RNA id: XM_026928395.2


Basic Information

Item Value
RNA id XM_026928395.2
length 1691
RNA type mRNA
GC content 0.53
exon number 11
gene id ndufv1
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12761712 ~ 12770681 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGGCGGTATGCGCTCACTTGCTTTCCGCAGCAGCatcagaagaagcagaagaagaagaagtattTCCGGGTCCGCTCGCTAATGTTTTCCGCTCAACAGTTTCACTAAGCTGAGATCCGGGGAGCATACACGAAGGAAAGGATGCTGGCTTGTCTCGGCTGTCCTGGACTGAGTCGCACGCTCAGCTCAGGGGTGTTGCATCTGCCCAACACTTTTGCATCTCGCGCTCCCACGATCTCCACTTCAATCAGCAGAGGAAGCCACGTGGCATTAGTGCGCTACAACAGCACGGCCCAGCAGGAAAACGTCAAGAAAACAAAGTTTGGACCTTTGGCTGACCAGGACAGAATTTTCACCAACCTTTACGGGCGACATGACTGGAGGCTGAAAGGTGCATTAAGTCGTGGTGACTGGTACAAGACCAAAGAGATCTTGGAGAAGGGAGTGGACTGGATCCTCAACGAGATCAAAGTGTCGGGTCTGCGTGGGAGAGGAGGAGCTGGCTTCCCCACAGGGATGAAGTGGAGCTTCATGAACAAGCCCAGCGATGGCAGGCCTAAGTACCTGGTGGTGAATGCTGATGAGGGAGAACCCGGCACCTGCAAAGACCGAGAGATCATGCGCCATGACCCACACAAGCTGGTGGAGGGCTGCCTGGTTGCGGGTAGGGCCATGGGAGCGCGCGCTGCTTATATCTATATCCGTGGAGAGTTTTACAACGAGTCTTCCAATCTCCAGGTTGCCATTAACGAGGCGTATGGAGCAGGGCTGATTGGAAAGAACGCCTGCGGCTCTGGCTACGACTTTGACGTGTTTGTGATGCGCGGTGCTGGGGCTTACATCTGCGGAGAGGAAACAGCTCTGATCGAGTCCATTGAGGGTAAACAGGGGAAGCCCCGTCTGAAGCCGCCTTTTCCTGCTGACGTGGGAGTGTTTGGTTGCCCAACAACTGTTGCGAATGTAGAAACGGTGTCTGTAGCCCCAACTATCTGCCGTCGCGGTGGCTCATGGTTTGCCAGTTTCGGCAGAGAGAGGAACTCCGGCACAAAGCTCTTCAACATCTCCGGTCATGTGAATAACCCCTGCACCGTGGAGGAGGAGATGTCTGTTCCGATGAAAGAGCTGATTGAGAGGCATGCAGGTGGTGTCCGTGGAGGCTGGGATAACCTCTTGTGCGTGATTCCCGGTGGGTCGTCAACACCACTCATTCCTAAACATGTGTGTGAGGATGTTCCCATGGACTTTGACGGCCTCATACAGGCTCAAACCGGCCTGGGTACTGCAGCACTCATCGTCATGGACAAATCGACGGATGTAATCAGAGCTATTGCACGGCTGATCGAATTCTATAAGCATGAAAGCTGTGGCCAGTGCACCCCCTGCAGGGAAGgagtgGATTGGATGAATAAGATGATGTGGCGCTTCGTTAAGGGAGACGCACGGGCAGCAGAGATTGATATGATCTGGGAGCTCAGCAAACAGATTGAGGGTCACACCATTTGTGCTCTGGGTGATGGAGCTGCATGGCCTGTTCAGGGTTTGATCCGTCACTTCCGTCCCATCATGGAGAGCAGGATCTCAGAGTTCCAGCAGAAACAGCAAGCTCGGGCTTAGTTTCAGCATCTCCTCTTTCCCCTTTTATCctaatatacattattatttaagaataaaaGTGCTGTCTGACACTTA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0010181 FMN binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480163 lncRNA downstream 75323 12686190 ~ 12686468 (-) True G404719
XR_003403574.2 lncRNA downstream 84145 12663011 ~ 12677646 (-) True LOC113535190
TU480136 lncRNA downstream 126578 12601632 ~ 12635213 (-) True G404692
TU480131 lncRNA downstream 170258 12589272 ~ 12591533 (-) True G404687
TU480125 lncRNA downstream 182985 12576532 ~ 12578806 (-) True G404682
TU480264 lncRNA upstream 46903 12817584 ~ 12877390 (-) True G404799
TU480265 lncRNA upstream 104130 12874811 ~ 12942105 (-) False G404799
TU480293 lncRNA upstream 143260 12913941 ~ 12923945 (-) True G404818
TU480384 lncRNA upstream 213032 12983713 ~ 12984373 (-) True G404896
TU480388 lncRNA upstream 221520 12992201 ~ 12993258 (-) True G404900
XM_034301472.1 mRNA downstream 37276 12687762 ~ 12724515 (-) True kmt2ba
XM_026928404.2 mRNA downstream 112472 12636850 ~ 12649319 (-) True si:ch211-288g17.3
XM_026928399.2 mRNA downstream 208031 12515316 ~ 12553760 (-) False fam131ba
XM_026928544.2 mRNA upstream 1240 12771921 ~ 12783866 (-) True hcn3
XM_034301685.1 mRNA upstream 20115 12790796 ~ 12793315 (-) True si:ch211-81a5.8
XM_034301683.1 mRNA upstream 25050 12795731 ~ 12813429 (-) True clk2a
XM_026928254.2 mRNA upstream 25050 12795731 ~ 12807646 (-) False clk2a
XM_026928253.2 mRNA upstream 26164 12796845 ~ 12813429 (-) False clk2a
trnav-cac_26 other downstream 182140 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 182990 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 184131 12577588 ~ 12577660 (-) True trnav-cac_25
trnav-aac_25 other downstream 184987 12576732 ~ 12576804 (-) True trnav-aac_25
trnav-aac_24 other downstream 186976 12574740 ~ 12574815 (-) True trnav-aac_24
TU480489 other upstream 370013 13140694 ~ 13141115 (-) True G404999
TU480639 other upstream 619283 13389964 ~ 13392735 (-) False dpm3
TU480779 other upstream 785475 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 989080 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 989080 13759761 ~ 13761555 (-) True s100a11

Expression Profile