RNA id: XM_026928369.2


Basic Information

Item Value
RNA id XM_026928369.2
length 2844
RNA type mRNA
GC content 0.50
exon number 12
gene id daxx
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14652344 ~ 14670040 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATCGAATCAGAGAGCGCGTTGTTGCGGAGTCGGTTGTTGCCATGATCGGGATTTCCTGTGCGGATGTGTCGAGCTAGTCTCTGGATGATATTTTATTCGCCCCGCTGTGTTTTAAATGAtgtaactgtgaaaaaaaaagactttaggAGTTTGCAGTACAGGTTTATAGGCATTGTGTGTTCCTACAGTGCGATATTTGAAGCAGTGATTTTGTGAAACACGcgtggattttcacacaaagaCCTGGCAACCTGGAGTCGTTACCGCGAGCGTCTGTGTAGCGGCGAGGCGCGTGTATGAAACGTCGGGTGAAATAAAAACTGCACCTGCTCGGTCATCCTGATGTCGCATTAATTCCTGCAGCCTGCGCTGAATGCCTGAGTATCAACAGCTGCCTTCCTCAAGGACTTTCCTCAGCTCCTGTCACTGATGGCAGCTGTTACAAAGGTGATGGATAGCATTGTAATCctcgatgatgatgatgctgaagAGCCTTCGTCATCTTCATCGCATCCTCAGACATCCTGTGTGTCCAGTACGTCTAAAATCTTTCAGCTGCCAGCAACACACATCCCCGAGTCTCCATTCGCTTCTGCCAAAAAGGACAGCCATGTTCTCCAGCTGGAGAACGAGAAGCTCTTTGGCGagTTTGTGGATCACTGCGTAGAACACACCCGAGAGCACCCGGAGGTCGTGAGCTTCCTCCAGATGAAATACTCCAAGGCCTCACCTGACTTCCTGATGTCCGTGGAGTTCCGGAACGCTGTGGGTCGCTGCCTGACCCGAGCCCAGGCCCACACTACCAAAACGTTCGTTTACATAAACGAACTGTGCACCATGCTGAAACAGCACTCAACCAAAAGGAGGGCCGTCATCCAGCCTTCTAACGCCAAAAAGCAGGAGAAAACCGAGAGCAGAGACGAGGAAGAAAACGGGAAAACAGACGGAAAAGAGGAATCTGTCTTGGGGCAGCCAGACGTTGGGGAGGAGGAAAGGAAAACTAAACGAGCTTCCAGGAGACAGatagCATACCTGGAGAACTTGCTGAAGGTTTATAGTGATGAGATCAAACGGCTGCAGGAGAGAGAACTGGATTTGGAGGATATGGAGAAGGAGGACTCGTGCTACATCCAGGAGCATAGGCTCAAACGCAAAATGATGAAGATCTACGATAAACTGTGTGAGCTAAAGGACTGTAGCACACTCACTGGCAGAGTCATGGAGCAGAGGATTCGCTACAGCGGCACCCGTTACCCAGAGATCAACAAGAAGATCGAGCGATTTATAAACCAACCCGAGATCTCTCAGAACCCCCCGGATTACAGGGACATCCTGCAAGTGGTGAAGCGCGCCAACGAGCGCAACCAGCTCATGCTGAGCCGTAAGCAGGAGGCGCAGATTGCTCAGGAGGCGTTCCGCGAGACGGGCAACAGGCTGCAGGAGAGGCGCCACCTCGACATGGTCTACAACTTTGGCTCTCACCTCACAGACCTGTACAGACCAGCCACAGATCCTGCCCTTACTGACCCAATGCTAACCCAGAAGCTGCGCTCTAACAGAGAGCTGGCTCTCAGCTCCCTAGAGGAGGTCATCAACAAATACGCAGGCAAACAGGATGAcacggaggaggaggaaaggagaAAGCGTCTggggaaagagaaacagaaaaaagagAATAGCCAACAGGAGTCCATAAAAGCAGAGAACAATGACAAGAGTGGAGATGaaaatgaggaggaggaagaggcagaggaggagggagaggaagaggatgaggaggaggaggacgaggaggaagatgatgattCTTCAGATCCGGATATTGAGGAGGAGATCCAGGCCAGTGCAGCACAAGTCAGACCAGATGAAGAAGACAATGAGGAGGAACATCTGAGCGTCAGTGATGAGGTCGTACAGCCCAGCAGCGATGGCTCGTGTCCATCAGTTAAATCACCTGGCTGTGGAGATGCAGGTGAAAGTGGTGATGAAGTTCCTCAGTCTGACAGCAGGACATGTGGCAGCATTTCCACAGAGAAATCTCTCGATTCCACCGACAGTCCCTCCTCTTCAAACAGCCGCAGTCAGTCAGGTGTCCTGAACCCTCCGTCTGGGGAGGACACGTCGCTCATTTCTAACATCTGTCCCTCTGCTGACTCTAACAGCATCAGTGAAGCCACAGAGATTCCACCCACCCCTGAGAACTGTGTCTCCACCCCGCTGACGACATCCGCCAGCCATCCTGAGGTGATTAACGAGACGTGTAACAACAAGAAGAGGAAGCGGGAATCGAAGAAGAACCACATGATTGTCCAAAATGGCAACATCAGACGGAGCGATGTGAGCGACAGTGATGTCTCTCCGGATATAAAAGTGGCCTGTAGCCCTGTGCTAGTGGACTCCACCCGGGCGGACACACCCACTCAGGATATGGTCAGCAGCTCTCGTGCCACACCACCCCCTAAAAAGCAcaagGTGAACGTTGCAACCCAGTGTGACCCAGATGCGGTGATTGTTCTGTCTGATTCGGACTGAGCTGTGGAACTGGACAACGAGCCCTCTTTTCCTTAACCCCTGTTGCTCCGAATCTGCTGGTGCTTGTCCATGTAAAATCCCGAAAGTCAGTTGTCGTTTTAAGCGAGGAACAAAGCTGACTAGCGAAGCTCTTTTGCATTGAATTATCTTTACCACACTGTTATCTTTTTAAACTCTAACACAGCTAGCTGCACTGCCCATTTGGCTTAGCAGCACAATTTCAGGGTATGTTACTGGGTATGTTAGTTTTTTAGGGAAATATAAAACTTCATTGTAATGTTCTATTGTAtttgaaaattctttttttgaAA

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0016605 PML body cellular_component

KEGG:

id description
K02308 DAXX; death-associated protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481349 lncRNA downstream 173705 14475480 ~ 14478639 (-) False tpbga
TU481315 lncRNA downstream 266694 14378892 ~ 14385650 (-) True G405707
TU481288 lncRNA downstream 323144 14256524 ~ 14329200 (-) True G405681
TU481557 lncRNA upstream 17983 14688023 ~ 14720906 (-) True G405909
TU481565 lncRNA upstream 30228 14700268 ~ 14704312 (-) True G405917
TU481577 lncRNA upstream 76808 14746848 ~ 14748447 (-) True G405929
TU481579 lncRNA upstream 79714 14749754 ~ 14753292 (-) True G405930
TU481572 lncRNA upstream 135141 14805181 ~ 14806859 (-) True G405924
XM_034301734.1 mRNA downstream 15011 14622681 ~ 14637333 (-) True ctdp1
XM_026928370.2 mRNA downstream 37583 14598495 ~ 14614761 (-) True zbtb22b
XM_034301474.1 mRNA downstream 66102 14552044 ~ 14586242 (-) True epb41a
XM_026927893.2 mRNA downstream 161081 14481937 ~ 14491263 (-) True tmem222b
XM_026927974.2 mRNA downstream 173267 14475476 ~ 14479077 (-) True tpbga
XM_026928308.2 mRNA upstream 190214 14860254 ~ 14867598 (-) True gnb3b
XM_026928434.2 mRNA upstream 227570 14897610 ~ 14917917 (-) True si:ch211-264f5.6
XM_026928222.2 mRNA upstream 261103 14931143 ~ 14964811 (-) False cica
XM_026928225.2 mRNA upstream 261103 14931143 ~ 14964811 (-) False cica
XM_026928228.2 mRNA upstream 261103 14931143 ~ 14964811 (-) False cica
trnat-ugu_15 other downstream 106166 14546106 ~ 14546178 (-) True trnat-ugu_15
trnat-ugu_14 other downstream 109055 14543217 ~ 14543289 (-) True trnat-ugu_14
TU481171 other downstream 532686 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 568498 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 890789 13759761 ~ 13761555 (-) True s100a11
TU481617 other upstream 297436 14967476 ~ 15013988 (-) True G405961

Expression Profile