RNA id: XM_026928404.2


Basic Information

Item Value
RNA id XM_026928404.2
length 4447
RNA type mRNA
GC content 0.38
exon number 2
gene id si:ch211-288g17.3
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12636850 ~ 12649319 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAAAAGGACACGGAAAGACGTTAGATTTCAAATAATCGCATCCGCCAGCCTTCTTGTGTCTGGTGCTGTTTGCATCGAAATTATTGTTGAGTGCATGCGAGAGAACTCTTCTGCCCTGACTTAAAGGGTGAATAAAATTTAGCAGTCGGAGAAGACAAGCCTGGGTGAAGGTCCCAGACCCTCAGTAAGGCTTAAATAACATTGTGATGGAGGTTGAACAGAAGGATGACTCTAGCAACACTCTGGCCAATGGAAGTGCCAATTCAGGCAAACGTGGCAGGGGCAGACCACGAGGCtcagttaagaaaaaaaattatctctGTGAAAGAGGTATCTCACAATGCTAGGGCATCCAAAAGAGTGGATTTCTTTTCACCTGAGACGGTGATAAGGCCAAAAGTCAAGAAGCGTGGTCGTCCGAAAAAGATAAAAATTCCAGGAAGACCGAGAAAGATTCCCCTTACACCAGAGGAAGAAGCAGAGAGAATTTTAAGATTGAGCAAGAAACGGAAACTTTCAAAGCCTCTTGGGAGACCCCGCATTCATCCCCTTGTAGACATGCCAAAGGAGAAAAGGGGAAGAGGTAGACCACGCAAATATGAATCCATGGCTTCACAAAATGGCAGAATTGACGGGAACCTGAAAAGTGTAAAGATCACTGAAGTTGGTGGAGACACTCCTCGAAGGAGGGGAAGGCCAAGAGGCTCGTTTAAGAAGAAACGGGGACGGCCAGCAGGTCCATCTCCAGCGAAAAGGCCAATAGAAGGGACTCCAGGAAAAAGGGGGCGACCTCCAGGCTCTGGAACCAAGCTACAGGTCAAGCAGGATGCGAATGGAACTCCTCGAAAGAGGGGCAGACCCCCAGGCTCTGGACGAAAGCTAAAGGTTATTTCAGGTGAAACAAATGGAACTCCTAAAAAGAGAGGGCGGCCTCCAGGATCTGGGACGAAGGTAAAGGTTGCAAAGCAGCTGACGGATGGAATTCCCAGAAAGAGGGGACGTCCTCCAGGTTCTGGGACCAAGGTCAAAGGTCTACTCCAGGAGACGAATGGAAGCCCTCGGAAGAGAGGACGACCACCAGGATCAGGAAAAGTCAAGACAATTACAGAGGAGGCTGAACATGTTCTCACTAACAGTACCTTCTCTGTTGATGCCCAGCCTCGTAAGAGGGGCCGTCCTAAAAAGGCTGAAGCCTTTCCAGCCGTTCAAGCTGAAGAAGGAAAGAGCAAGGAGAATGATGAACCCTCGCCCAAGCGACCCCGTAACTCATTTGCCTCTACCAAGAATTCAAGTAAGCCAGACGCTGAAGACCAAAAGGCCAGTGAGAATGATGGTTGCCACGTGGCTACAACAGTAGAAAATCCTGTTCTGTCTGCTGGAGGTGCTGCAAAACCAGACAATATAGAACAGGTTGGTGAGGATGAGCTAAATGATGCCTCGGTAGAGGAGGTTCATGAGAGTAACAGCAGAAAGATTTCATCCTCAAGGGTAGCAGGTAAATCccaaaaaaagaagtaaatcaTTGGGTAGTATAGAgcacaaatatttttgaatgggTTTTTACCAGATTTCATACAAATTGTTTGACTTGTCCCGAAGGTTAGTAATgcagatatctttttttttttttttttttttttttttcctgttgctCAGCTCTTGTGCTTTTGCATgtcttttaaagaaatgtttattttgataCTCTATGGTACACCACCTTCATATAAATCCCCATTGAAACAGACATTTACAAATGCAGATTTTGAATTGCATTCAGAGACGAAATGGAATTCAAATTTTTAGGCAAGTAATCATCTGCCTACAGTCTGTCTGCATGACTAGCTGTCTAAGCAAGTCTTAGTACACtgagcatttttattatttatacaaatttatTAGGTGCGGAAATAAGCTATTTCAGGACTATTCGGCAATTCtgctaaaaaaatttttatatcaACGGCAAGATCAAATGGAACATGAACTACATTTTATGCTAGTCTGTATTGGTGTGTCTTGAAATTACACCTGTGTTTGGAAGAAGCCTGAAATTTCCTCTAGGCTTGATGCTGGATGTTGAAGAATGCTTGTTAGAGAAGTATTGGTGCAGGATCTATggtgggtttttgtttgtttgtgttttttttttttaatctgaattttaaTAGAAGCATTTGTCAAGAAAAAATGGCATGCAGTTTAATGGTCCCATCACTGGACGGCAAAACATCAGACTATTCTAGCTAGACATCACTGCATCCTGAGCCTGTGCTGCCATCCGTGCAATCCACTCAACAGGTCTTAAAAGTGTCATGTGTACCCATGGGTGCTTGaatttatatagatatattaaaaaaacaggaattaaAAATGTTCAACTGAAATTTGTTGAAAGATGAAAGTTGTTTGATATGCATGAAACACGTcgtgaaatgcataaaatctctttgtatttgttaaaaaaaaaaaagtgattggCAGTATACCGGTTTATAAAACAGACCCCGGAGTTTGTAGCTCTAACTCGAGAGCCATTTTAGACACAGTTTGTGTCTTCACCAGCTGTtgactgaagaacactgaagcGGGTGGCTGATTTTATCCTTTCGGGGGTTGTGTGTTCCCTGTGACCAGTAAGcagttttaaaattttcagGTGCATGATGTGGTGACTGAGGAATTACTGAATTTTAGAtcttttaataatgtattaggaACATCGGCTATGTAGCACAGCTCCAGCGtcactatatatttttttttaatcaagagtCTTGACATTGTTTCCATAAAATGTGGAATATGTATCATAGCATACACATTTCCATAAAAATGTGTATGCTGTTGTATGTACTATTACTGTCCAAGATTGGCAAAGCATAGTTATGCTttgttttaagattattaccTACTGCTATAAAAAATCGGCCTGACAATATTAAAAAGCAGTTTTGCTCAATTAAGTGTCTAATAATGTTTTCCCATACTCCCCTTATCATGTGACATGTACAGTTGCATTCAAAGTTGGTGTTATGACAGcttacttttattcatttgtgtgtgtaaaacgtattatttttttttttaaatgaatttccaTTCGTTTAGAAAGTAACATTGTAATTATACCTGTTATAAAGCAGGAGTTGAATGTCCATGTGATGTTTTCTTTCATGATTGTGAAgacgtttttttaaaaaaaaatttctgcttAATTATTTTTCAGGGCATAAACTAAAAGGACATTTACACAACAGAAGCTATAGTTATTAGAACCTCttagaatttaattttatgGCAGTTTGAAACATGAGACcacagtgaagttttttttttttgttttgtttttgttaaattactAACCATGtgaacagaaatatttatatgtaaatctAGTTGTTTATGTTGCTAATGTTCTGGTTCTGTTTGTCAGATTGTATTTGTTGACATTTCTGTCCAAAATGTTCACAACTAATTGGCAGCCATGAAAATAATTGTTTCAATTAGCTATGGTTATGTGATTATGTACTGCATTACAAGtttgtataattaaaaaagttCCATACTTGCTACAtcagttttctaaaaaaaatcagtttccaTGACTTTTTATTGCAATTTCTCTTGATTGATGTATAAACGTTGAAGTTCAGAAAAAGATCTTCCTGTGATTATATTTGTGGCACTTCTGTTCCTGTTCTGAAATGTGTTCAGACTTTGTCTAAAAACTCTGGATGGAAACTTAAAAATGGTTCccccctccctttttttttttttaccatcacTGTTCAGAAAGCACTGATTGTGGTTTTGAATTTACTAAAGCAACAATGTCATTACATTCTCATTGCTGAAGCAGAGTCCTTCTTTCTCCCTTTAGTGGTTCAAATGCTTAATAACATCCGAAAAGGAGAGTGAAGCCCTTTAGCCCTTTCAAGAAATGTGATACCTTTCTATGATTTAGGAGAGGTCTAAAACATTCAAAAGTTGGTACCCTAGgctagaataaaataaaaaccacctGTCAGAGGGCAACATTTGAGCTGAAATCTAAGTGTTATACATAAACTTCATTGAACTGCAAGTGTGGGATAGACTACATGTGGTGTTTTCCAGTCTGCAGCTTGCGCTTGTGgaatttgctgttgtttaaTTTAGTTTCAGTAGATGGGTATAATGCCTTGATATTTGACAGTAGATGTGTACATCCCTGGTAGAAAGTGTATATAAAgcaacttttttcccccctaaaatGACTGATCCTAACCATTTTGCTTAGAATAGATGTATTAGCTTCCAGCAAGTGCATAGGCTTGTTTTCTACTATAGTAACTTCTTTGATGTTTGATTTATACATTAATCTGTACTCTTAACAATTAGAAGCTGTTTAATGTGAGCActtgtatttgatattttttctttaataaaatgctttctTCAACCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480136 lncRNA downstream 1637 12601632 ~ 12635213 (-) True G404692
TU480131 lncRNA downstream 45317 12589272 ~ 12591533 (-) True G404687
TU480125 lncRNA downstream 58044 12576532 ~ 12578806 (-) True G404682
TU480124 lncRNA downstream 59566 12575080 ~ 12577284 (-) True G404681
TU480079 lncRNA downstream 83125 12536347 ~ 12553725 (-) False fam131ba
XR_003403574.2 lncRNA upstream 13692 12663011 ~ 12677646 (-) True LOC113535190
TU480163 lncRNA upstream 36871 12686190 ~ 12686468 (-) True G404719
TU480264 lncRNA upstream 168265 12817584 ~ 12877390 (-) True G404799
TU480265 lncRNA upstream 225492 12874811 ~ 12942105 (-) False G404799
TU480293 lncRNA upstream 264622 12913941 ~ 12923945 (-) True G404818
XM_026928401.2 mRNA downstream 83090 12515316 ~ 12553760 (-) False fam131ba
XM_026928400.2 mRNA downstream 83090 12515316 ~ 12553760 (-) False fam131ba
XM_026928399.2 mRNA downstream 83090 12515316 ~ 12553760 (-) False fam131ba
XM_026928398.2 mRNA downstream 83090 12515316 ~ 12553760 (-) False fam131ba
XM_026928397.2 mRNA downstream 83090 12515316 ~ 12553760 (-) True fam131ba
XM_034301472.1 mRNA upstream 38443 12687762 ~ 12724515 (-) True kmt2ba
XM_026928396.2 mRNA upstream 112393 12761712 ~ 12770589 (-) True ndufv1
XM_026928395.2 mRNA upstream 112472 12761791 ~ 12770681 (-) False ndufv1
XM_026928544.2 mRNA upstream 122602 12771921 ~ 12783866 (-) True hcn3
XM_034301685.1 mRNA upstream 141477 12790796 ~ 12793315 (-) True si:ch211-81a5.8
trnav-cac_26 other downstream 57199 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 58049 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 59190 12577588 ~ 12577660 (-) True trnav-cac_25
trnav-aac_25 other downstream 60046 12576732 ~ 12576804 (-) True trnav-aac_25
trnav-aac_24 other downstream 62035 12574740 ~ 12574815 (-) True trnav-aac_24
TU480489 other upstream 491375 13140694 ~ 13141115 (-) True G404999
TU480639 other upstream 740645 13389964 ~ 13392735 (-) False dpm3
TU480779 other upstream 906837 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 1110442 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 1110442 13759761 ~ 13761555 (-) True s100a11

Expression Profile