RNA id: XM_026928440.2


Basic Information

Item Value
RNA id XM_026928440.2
length 9505
RNA type mRNA
GC content 0.53
exon number 27
gene id ash1l
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12860573 ~ 12899960 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tccctcccctcccTCCTCTCACTGGGAGAATGCCCGTGTTGTACTGACAGAAACGCTACGGGCTCATCAGACATGGAGGCCCGATTAACGGGCAGAGGCCCATTCTCACGCCTTTAAAAACACGACCTTTCGCCGGTCCCTGGACAAGGAAACCCTGGCGACATTTCGGATCATTGCGGTTTAGCGAAGGAACCATGTTGGCACTCATGAAGGGAGGATTTTGATCTGAATGATGTGAAAGCTCGTTTTTGACCTTAAATAAAGCAAGTTTGAAGGTGACGAGGGCTGGGCAGCCAGGAAAGGAAGACATTGCTTCAACCCAACAACTATTACTATATCCCTTCCCATCTTCCACCTCCAGCTGGATTCTGCATCCCCCAGTCCTGTGCTGCTTGTGAGCACATCCTGCTCAGCCCTTCCTTGTTTCTTATATCATCAATGGATCAGAGGACACAAGGAGGGCCCACCACACCACCTCCTCTCCCCGCAAATACCCTACCAGTTGAGTGTGAGAAGGAAGGAGGAGGTGGGAAGAAAGAcgatgaagatgaaaaaaggAAGTGGGAGAAGGAAAGAGATGCGGTGCCGGCTGTTCCCTGCAACTCAGAGAGTGGTGCCGGTgaccaacagcaacagcagtctCCACAGTTCTCTGTCAAAGAGACCAGCTACTCAGAGGGCAATGTCAAACTTAAAATAGGCCTCCAGGCCAAACGAATGAAGAAGCCTCCTAAAATCCTGGAGAACTATGTATGCCGGCCAGCCTTCAGAGCAACGGTTAGACATGGAAGCCGAGGCGGTGGACGAGGCAGTCGTCGAGTGGGACCCGCCGATGGTAGTGGCAACAATCCTAGTGTGCCACATATTAAAGAAGCAGAAAAGGACCCCACTGTAAACCCGGGAGCGCCTCAGTCATCAGGCGTTCCATCCAGTACTGCACCTAcaccttctcttcctccttccaCTTCCACTAGCCCTGAAACGCCTGTGAATGGGAATACCCCAGCTAAAAGAGGTCCTCCGAAGTTGGCTTGCAAGTCAGAAGGAAAGGCAGATGTGAAATCCCTTGCATCTTCAGAAAAAACCCTTAACAGTCACTGCCCTGTATCAGACAGCAAATCACACTCCTCTGGAAAAAAGAGCCTTGTACCCCAAACCAACCCACCTGCTCCTTCACTATTAACTCCTTCCCCCAGTGCATCTCCACATGACCCCAAAATTGATGGAGTCACAAAACCGCCTCAGTATCCTTACACAGATAGCCAGAGGGAGCAAGAAAGAGGAGCTCCAAACTGGGGTACTCCTACAGTCACTGAGAAACTCGCACAGCTTATAGCCACCTGCCCACCTACTAAGTGTCCTAAGCCCAAAGCCCGGAAAGTAACCCCAGCTCCAGCACACAGCAGCTCACCTCCCCTGATCTCCAATTTGCAGCGGCCTGAGCGGGCCATGGCCAACAGGAACACGTATTCCAGAGTAGCTCATCTTGCCCCTCCTCCACCTGTGTCACGGCCCCCAGGTCGTCCATATGGCTCACGAAACAAAGACAGTATCCTGGAGAAGTTATCTGGCATACCTAGAAAAGAGGAAGCTGGAGGACTTTCAAAAGAGATTACAAGTAGCAACAGTAATGGCAGCAACAACATTCCTGCAGTGTCTTATAGCAACAGTCGCTTAACAACGAATAATGATAGCAACGACGATGATAATAGCAATGGAATAAAATCACAGTCTCGTCTTGGGCAACATTCATCCACaccttctcttttctcctcttccttAGAGAGAATAGGGAGTGGGATCAGCCACCAGGTGATGCCTTCCTCACTTGGATCAAGGATCAGTGCAAGCCCCTCACAAACAGAGGAACCCActgatagagagaaagagagggacaaGGACATTTTTAATCTCAGAGAAATAAGTAAAGGATCTTCCCCTGCATTGTCAGGGAAGCAGGACACTAAAGAGAAGGGGCCCTTCTCTGTACCTCGAGCAGAGAGGGGAAAAAGCTTAAGTCCACCTAAACGAAGTCCTGCACAAGAAAGTCATGCTAGTGGAGAACATAGCCCTGCTGAGACCACCAAACGCACTGCTTCTCCTTCTATCCCTACCGGTTCTAGTAGCAGCCTCTCACCACTTTGTGATGACCATGACCATGACCATGACCCTGCATCCCCTGGATCACCAGCAGAACAGGAGTCTAAGCCTCTGAAAAAGCGGAGGGGTCGAAGACCTCGCTGGACTAAGGCAGTCAGTCGCACACAAAGAGCGATAGAAGATGCTTCTCCTAGTCAAAACAAATCCACCACTCTGCCTACAGACCTTTCATCCTCCCCACCCATTCGTCGGCCTGTGGGAAGACCACCCAATGCTAATCGCGTTCTCCCTATTGTCTCTGAGCTCTATTCCCCACCACCCAAGAAAAGAGGCCGGCCTAAGTCCAAAATGCCAACACTGGATGCACCTACACGTGGTCGTTTGCCTCTCaaagtgacacccacaaaagtATACTCCATGTCCAAAGAGGAGCAGGATCCCCCTGTCTTGCACCCAGAGGTGGATCTGAATCCTCCTAAACCCATGCCACGAAAGAGAGGAAGACCGAAACGCTTACCTCCAACCCTGCCACAGGAGACCCAGCCTCCAACACTTGCTCCAGAGTCAGGGGATACTGTGGCTGGTGACAAGGGCTTTCACAACAAAGGCAATGGGCAGCTCATAATGAAGACAATTATAGGCAAGATCAACAAGATGAAGACTGTAAAGCGGAAGAGGTTTCTCAGCCAGATCCTGTTGGGGTCAGGATCGGGAACTGAGCCGGAGGTCACTAAAAGTACAGGCATGTCGGGGACAGTGGCTTCTGCTTCACAGTCTCTCTCAACCCTTGCTGCAACATTTGGTGGTAAACTTGGACCTCAAATCAATGTAAGCAAAAAAGGGACAATATACATGGGTAAAAGAAGGGGCCGCAAGCCAAAAGCACCAGCCAACAATTCACCGGGTGCCCCTACTCCACCACCCGAACCTTTTTTGACCCCAAACACTTCCTCCCCACACCACTCACATCAGTCTTTGGCTTCACAAAACCAGCAAAACCAGATTCCCCCCTCTGACATTTTTCCCTCCCCTTCACTTTCCCAGTCTAGTGGGGGGCAAAGCCCCATCAGCGACGCTAGTTTTGTGGACCCAGGGTCAGTCCACTTGATGTCCCACTCACACTGTAGCCACCACTCATTTTCCTTTACCCCACCAACTCTTTCAGCACCCTCCCCACGTTCCTTAGGAGGTTCCACATCTTCGCACTCCTCTCAGAAGAAGCCTTCTTGCAGAggtcaccaccatcaccaccaccactaccgaCATTACCATTGCCGCAAGCTCTCACCTCCCAGGCCCCTATTGCCTACATCCCCTGCTCCTCTTAGTGAGCTGAAGGAGGCCACACCTTCCCCAGTCAGTGAGTCACACAGTGAGGAGACTGTGCCCAGTGACAGTGGCATTGGAACAGACAACAACAGTACATCAGATCGTGGGGAGAAGGCTGGGAGTGCTAGTGGGCTAGCTGGGTTAGGTGTCTCACAGAGTATGACCAATGGGCTACTAATGCCTGGAATGATGGGGTCATCAGTGGGTCTCGGGGTAGGGCATAACCCCAGAGGCAGTAGGAGACATTCGTCTACTGTACTACTTGATTGTCCTTCACCCACACCATCCCCATTGGGAGAGAGGTCATCAGCTGATCCACGGCGACCACACCCATTGGCTCCTGCTTCAGCACTAGTGGGCCACAAAGAGAAGCATAAACATAAGTGCAAACGGCGTGGGCATGGATGCCCAGGCTATGATAAGTTGAAAAGGCAGAAACGCAAACGCAAGAAGAAGTACTTGCAGCTGCGTTCACGGAGACAGGATCCTGACTTCCTGGCCGAGCTTGATGAGATATGCGTACGGCTTTGTGGAATACGAATTTCACACCGCACACCTGCTCTTCGTCTGGGCAGCAGTCTGGGTCTCGGTGCAGGAACAGCTGGCACAAGTCATGGAGCTGGTTTGGGTAGTACCAGAGCAGGCAGTAGCATTGGCGGTGGCAACAACCCCACATCTCATCATTACCTCCATAGAGACCTTTTACCCACGATCTTCAGGATCAACTTTAGTGGGTACTACTCACCCCACCCAGCCTACCCATGCGATTCCCTGCACTATGTCCGTAAGCCTGATCTTAAGAAAAAGCGTGGAAGGCCCCCCAAGCTTCGAGAGTCAATGTCAGAGGTGCCTTTTGTTCCTGGGCTAGGGTTCCCCCTTACCAGTGGAGGGTTCTATCACCCTTCTTATGGAGTTCCGTACTCCTCAGCCCCGCTTGGACTTGGTTATTATCGGGGCTATCCCCCAGCAAGTGCACTGTATCCCCACCCTCACCACCAGGTTCCACATTCTGCCCCATCTCACCATGGCCACCATAGCCCTTCCTTCcctccgcctcctcctccttcatatgttcatcatcatcatcaccctcCCCACCTGCTTCTCAACCCTTCTAAGTTCCACAAGAAAAAACATAAGCTTCTACGACAAGAGTATCTCAGTGGGGGACGTTCAGCAGTGCTGTATCCTCCTATGTCTTCTGAACTGTCATTTAGCTGGCaccacaaacacaagcacagacaTAAACATCGTGACCGCTGTGGTGAGGAAGAGGGCGATGATGGTGGAGGAGTTGGTAGTGGTGGAGGAGGGAGAAATGGAGGCGAAGGCATGGGAGCAGGAAGAGGGGACCGAGGGAGAAGAGGGGGAAGCATGGAATCACTCAAGCAGTGCGGGTATGGACCGGATGGCTCAGCTGACTCCAGTGCTAACAAGCAGGCAACTGCCACCTCTGGAAACTCCCCCTCTTCCTCCTCGTCATCTTCAGCAGAAAGGTACAAGCAGAAAGAAGCCTCTATGTCCTGTCTGGTGCCTTCAAGACTATCCTTGGGCCAAGGGAGTCGGGGGCACCATCCTTCGGACTCATGGTTCAGGATTGGCAGCTACGACGTTGATTACTCCAAACTCTCCCACAATCAGACCCTTGGGCAGGGGGCATTCTCTGATGGACATGTGCATAACTCAATGGGTTGCTCAGACAGTGAGGATGAAGATCACACTTCACCAAATGAGGAACAGGACTCGGGCTCCCACCACACAAACCTTTTTGCTTCAGCCCTCACTCGGACTTCTCTTAAGTGTAATCAGGGCAGGAAAGGTGGGAGCTCAGAGGGCTCAAGTCTGACGCGTTTGGACAGATCACTAAGGAAAGATCTCTCCACATCTGCTGAGAGGAGAGAGTCAGGAAACTGTGGTATACAGACACGATACAGTCAATTCAGCGCACCCGATTTTTCGGAGGCTCCTCCCCACAGACATCATCACCAtactcctctgtctgtctcccacTCGTCCTCCTGCGTCTCTACCTGTGGCCTGGAGCAGCCAGGGGGAAGTCCGTCTGCGCGCTCTTCACAGCCTGCATGCTGCTTGGACTCCTCCCCTTCCCGTCCTTCCCAACGTTCAGCCCCACCTCCTCCCAAGAACAACTTGCATCATGTCAACAAGATCCTCCGGGCCAAGAAGCTGCAGAGGCAGGCGCGCACAGGAAATAACATGGTTAAGAAAAGGGGACCGGGGCGGCCCCGCAAGAATCCGCTACCCTCTCCATCAGCATTGCCTCCAACGTCACCTCCACCTCCGGAGCCCGAACCCGAGAAGCATACTAAAGAATGGGAGGAAGACACAGTTACAGATGCAATCGAGTCTGTTATACAGAGGCAAAAACGAAAGGGCCGGAAGAGGAAGCGCTGGGATAGGGACAGGGATGAAAACggagaggatgaggatgagacaGTGCATGAgagggaggaagaagaggaagaggaagcaaGGCCAGAGGCCAGAGAGGAGGAGGCGGTGACACGGGCACAACCAGCAGGAGGGAAAGGATGGCTGGCACATGAGGAGATGCAAAGCTTTCAAAGTGCTGTGGAAGGAAAATCTGATGGCCACTCCTCCCCTGAACGCACAGGTCCAGCCCCCATGGTACAAGCTCCACCCACATCAGTGACTACCCAACGGGAGAAAAAAGCTGCTAGGCCACCCAAGAAGAAATTTCAGAAGGCTGGCCTTTATTCCGATGTGTACAAGACAGATGATCCTCGTGGTCAGCTGCTACAGCTAAAGAAGGAGAAGTTGGAGTATATTCCAGGTGAACATGAGTATGGCCTGCTTCCTGCTCCTATTCATGTTGgGAAGTATTTGAGACAGAAGCGCATAGATTTCCAGTTGCCTTATGACATCCTGTGGCTTTGGAAACATGACCAGCTGTATAAGAGACCGGATGTCCCTCTCTACAAGAAAATAAGATCCAATGTATATGTTGATGTAAAGCCACTCTCAGGCTATGAAGCCACGACCTGTAACTGCAGGTGCCCTGAGAACCAAAGTGCTAAGGGCTGCTTGGATGACTGCCTTAACAGgatgaTTTTTGCCGAGTGTTCCCCCAGCACTTGCCCATGTGGAGAGCAGTGTGATAATCAGCGAATCCAGAGGCATGAGTGGGTTCAGTGTCTGGAGCGTTTCAGGACAGAAGGAAAGGGCTGGGGCATCCGCACTAAAGAGGCACTGCGTTCTGGCCAGTTCATCATCGAGTACCTCGGAGAGGTGGTCAGCGAGCAGGAGTTCAGGTTAGCCACACACTGGCTTCAGAGATCAAGAGTACCATTTGGGAGTCGAATGATGGAGCAGTACTTCGCTCACAGCGGTCAGTACTGTCTAAATCTGGACAGTGGTATGGTGATTGACAGCTATCGCATGGGCAACGAGGCGCGCTTCATCAACCACAGCTGTGAGCCCAACTGCGAGATGCAGAAATGGTCAGTGAATGGGGTGTACAGGATCGGACTGTTTGCTCTGAGAGACATGGACAGCGGGACGGAGCTCACTTACGACTACAATTTTCACTCCTTCAACACTGAAGAGCAGCAAGCGTGTATGTGTGGCTCGGAAGGCTGCCGTGGCATCATCGGAGGAAAGAGTCAGCGAATCAACGGCCTTCCTGGCAAAGCGGGAGGATCAGGAGGCGGGGCACGAAGGCTCGGGAGGCTGAAAGAGAAGCGCAAATCAAAGCACCATCTTAAAAAACGGGAGGAGGAGTCCAGCGACAGCAGCAAGTTTTTCCAGCACCTTCTGATGAAGCCGATGTCTAACAGAGAGAGGAACTTTGTCCTGAAGCACCGAGTGTTCCTGGTGCGCAACTGGGAGAAGATGAGGGACAAACGGGAGCTGctgaagagagagggagagagggagcgagagaagGACAGCAGCCTGTCACAGTACGCCCGGTGGGGAGGTGTCATCCGTGACGACGGCAACAtcaaatcagACGTGTTCCTGACGCAGTTCTCAGCATTACAGACCTCTCGTTCGGTGCGCACACGCAGACTCGCCGCTGCTGAGGAAAACACCGAAGTCACTCGCACAGCTCGTCTCGCGCACATCTTCAAAGAGATCTGTGACATGATCACCAGCTACAAGgattCCTCAGGCCAAACTCTTGCAGCTCCCCTGCTTAACTTACCTTCAAAAAAGAGgaACATGCAGTACTATGAGAAGGTGTCAGATCCTCTGGACCTCAGTACCATAGAAAAGCAGATCCTCACCGGACATTACAAAACAGTGGAGGCCTTTGACACAGACATGCTCAAGGTGTTCCGCAACGCCGAGAAATACTACGGACGGAAGTCTTCGGTGGGCCGGGACGTGTGCCGGCTGCGTAAGGCGTACTACGGCGCGCGACACGAGGCCGCGGTGCAGATCGACGAGATCGTCGGCGAGACGGTCAGTGAAGCGGACAGCTCCGATTCGATGGACCGCGACCACGCTCACCACGTCAACAAAGATGATGACATCATCCGCTGCATCTGCGGCATGTACAAGGACGAGGGCCTGATGATCCAGTGCGAGAAATGCATGgtctgGCAGCACTGTGACTGCATGCGTTTGGAGGCTGAGGTGGAGCATTATCTTTGTGAGCAGTGTGACCCTCGCCCAGTAGACAGAGAGGTCCCTATGGTGCCTCAGCCCAGTTACGCGCAGTCAGGTTCCATCTACTATATCTGCCTTCTCCGGGACGAGCTGCTGCTACACcagggtgaCTGTGTGTACCTGATGAGGGATAGCAGGCGCACTCCGGAGGGCCAGCCACTGCGCCAGTCCTATCGCCTCTTGTCCCATGTCAACAGAGACAAACTGGACATCTTCCGCATTGAGAAACTttggaaaaatgaaaaGGGCGAGCGGTTTGCTTTTGGTCATCACTATTTCCGACCTCATGAGACCCACCACTCGCCCTCGCGCCGCTTCTACCATAACGAGCTGTTTCGAGTGCCGCTCTATGAGATCATCCCTCTGGAGGCAGTGGTGGGAACGTGCTGCGTCCTGGACCTTTACACCTACTGCAAGGGTCGGCCGAAAGGCGTGAAGGAGCAGGACGTGTACATCTGCGACTACCGGTTAGACAAATCTGCTCATCTTTTTTACAAAATCCACCGCAACCGCTACCCAGTGTGCACCAAGTCCTACGCCTTCAACCACTTCCCCAAGAGACTCACACCCAAAAGGGACTTCTCACCTCACCACGTTCCCGACAACTACAAGAGGAACGGCGGACGTTCGGCCTGGAAGAGCGAACGCTCCAAAGGGGTCGGGGCTTGCGATGAAGACCCCTCCCCCAGCGGGTCATGTGACCAGCTGTCCTTCTCAAGAGACGCAGAAGGAAGAGGAGCGGGAGGACACGCGGGCTGTAACCACGAGGAGTCCTCCACCGCGCTGTCCGTACTGGCACCACCGCAGGAGCAGCGGAGGCCTGGCGAGGacgaagaggaggaggaggacgaagAGTTGGGTGAGGAGGAGGGTGAGAggagggaggtggaggaaagCTCCGTGGAGAAAGGAGGAGCAGAGGCGTCCTCGCTCTCCTCTTCACCGCTGCATCTGTCCGTTTTGGGACGGAGGGAAGCACAGAGGGAACGACTCAACAAGATCCTGCTGGACCTTCTGCATCGGACCCCCAGCAAAAACGTTATAGACGTCACTTATCTTCTCGAGGAGGGCTCTGGCCGCCGCCTGCGCAGACGCACACTCGGGCTGAGCGACTTTGTGAGCAGGAAGTGATGGCATCACTGCAGGTGACGAGCAGAcagcaaaaaaagaacaatatgCAGGAACAGCAAAAGAGGGATGAAGGTATGAGAAAGGAGAGACGCTTAAAGGCTTAGAGGCTCTCCCTTTCAAAACATCTGTCCTCCATTTTGCTCTATTTTTCCTAAATGAACTAAAGAGAGACTCGTGTATGTGCACAGGacatgaggttttttttgtttgtttgttttttttgccagcAATGAGAGAATTATTGCCttgatgcatttaaaaaaaaaaaaaaaaaagtatgttgcAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480163 lncRNA downstream 174105 12686190 ~ 12686468 (-) True G404719
XR_003403574.2 lncRNA downstream 182927 12663011 ~ 12677646 (-) True LOC113535190
TU480136 lncRNA downstream 225360 12601632 ~ 12635213 (-) True G404692
TU480131 lncRNA downstream 269040 12589272 ~ 12591533 (-) True G404687
TU480125 lncRNA downstream 281767 12576532 ~ 12578806 (-) True G404682
TU480293 lncRNA upstream 13981 12913941 ~ 12923945 (-) True G404818
TU480384 lncRNA upstream 83753 12983713 ~ 12984373 (-) True G404896
TU480388 lncRNA upstream 92241 12992201 ~ 12993258 (-) True G404900
TU480392 lncRNA upstream 99283 12999243 ~ 13002077 (-) True G404904
TU480404 lncRNA upstream 118633 13018593 ~ 13021304 (-) True G404916
XM_034301515.1 mRNA downstream 5081 12838204 ~ 12855492 (-) False lrrc71
XM_034301516.1 mRNA downstream 5081 12838204 ~ 12855492 (-) False lrrc71
XM_026928427.2 mRNA downstream 5081 12838204 ~ 12855492 (-) True lrrc71
XM_026928313.2 mRNA downstream 25101 12816071 ~ 12835472 (-) True setdb1a
XM_034301716.1 mRNA upstream 16018 12915978 ~ 12926264 (-) True scamp3
XM_034301717.1 mRNA upstream 16018 12915978 ~ 12926237 (-) False scamp3
XM_034301498.1 mRNA upstream 37264 12937224 ~ 12946377 (-) True crabp2b
XM_034301473.1 mRNA upstream 187527 13087487 ~ 13091746 (-) True LOC117596411
XM_026927904.2 mRNA upstream 489956 13389916 ~ 13392833 (-) True dpm3
trnav-cac_26 other downstream 280922 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 281772 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 282913 12577588 ~ 12577660 (-) True trnav-cac_25
trnav-aac_25 other downstream 283769 12576732 ~ 12576804 (-) True trnav-aac_25
trnav-aac_24 other downstream 285758 12574740 ~ 12574815 (-) True trnav-aac_24
TU480489 other upstream 240734 13140694 ~ 13141115 (-) True G404999
TU480639 other upstream 490004 13389964 ~ 13392735 (-) False dpm3
TU480779 other upstream 656196 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 859801 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 859801 13759761 ~ 13761555 (-) True s100a11

Expression Profile