RNA id: XM_034301515.1


Basic Information

Item Value
RNA id XM_034301515.1
length 2553
RNA type mRNA
GC content 0.42
exon number 14
gene id lrrc71
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12838204 ~ 12855492 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTATGGAAGTGTAGtctattaataaacaaaacgGGGTGTATAAGTACTTTTATACACATCAATAACAAGAATAAGATGAATAAGAGTTTTCCTGCATCATTATAGTACGTTCAACGTTGTTAAATAGGCTtgtgtatgaaataaataattattaaaaaataaaaaaagcaatgaaaaaaagGATGGAAAAAGTCAGCAAGGAGAAAGGGACTTCTGGAGTTCTGGAGGAAGAGCCTTCACACACTGCAGGACTGAATATACAAGACAAACGCCCAGTCCAGAGCGTAGATGACTACGAGTGCTCAGGCAATCTGGAAGTGGATTTCCCAGAGCTGTGTGCTGTAGTCGGCTTGAGGGAAATCCCTGACGTGAGACCACTAACAGCAGCATCACCTTCCACAGAAAGAACAACGGAGAGTAGCCAAGAAGAGATTTTCTCTGAAAGCTGTATGGCAACCTGGTCTCCTAAACCCTGCCTTCACATAGAACTGGAGAGCGAGGACTCACGGAGCGTAAAAAGAGTTCGAATATCTGGATGGAGGGTGGACGAGGCGATGGCTCGAGTGCTGAGTAAGACGTTACCATCCCTCAGCAATCTGCAGAGCCTAGAGACAGTTATTTTGGAGGGAACCCCTATTCCAGAAAACAGTTACCATATTCTCATGGGAGAGGACAGTATGATAACACACCTATCACTGCGAAACAATCGCATAGGAGAAGAGGGAGCACGTCTGATTGGTTTAGCGCTGTCCAAGAATCTCCTGTCACTCAACATGGCCTTCAACGCTGTTGGTGATGCGGGTGCTATTTATCTCGCCCAGGGGTTGCGTCTCAATCGCACTTTGTTGTATCTCTCCCTGGCCAGCAATCACATAGGCGATGTAGGAGCAGCTCATCTGGCTCAGGTGCTTGGCAGATTTGCTCTGACACATGAAGAAATAGTCGAGAGGAGGAGGCTGTTGAAAAGGAAGGACCAACTGGATGCCACCAGAAAGGATGAGAAGCCTCCAACCAATCAGACATTGACAACaacaggaaagaaagaggaCCCCAAAGTGGAAAAGAAGAGAACCTCAGATACTAAGATGCCACAAGGCAAAGGTGGAAAATCAGATGGAAAAGACAAGCATCTTTCAGTGAAGGAACAAGAGaCAGAAGAAGTGGTTGAGACACAAAGCCCTTTGCTGAATCCTGCCATACAGAACATTGGAGGGAAAGTGATTTATCCAGGCAACACAACACTTCTGTCTCTAAACTTGTCAGGCAATAAACTGACACAGCAGTCACTTCAGATGTTCCTGTCATCTGTGGTGTGTCAAGGGAAAAGAGGTCTCCAGCATATTTCCCTTAATaggaaCAGCTTTCCTCCAGACTGTGAGGTCTTCCTGAAACTACAGGAAATGATGTCACTTAAGGATCCTCTAAACCGAGCCACCTCAGCTCAGGTGGACGCTGAGCAGGGACAGGCAGCATAGTTACCTTTTACGCCTCAGAATTTTACTTTACAATTATCTTTTTTATGCTCTAACATCATGTGTTTTTGTAGTTGCCtcctaagtaaggaataaatcacagtGGGGCGtgctgtgatagaaaaataatcaacgacgtggtggtgtgatggtgtgaagCAAAGGGGAGGGTCATTACcagcccaaagttgattattttctaataaaagcacatcccaacatgttttattcctcttacaccaccatattttgttaataattttgtgTTGAGTCGTATCACGTCACACACATATGAGTAGAGAGAGGAAGTTCACTTGGATTACCACAAGAGTGTAAAGCCAGACTGAGTTGGGCTTCACTGATCGCtactgttcccaacgaccaatcactgatcactactgtccCCCATGACCAATCACGGCTCGCTActtttcccaacaaccaatcactcatcacaaTTGTTCCCAGAAGTAAAAACTTAGCCTGTCTATGCTATATGTGTTCTTCCGAGAAATGTAACACtgaaattgtaaaaatatttgcaatttatttattattgcaaaTAATCACAGATCACCATTGCTCACATCAACCGATTACTGATTACTGCTGTTCCGAACAATCGATCACGGATCGCtgttgttcccaacaaccagtcACTGCTCACtactgttcccaacgaccaatcagtTATCAACCGATCAAAATACTTTTGATAGACAGTATAGTATTTCTAAAATGTGGAAAGAGTTAGTTTGTGGTGCCGTGACCAAAGTTGACTCTTTTTTGTGGGTTGTTTCCACTGACGTCACTGCGACCTATGcatttacccacaatgcaaaGCATTTATATCTATGTGCTCATTGTAATTCCCTAGCTAAATACCTTATGTATTAGTTCTGTCATGATAGCCTTCTTACCTGaaattcaaaatataaatttctTAAAGAAGAACTTGTTAAAACACATGAGGAAATACTCATACAAATGTCctacattcactcattcaccaAAGACgactctttctttctataagaaataaattacaatccgttattttctattctgataaaatttCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480163 lncRNA downstream 151736 12686190 ~ 12686468 (-) True G404719
XR_003403574.2 lncRNA downstream 160558 12663011 ~ 12677646 (-) True LOC113535190
TU480136 lncRNA downstream 202991 12601632 ~ 12635213 (-) True G404692
TU480131 lncRNA downstream 246671 12589272 ~ 12591533 (-) True G404687
TU480125 lncRNA downstream 259398 12576532 ~ 12578806 (-) True G404682
TU480265 lncRNA upstream 19319 12874811 ~ 12942105 (-) False G404799
TU480293 lncRNA upstream 58449 12913941 ~ 12923945 (-) True G404818
TU480384 lncRNA upstream 128221 12983713 ~ 12984373 (-) True G404896
TU480388 lncRNA upstream 136709 12992201 ~ 12993258 (-) True G404900
TU480392 lncRNA upstream 143751 12999243 ~ 13002077 (-) True G404904
XM_026928313.2 mRNA downstream 2732 12816071 ~ 12835472 (-) True setdb1a
XM_026928314.2 mRNA downstream 2733 12816071 ~ 12835471 (-) False setdb1a
XM_034301683.1 mRNA downstream 24775 12795731 ~ 12813429 (-) True clk2a
XM_026928253.2 mRNA downstream 24775 12796845 ~ 12813429 (-) False clk2a
XM_034301684.1 mRNA downstream 24775 12796845 ~ 12813429 (-) False clk2a
XM_034301790.1 mRNA upstream 5081 12860573 ~ 12899960 (-) False ash1l
XM_026928440.2 mRNA upstream 5081 12860573 ~ 12899960 (-) False ash1l
XM_026928439.2 mRNA upstream 5081 12860573 ~ 12899960 (-) True ash1l
XM_026928441.2 mRNA upstream 5081 12860573 ~ 12899959 (-) False ash1l
XM_034301716.1 mRNA upstream 60486 12915978 ~ 12926264 (-) True scamp3
trnav-cac_26 other downstream 258553 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 259403 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 260544 12577588 ~ 12577660 (-) True trnav-cac_25
trnav-aac_25 other downstream 261400 12576732 ~ 12576804 (-) True trnav-aac_25
trnav-aac_24 other downstream 263389 12574740 ~ 12574815 (-) True trnav-aac_24
TU480489 other upstream 285202 13140694 ~ 13141115 (-) True G404999
TU480639 other upstream 534472 13389964 ~ 13392735 (-) False dpm3
TU480779 other upstream 700664 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 904269 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 904269 13759761 ~ 13761555 (-) True s100a11

Expression Profile