RNA id: XM_034301713.1


Basic Information

Item Value
RNA id XM_034301713.1
length 2777
RNA type mRNA
GC content 0.42
exon number 5
gene id ccdc126
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14067317 ~ 14074175 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACCTCTGTTCCTGTGTGGCTTCCCAGCGAGCATAAAGTCCTGGAGACAGCGCTGCTGCTCCTGTGCGCTGAGCTGGGCGGCTGGATCACGaggtggaaatcacaacccagcAATACCAGTAATCATGAGTACACTCATGCCATATTAATTAggaactatactatactaatactgggtagggccccCTTAGCTCTCAGAACAGCAacaattcttcgtggcatggattctacaaggtgcagTATTGGATATGGTGACTGTGGaggccactgaagtacactgaactcaccACTGTGTTCATGGAACCAGATTGAGACGACTTGCGCTTTGTAACgtggggcattatcatgctggaagtagccattataatgtggtaaattgtggccatgaagagaTGTActtggtcagcaacaataccgATTGGATAATTGTGTGAatgaacaggtgttcctaataaagtgtctgGCAATTTGTCAAATGGATCAGGCTGAGTATGAGATCCCAGGGCTGATCGACATACCGGAGGTTGGGAGTGGTTCAAACTCTTCCAGCTGCCATTCAGTCTAGTCCCCATCCAGATGCCCTGATATTTCCCTGCTGGATTCAGCAGTGGTCACATTTAGATCTATTTTGGATATCTTTATTACCATCTGTAGTCATGCCCTGATCTACAGCCATTTCCCTCATCTTTATGTCCTgcttttctgattctgatttttgcCGATCATCCCACTAATCCTGAACTCCAACTTGGAGCTCCAGTCCAGACAACACATTTACAGGCTTATCTTTAATTCTGTCATCTCAGTCCATTCCACTGGCCTTGGTGGTGGTAGCCAACGTAGCTGCTGGGCTACAGCAATGCTCGGCTGTCTGCTGCGAGGTAGGAGCATGTCTCAGAGGCTCAGCGTTTTGCTCCTGCTCTTTGGCCTGGCCTGGTGCCTGCTGCTGTTGCATTACACCTTTACACAGCCACGGCACCAAAGCAGCACCGAACTCCGCCAACAGATCCTGGAGCTGAGCCAGCGCTATGTCAAAGCTCTCAGCGCAGAGAACCATGAACTTGCAAGGCCATACAACCCCTCAATGGCTGGATATGCTGATCTGAAAAGGACCATTGCCGTGCTATTGGATGACATCTTGGACCGTTTGGTGAAGCTGGAGAATAGGCTGGATGCTACAGTGAACACATCAGTTCACAGCCCTTCTCACATGACAGGGACTGTCATGCACAGATCCACTAAACAGAACGAATCAGGCACAAACGCTCACAGCAATCAGCTGCCGCCCCAACCACTGACGTAATCTGGGAGCTAGTGGCTGATGGGTGGCACCATTGACACTGTGGTTGCACCATGACTCCAAGACtgatatattttgtgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtatatacatataaatatttctattagggatgtaaccaagtATCAATACTTTATTCGGATTGAACTGAAAATGTGTCCTAAATGAAATACAGATCCAAATAGTAGGcagagtattttttttgtttgtttgtttgtttttgttttgtttttaagaaagctGGCCAAATTGCTTTAGACTAGGTGTATGCATTTGGACGGTGACTGGCCCAGAATGTTCAGGCATCGGAAAAGTTAGacacttttcatttctttttctcagtcttttcacAGGAAGCAAGTTAACAGTGCATTTCTGATTTGAAATACACAGCCATTATACAAGGGACCTGACAACCCTAGAACCCTAGAAATGACCTAGAAGTTCATTTACGTGACACTGAATAGTGGAGCTTCTATTATATTTTACCCAACTCCAAACTGGAAAtaaatttgataaaatattattagatggctattattgttaaatgtaaataacagtttcaTGATTTGGGAAAGAGGTCACTGCTTTGAAACAGCTTGCTTACTCAGCCACATTAGATAAAAGATAGAAACTCATTAGAAAGCTTCTACAGGGTGCGTAATgcaggagttgaataaagttatgttctgcaaattgctatttgttagaatttgtgaatgaaaaatgaattctttttccagcagccctgtattttcagtgtttccagggCTTTGTGATAGggttaacataaaaaaaaccttttattttaatgctctTATGCATTGCAATGCTGACGCATGATTGGTTTATTGGATAATTGCACGAATGAGTAGGGGCACAgttattcctattaaagtggtcggtgagtgtgtatatgatgtTGGAATAAGCAAATGTTGTTGCATAGAAGAGGAAAAATCTTTCCAGGATAGTCCAGATCAGTCAATCAGCAGAACTGTGTAAAAGGATTGCTTTACAATAGCTGCATCATtgcatgttattgttaataGAATTTGTGCacttatattcttatattcacTTATATTCAGCAAGAAAAGCACATGCGCAAATCAAGCAAATTTTATATGTTGGATTAATGAAGTCCTGATGCACATGTGAGACAACAGTGTTCACTGGGAACTAGTTcacttttataatataaaactgaGTCCATTTTGGCAGAAAAATATGTAGCAGGGTATAGACATAGTTTGTGGTTAGACTTACTAAATCTTTAATTAATCCTATTCATGAATTGCCAAAACTAGGCCACAAATGCCTCCCCTCTGTAATTGTGGGACCAAATATTGACAGGTCCTGCTTGGAGCTTTAGGGTTTCTCAGTGCTGAAGCACTCCTCATGCCATGTTGGCTGTCGGTGTAATAAAACAAGTGCCAATATCAGTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480986 lncRNA downstream 194889 13815898 ~ 13872428 (-) False G405420
TU480987 lncRNA downstream 197562 13815898 ~ 13869755 (-) False G405420
TU480988 lncRNA downstream 227484 13815898 ~ 13839833 (-) True G405420
TU480985 lncRNA downstream 252425 13808483 ~ 13814892 (-) True G405419
TU480934 lncRNA downstream 331569 13735536 ~ 13735748 (-) True G405386
TU481157 lncRNA upstream 2299 14076442 ~ 14077150 (-) True G405575
XR_004577551.1 lncRNA upstream 109343 14183486 ~ 14191755 (-) True LOC117596429
TU481288 lncRNA upstream 182381 14256524 ~ 14329200 (-) True G405681
TU481287 lncRNA upstream 230796 14304939 ~ 14329200 (-) False G405681
TU481309 lncRNA upstream 239596 14313739 ~ 14314834 (-) True G405701
XM_034301598.1 mRNA downstream 21274 14016688 ~ 14046043 (-) False igf2bp3
XM_034301597.1 mRNA downstream 21274 14016688 ~ 14046043 (-) True igf2bp3
XM_034301599.1 mRNA downstream 21275 14016688 ~ 14046042 (-) False igf2bp3
XM_034301600.1 mRNA downstream 21276 14016688 ~ 14046041 (-) False igf2bp3
XM_034301601.1 mRNA downstream 22300 14016688 ~ 14045017 (-) False igf2bp3
XM_026928309.2 mRNA upstream 7229 14081372 ~ 14083846 (-) False npy
XM_034301504.1 mRNA upstream 65801 14139944 ~ 14168596 (-) False mpp6b
XM_034301505.1 mRNA upstream 65801 14139944 ~ 14168590 (-) True mpp6b
XM_026928099.2 mRNA upstream 98691 14172834 ~ 14195466 (-) True dazl
XM_026928095.2 mRNA upstream 121812 14195955 ~ 14218170 (-) False tbc1d5
TU480965 other downstream 305762 13759761 ~ 13761555 (-) True s100a11
TU480964 other downstream 305801 13759761 ~ 13761516 (-) False s100a11
TU480779 other downstream 508697 13556156 ~ 13558620 (-) False cks1b
TU480639 other downstream 674582 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 926202 13140694 ~ 13141115 (-) True G404999
XR_004577571.1 other upstream 7229 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 40476 14114619 ~ 14119658 (-) True G405588
trnat-ugu_14 other upstream 469074 14543217 ~ 14543289 (-) True trnat-ugu_14
trnat-ugu_15 other upstream 471963 14546106 ~ 14546178 (-) True trnat-ugu_15
TU481617 other upstream 893333 14967476 ~ 15013988 (-) True G405961

Expression Profile