RNA id: XM_026928434.2


Basic Information

Item Value
RNA id XM_026928434.2
length 2835
RNA type mRNA
GC content 0.47
exon number 9
gene id si:ch211-264f5.6
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14897610 ~ 14917917 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacagttgtggtGACAGTGATATAGTATCCTACATGCCGAACTGTAGTGTTTCTGTAGCCCCTGTGCTACTTAGTGCACGTATATAGGAAGAAGTGGCATATTTGGGACTGAACCTAGGTGTGCGCTGGGTGTGTCTTCCTCCACTCATCAAAGTGACACATCATGACCGAACCTGGTTCCTGGCTGTGACTTGAGAGATACAGACGGTTTACAATGGACTTGTACAATTCGTGGTTGATTTTGTTTCTTCTGGCAGAGACCTGTGTCTGTTCTGGTGCCCAGCTTGTGATGCCAGAAGCGGTGAGCGGCGTGAGGGGCAAAAGCGTGAATTTCACGGCATCAGGTCCTCCTTCGGCTGAGGTCCAGACGGTGACGTGGTCGTTCATCCCCAAACCCGGTACCACTGTTCCCGTGTACACGGCCACGAAGGAGAACGAGAAGGTGTCCAGCGCCTACAGCGGCCGCGTGAACTACTACAGGAGCACGTACACGCTCCAGCTCAACTCGCTCAGGGCCGAGGACAGCGGGACCTACACCCTGACCATCGTCGACTCCAACCTGGACCAGCTGGTGGACCAGACTGTGCTCGTGGTGCTGGAGCCTGTGGCGGATGTGAGTATCAACTCCAACCTCCCTGAAGCAGtggaattcaacagcactgtaatTCTCACCTGCGCCGCAAAAGGGTCTTCTCTCTCGTACAGTTGGCTGAACAACTCCGCTGCCGTGGTGGTGGATGGGAAGCATATAGTGCAGAACGGCAGCCAGCTCATCATTAATGAAGTTTTTCGTACAGATCTGATAGGGCCAATCTCCTGCACAGCCAAGAACCAACTGGAATCTTCAACTAGTGCCCCTTTCAACCTCACCGTCAACTATGGCCCTGAGCTTGTCAGGAAAACACAAGAGCCTACAGCTGAAGTCCTGAAGAAGGGATCCAACCTGACACTGTCATGCTCGGCTCAGTCCAGCCCTGCTGCTGAATTCATATGGCTTTTTAATGAAGCCAGACTTCCCCAGAAGACTGCTACGGTAGTTCTCTCAAACCTGGGAGAGGAGCACAGTGGCAACTACAGCTGCATGGCCTACAACAGCAAGACCCAACGCTATGTCACTTCAGATGTCACCAAATTGTCTGTCCTAGAAGCTATTTCAGGCACGAAAATCAGTGCCCCTACTTTGCGTCTTATTGCTGGTAACAGCACAGTGAACCTTACATGCACATCCAGTGCGGGGAAAGCAGACAGCGTGCAGTGGCAAAAGGATGGCAAACCTCTGGATAATACCAATCGCATCATCTTCACCACGGACAAGAGCACTCTCACCATCCTCACTGTACAGAAGGAGGACGCTGGAGAGTACAAATGCCAGCTGAAGAATAAAATCAGCAGTGGAGACAACAATTACACGCTGACAATCAACTATGGGCCAGAGAATGTGGCAATAAAGGGATTAAAACAGGCCGAGGTGGGCCAGCTTGTGAAGATTAATTGCTCCTTTGCCTCAGTCCCAGCTCCCACATTTGTGTGGAAGTTCAATGACACGGTTCTGCGCGGCGAGGAAGGAGAATGCTTGACAATCTCGGATTTTGAATACAAAAAGAGTGGTATATATACTTGTGAAGCATCCAATTCCATCACCGGACTCAAACAGACTGCCACCCACTATCTCATGGTGAAGGAAGCAGGAGAGCAGGAACCGAATGGCCTGTCTAGTGGAGCAATCGCTGGAATTGTCATAGCCGTTCTAGTGCTCTTGGCAATCATTATCGGTGTCTTCATCCACAAGAGGCGGAAGATTTCAGAtaTTCCATCACCATattaaaggaaagaaaatcTCAAGAAGAACACCTGgATGTGCTAGAACAATTCTTCagccattttgtcttttttaccCACAAGATGATTCCGTGGGGCAGCTGGAAGAACTGCCCTCGTTAGTGGAACACACCTGTAGGGCTggccctctctctcccccacacTGTGTTTCGACCTCAATCCATAGAGATTGTTTTCTCTTCTAGGAATTCCCATCTCTTCTCCACCTGCCCACTCAGTTTCTCTCTGGTGGCCCAGGAAAACCCCACACTGAAATTTGCTCTTCTTCCCACTATATTTTGACCACAGTGTCCTTTACCTTTCACTGAAGAGAAAATGTACActgttttaattcattcaatCTATCTAGATACAACAGATTATGATGGAATAACATCATCCACCTCATCTGTAATGATTCTGGAGAAATTTCTCAGTCTCAAGCTTAGAAGGCAACATAAAATGCCCAGAAGCACCAGAATATTCCATTGCTGGCAGAAGCTGAGAACACAGAGCTTAGTGTCGAGGTCAGCTCTGGTTAACTCTGTTCTCAATTGAATTCTTTCCACTTGTGGTCTTTTTAATATGATGTATGTCTAGATTTGAAGTATAAACAGGGGTGAGTAAAAGATGGAAAATAtgagatttttgtttgtattgaCTAGGGGTTGCACGACTACTAATTTCTACAATGACTACAGTGCTTTTTAGGCTACATTACTAACAATCAAGTAAATAAGTCAATGCAATAAATgcgcaaaataataaatatgtgtattatattgCACTATTTAAGGATATATCTTAATAGCTAAATCATTCTTAAAATGCACCCTTGTGGACAAAATGGTGGCACAGATGAAATCTGAGAGCGCAGCATGGCACTGAAACTCCCTATAGTTTAATGATGATAAAATCCTAGcttaatgatggatggaggTCTACAGCAGCATGGGACGTTATAACGTTCAACTCTCTGTAGGACAGCCAAAGCCAGaacctggttttttt

Function

GO: NA

KEGG:

id description
K06499 CEACAM, CD66; carcinoembryonic antigen-related cell adhesion molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481572 lncRNA downstream 90751 14805181 ~ 14806859 (-) True G405924
TU481579 lncRNA downstream 144318 14749754 ~ 14753292 (-) True G405930
TU481577 lncRNA downstream 149163 14746848 ~ 14748447 (-) True G405929
TU481557 lncRNA downstream 176704 14688023 ~ 14720906 (-) True G405909
TU481565 lncRNA downstream 193298 14700268 ~ 14704312 (-) True G405917
TU481627 lncRNA upstream 100769 15018686 ~ 15019240 (-) True G405967
TU481636 lncRNA upstream 130804 15048721 ~ 15049178 (-) True G405976
TU481641 lncRNA upstream 133772 15051689 ~ 15051897 (-) True G405981
TU481642 lncRNA upstream 134038 15051955 ~ 15052188 (-) True G405982
TU481643 lncRNA upstream 134670 15052587 ~ 15052844 (-) True G405983
XM_026928308.2 mRNA downstream 30012 14860254 ~ 14867598 (-) True gnb3b
XM_026928369.2 mRNA downstream 227570 14652344 ~ 14670040 (-) True daxx
XM_034301734.1 mRNA downstream 260277 14622681 ~ 14637333 (-) True ctdp1
XM_026928370.2 mRNA downstream 282849 14598495 ~ 14614761 (-) True zbtb22b
XM_034301474.1 mRNA downstream 311368 14552044 ~ 14586242 (-) True epb41a
XM_026928222.2 mRNA upstream 13226 14931143 ~ 14964811 (-) False cica
XM_026928225.2 mRNA upstream 13226 14931143 ~ 14964811 (-) False cica
XM_026928228.2 mRNA upstream 13226 14931143 ~ 14964811 (-) False cica
XM_026928226.2 mRNA upstream 13226 14931143 ~ 14964811 (-) False cica
XM_026928223.2 mRNA upstream 13226 14931143 ~ 14964811 (-) False cica
trnat-ugu_15 other downstream 351432 14546106 ~ 14546178 (-) True trnat-ugu_15
trnat-ugu_14 other downstream 354321 14543217 ~ 14543289 (-) True trnat-ugu_14
TU481171 other downstream 777952 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 813764 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 1136055 13759761 ~ 13761555 (-) True s100a11
TU481617 other upstream 49559 14967476 ~ 15013988 (-) True G405961

Expression Profile