XM_026928119.2 mRNA upstream 48185 12355242 ~ 12391362 (-) True cnot3b
XM_026928121.2 mRNA upstream 49204 12356261 ~ 12391362 (-) False cnot3b
trnay-gua_21 other downstream 467779 11823876 ~ 11823963 (-) True trnay-gua_21
trnay-gua_20 other downstream 469278 11822377 ~ 11822464 (-) True trnay-gua_20
trnay-gua_19 other downstream 470778 11820877 ~ 11820964 (-) True trnay-gua_19
trnay-gua_18 other downstream 472271 11819384 ~ 11819471 (-) True trnay-gua_18
trnay-gua_17 other downstream 473768 11817887 ~ 11817974 (-) True trnay-gua_17
TU480085 other upstream 123938 12430995 ~ 12483898 (-) True G404644
trnav-cac_22 other upstream 263407 12570464 ~ 12570536 (-) True trnav-cac_22
trnav-cac_23 other upstream 264536 12571593 ~ 12571666 (-) True trnav-cac_23
trnav-cac_24 other upstream 266542 12573599 ~ 12573671 (-) True trnav-cac_24
trnav-aac_24 other upstream 267683 12574740 ~ 12574815 (-) True trnav-aac_24

Expression Profile