RNA id: XM_026928448.2


Basic Information

Item Value
RNA id XM_026928448.2
length 4088
RNA type mRNA
GC content 0.43
exon number 11
gene id pbxip1a
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13761655 ~ 13771533 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGAAGGATCTGATTGGCTAGTTCCTTCTGACGTCACTGGACACCATGCAGCTGTAGGCGGAACGCACCGCGGAATTCCCGAAGTTCCCAACTTTGGACGCACGAACGCATCGAAAAGATTTAAACAAAGACGGACGTGGAGAGAAGGATTTTCTGAAATTGCAGTTTATAAATACGTTGCTGAGCCGGCCACACTGAAGTGATGTCGGATAACAGCACCGGCAGCAGCGGCTCATCCAGTAACAGCTGgactctcctctctcctgaGgagGCTGCCACTGATACTGCTGGGCCAGTAGATGATGGAACTGAGAGTATTGGTGATGTACCAAGCCTTTCAGAGGAAGTTGCAGGAAGCTCTTTTGAGGTGAAGCCAAGTGATAGTGAAGCTCCACAGGAGACTGTCTTGTCAGAAGAGGGCCACCAGGTTTGCCAAGAAACATCCCCAGAATTATTTGATGAGGGAGCAGTGTCTGGTCCAAGTGTTGAGGATGATCCTGAGATTTGCGCACCAGTCATCCACGCTACTATCACAACCTCCCCACCAGACAATGATCTGCTTGGAGCAGTTCCCTTTAGCCTAGCTACTGAGTCATCCCTCTTTCTTTCACAGGGGCCTTTCCTTGAAACATCCTATGAAGAGTCTTTATCTGACGTACTCCCTACCTTTGATTTTTCACCCAAACAATGTCCCGTCCCTGAAGTTGTAGCTGAAGCCACACCTGAATTTGTGGATAAAATTGGCCCTGCCTCAGAACCTACAGCCGAAGTTGGTCCTGCCTCAGAACCTACAGCCGAAGTTGGTCCTGCCTCAGAACCTACAGCCGAAGTTGGTCCTGCCTCAGAACCTACAGCTGAAATTGGTCCTGCCTCAGAACCTAAAGCTGAAATTAGCCCCGCCTCAGAATGTACAGCTGAAATAACCCCATCCCCTGAGCCCCTAGAGTCTTCTTTTTCTGAAGTTACTGCAGATGTATGCCTTGTCTCTGACATTAGTCATACCTCTGCCATCCCTGTGTTAGATATTCACACTGGGGTAAGCTCCCACCCTGAAAGCTCATCTCCTAGTCTGTCTTCTGAAGTTAATTTTAGCTATGCAGCTGAGAGCCCTTACCCAGAAACACCTGCTTCCTTGGTCTTGGAAGAGAAAGAGCTTGTAACTGACACAGAGGAACATAAATCCATATATGTTGCAAGGGATGCAGAATCTCTTGGCACCGATGTGCCGATTGAACACCAAAGAGAGGACAGTGGACTGCGGCAGCGACGTGTGCACTATCCTGAGGAGCTGAGACAGAGCTCGGATGAGGAAGATGGGGAGGAAACAGAGTTTAAGCTACAAGACAGGAAAGAAGAGAAACCTGGCTTATCGATGAGTCACCTGATCGTAGGAGCTCTGGCACTGTTGTGtctaggctctttttttttctctgGTACCATTTTCGACCAAGCCGGTGATGACTTTGATGGCTCAGAGTTAAGTGACAAGGAACTTCTTGAAAAACTTGTTGAAGAAAACAAGCAGATTTCCATACTGGAGGCCCAAATACAGGCACAGAAGGAAGAATTGGACAGGGCATTGAGGGCAACTGCAGAGAAAGGAATCACTGACAAAGAACATGCTAGGATGAAAGAGGAATTGTCTGCATTGCCAAGCCTGAAAGAAGAATTAGAGACACTTAAAACTAGGGTCTCTGAGCTCACCCAACTCACAGGTGAGGAACCCTCAGAACCTTCTCCTGGTTTTTCTGGAGAAGGTCAAAGTCCAGCAGGGCCTGACAGAcggtgggggaaaaaagatgagCTCAAGAGACAAAAGATTCTCTTGGAACAGAGTAAAACAAGGTTGGAAGGAATGAAAAAACAGGACTGGCCCAAGAAGTGGTTACGAGAAAGACTGGTTGAGATGCAGCAGAGATTATCAGAACAGGTGGACCGCATAGGCAAGAAAGATGAGTGGAGGAAGAAGCACAAAGGaggggaaaataggaaaaatgagTGGGGTGACAGTGTCCAAAGGCACAAAGAGCTCTTAAAAAAGTACAGTGACGAGTGGGAGCATAAGAAGGCCGAGAGgaagctggagagagagaggaggaagcaGGAGAGGTCTTGGCAGGCCAAGCAGAAGCATGATCATAAATTGCACCAGCACCATGAATCAAAGGACTTCTGGAAACATCAAGAGAAGAAGCTCAGGAGAAACCAAAATCCTCCTGAACACTGCCATGATGTGTCAGACTGCGCTGAAGCAGAAGGCCTCGTTCGTGTTAAGCTGTCTGATTTTCGGGGCCTCCTGGACATCTACCTGAACAAATTGCAAGGGCTCAGTGCGGAGAATAAGGAAGCTTTCCATCATCTTGTTGCCAAGTTTTTCCATGGTGGCATCTTCAGCCACGACAGAATGCTCTTCAGTGAGTTTGCAGAAGACGTGGCCGACATCTTGGAGGACCTGGCGGATGTTCTGATGGACGATGATGTgctggaggaggagatggaagAGTTTGAGAGGGAGGTGCTGTGGCAGTTTGCTGCGTAGAGCAGCAAGTTGGAGCAGTACTGAGGAGGATAGCACATGAGCCATATGACGTAAATAAAAGATGCCACATGATGATGAGTAGTGAGCAATTCTCTCACTATACATAATTCATTTCCCCAAGCTATatgacagtaacagtaatatGCCTATAGTATGAGGAGTGTGTTTCTGGAGTCTTTTATAAAGTTCTACCAGTAATTTGGATGGAAAAAACCATCACACCAACATGAGAGgtctgagaaataaaacaagtttCCCCAAGCTACATGTACTAACTGCAGTATGCTTGTAGTGTTTGTAAGCGGCATGTTTCTGGAGTCATTTAGTAAAGTGTCTTCTGTGTGATGGGTGTCATACACTACAATAACATATACTATTGTTCTTAAAAGCTACAACCCTGGTTCTTGCTTACTGTGTAAAGCAGTAGTTAACTTTAACAGTAAATTGTTGCTTTTTGCtgtcaattaaaataaaatcatcctCAGTACATAACAGTTCTGTTGACCCAAATAGTGAATATGTTAAGCTGCCCTGGGCTACAATATAAGACACAGATGAAggaatttgtgtgtatgtatttgtccATTTGCTTTGGACAACCTTTCTGTACCTGTTTACACTCACACCATAGAATCACTGACTGCTCAAGTGCCAAACTGGTTTCTGTCCTGCGTACATATGACCTTCTCAGCACGACATTTTAGAGCTTTTTAAGTTTTGttgtgaagctttttttttctactttgcATGCTAGCACTTTTAATTGCTGAACTGATATGAAAAGACAGTAACATGCTATCTTCACCTTTATGAGTTTGAATATCTGCACATCAGAACAAATTCAAGAAGTTCAGTTAACATCTGTGCTGCATCTTACTGACGTACATTGTCAGCTTTGTGCATTGTAAGTTACAGAAGTAATTATCTGaagacatgtttttgttttgctgttgtgccTTTTGTTGTTTAAGTGAGATGCTGGGTGTCAAATTAAGCCTCCCAAGATCTCACTTACAAGGAGTTAAAGATATTTTAGATAATTATTTTTGTCCCTGTAATTGGAGcctggttatttattttttgtttgtctcttCTTCCAAGCTGAAGAAAATGTCTGCCATATTAAATCTGCAAATCAGtttttcagtctttctttttgcaCTACAATGAATGATTATGTATAAATTGAACTTTTTCAGAGCCAAACTGTAATTGTAAAAACATCACTAAAATTGGACCATGTTAATACACTACAGTTTAGGACACAATCCCATGTCAATGGTAACCTCTTTCATGTAAGAAATTAATTTATGATCATGCAATGGCTGGCCTCGGACAATAAATTATAGGTCACTATGAAtggttttaaatatgaataaaattaataatatattccaTCAGGAAAATATATTACTTTAAACTAGATTTTTTTAGATGCATCATTGCATCTAAAACACTTAGGactattatattgtattaaatgCTTATAGTCTGCTTATGATCTGTACATGTTAATAATCTGCCAATTAAAAGAGTGTCACTATGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480934 lncRNA downstream 25907 13735536 ~ 13735748 (-) True G405386
TU480913 lncRNA downstream 55113 13655405 ~ 13706542 (-) True G405368
TU480893 lncRNA downstream 155763 13601027 ~ 13605892 (-) True G405353
XR_003403560.2 lncRNA downstream 197706 13559889 ~ 13563949 (-) True LOC113535067
TU480772 lncRNA downstream 217250 13542003 ~ 13544405 (-) False rps27.1
TU480985 lncRNA upstream 36950 13808483 ~ 13814892 (-) True G405419
TU480986 lncRNA upstream 44365 13815898 ~ 13872428 (-) False G405420
TU480987 lncRNA upstream 44365 13815898 ~ 13869755 (-) False G405420
TU480988 lncRNA upstream 44365 13815898 ~ 13839833 (-) True G405420
TU481157 lncRNA upstream 304909 14076442 ~ 14077150 (-) True G405575
XM_026927989.2 mRNA downstream 98 13760165 ~ 13761557 (-) False s100a11
XM_026928109.2 mRNA downstream 3227 13752813 ~ 13758428 (-) True s100u
XM_026928110.2 mRNA downstream 11153 13746880 ~ 13750502 (-) True s100s
XM_026928111.2 mRNA downstream 11190 13746879 ~ 13750465 (-) False s100s
XM_034301583.1 mRNA downstream 11209 13746878 ~ 13750446 (-) False s100s
XM_026928451.2 mRNA upstream 11429 13782962 ~ 13804588 (-) True LOC113535216
XM_034301581.1 mRNA upstream 154302 13925835 ~ 13999667 (-) False oxnad1
XM_026928261.2 mRNA upstream 198063 13969596 ~ 13999667 (-) True oxnad1
XM_026928260.2 mRNA upstream 203143 13974676 ~ 13999667 (-) False oxnad1
XM_034301580.1 mRNA upstream 205389 13976922 ~ 14000665 (-) False oxnad1
TU480965 other downstream 100 13759761 ~ 13761555 (-) True s100a11
TU480964 other downstream 139 13759761 ~ 13761516 (-) False s100a11
TU480779 other downstream 203035 13556156 ~ 13558620 (-) False cks1b
TU480639 other downstream 368920 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 620540 13140694 ~ 13141115 (-) True G404999
XR_004577571.1 other upstream 309839 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 343086 14114619 ~ 14119658 (-) True G405588
trnat-ugu_14 other upstream 771684 14543217 ~ 14543289 (-) True trnat-ugu_14
trnat-ugu_15 other upstream 774573 14546106 ~ 14546178 (-) True trnat-ugu_15
TU481617 other upstream 1195943 14967476 ~ 15013988 (-) True G405961

Expression Profile