RNA id: XM_026928451.2


Basic Information

Item Value
RNA id XM_026928451.2
length 2571
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC113535216
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13782962 ~ 13804588 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTCAATAGCTTCCTCTGACTCATCTTTTCATCCCCTCCCTATTGTATCACACGTTGTCTCTCCTTTCTGTGTTTTCctcttctctgctctctctctttcacccattggctcattctctctctatccattttttttctcagcctgTCTCTTTGCTTAGGGTTTTCCGGCTTGCCTTTGGTGAGGTTACAAACGCACAGACGGCAGGATGTCCATTGTAAGCATCATTGCCAGGGAGATCCTGGACTCTCGGGGAAACCCCACAGTAGAGGTGGACCTGAGGACTGAAAAAGGATTGTTCAGGGCTGCTGTGCCTAGTGGAGCATCTACTGGCATTTATGAAGCTCTAGAACTCAGAGATGGAGACAAGAGTCGCTTCAAGGGCAAAGGTGTGCTCAAAGCTGTTGGCCACATCAATGACACTCTTGGACCTGCCCTCATTGAATCTGGGATCAGCGTGATGGAACAGGAGAAACTGGACAACATGATGATCGAGATGGATGGCACAGAGAATAAATCTCAATTTGGTGCCAATGCCATTCTGGGGGTCCTGGCTATTTGCAAAGCTGGAGCAGCAGAAAAAGAAATTCCCCTGTATCGCCATATTGCTGACCTGGCTGGAAACACAGAACTAGTGTTGCCAGTTCCTGCCTTTAATGTGATAAACGGTGGATCCCATGCTGGAAATAAGCTGGCCATGCAGGAGTTCATGGTGCTTCCTGTTGGGGCAGAGTCATTTCGTGATGCTTTGCGTGTTGGGGCTGAGCTCTATCAGACTCTGAGGGGAGTGATCAAGGAGAAGTACGGACAGGATGCCACTAATGTGGGTGATGAAGGAGGTTTTGCCCCAAATATCCTTGAGAATAGTGaagCACTTGAATTGATTAAGACTGCCATAGACAAAGCAGGTTTCACAGACAAGGTTGTGATTGGGATGGACGTAGCTGCTTCTGAGTTCTACCGTGATGGGAAGTATGATCTTGACTTCAAATCGCCTCCAGATCCTGAAAGAAACATCACTAGTGAGAAGCTCCTAGAGATCTACCAGAGTTTTGTCAATGATTTTCCAGTGGTATCTATTGAGGACCCCTTTGATCAGGATGACTGGGCAGCATGGACTCGGATGACTGGTTCTGTGGGGATCCAGATAGTGGGTGACGACTTAACGGTGACAAATCCAAAGAGGATAGAGAAAGCAGCAGAGGAACGTGCTTGCAACTGCCTGCTTCTGAAGGTCAACCAAATCGGCACAGTCACAGAGGCCATCCATGCGTGTAAGCTGGCCCAGGCCAATGGctggggtgtgatggtcagtcaTCGCTCTGGAGAGACAGAGGACACATTCATTGCAGATCTGGTAGTTGGGCTCTGCACTGGACAGaTCAAGACTGGAGCTCCATGTAGATCTGAGCGTCTGGCCAAATACAATCAGTTGATGAGGATTGAGGAAGAGTTGGGCGATCAAGCCCGATTTGCTGGCCACAACTTCAGAAATCCCAGTGCTCTGTGAGATGTCCTGTGGCTACAAAGACCAcacaacaaccaccaccagACAATATGCACTGACTAAGACAGATATAGTACAGATAAAACAACAGACCGAAAAGACATCATGAACAGACACCTAAGGATTATTTGCACTGAACACCTACTGACAACACTTCATATTTGACAGAAGCCCATGCACTGAACCAAGGGGACAACATGCACTTAAATTGGACTGACCACAAACAACTGAGCTAACAATATGCATGGCAGAACCAATACAGACAAGTTTACGCACAAGACATGTCTGACAAGATAGACAGCTAAGTAGTAGGTACAGGATGTAGGACAGACATACACTGACAAAATGATTAGAAAcaatggagagagatggagtaaAAGGGAGAAAACtatgtattaatatgtatagagtaaaatattcaaatttatcTTGGTGCATCAATTTAGTGGATATTGGTTATAATAACAGAATTATTTACCGGGTTGAGTGTGCTTTAAGGAATAGTTTTCTTTATAGTTTGGGTATTGCCTTGTCTGAAGTGTAGTAAACTGCAGTTGAAAAGGGAATGATtcttgacttaaaatatgaagaTGGACAGAAGCTGTAGGTGCATGTAGAGAAAGAAATCAAGAAAGGGAAGagcatgaaataaaaacaaaacaaaacacccaaaacaaaacagaccacACTCTCTTGCAAAGAGATGGACCATCAGcttacacagataaacacacacacacacacacatacacacaagctcACATTTGTGTGGAcgtctctcagtgtctcagtctTTCACTTTACtcccttcatctctctctgctgtccCCTTTATCATCCACCTCCTGCATTCCCTAATCCTTTACTTTCTTGTTGTTTCATTGTCACTGTCCTCCTTTCCTTCTGCCTTTGCTATTGTTGCAGACTTGGTCCACCATGCTTGAATTTCTTCTCTATTTCTCTATATGTGGAATCACTGTGGTCAAagtaaagaagaaaaggagGGAATAAATAACATGCTTGCCATTAAATAATGTTATggattaaaattataatttactCCCA

Function

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0000015 phosphopyruvate hydratase complex cellular_component
GO:0004634 phosphopyruvate hydratase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01689 ENO, eno; enolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480934 lncRNA downstream 47214 13735536 ~ 13735748 (-) True G405386
TU480913 lncRNA downstream 76420 13655405 ~ 13706542 (-) True G405368
TU480893 lncRNA downstream 177070 13601027 ~ 13605892 (-) True G405353
XR_003403560.2 lncRNA downstream 219013 13559889 ~ 13563949 (-) True LOC113535067
TU480772 lncRNA downstream 238557 13542003 ~ 13544405 (-) False rps27.1
TU480985 lncRNA upstream 3895 13808483 ~ 13814892 (-) True G405419
TU480986 lncRNA upstream 11310 13815898 ~ 13872428 (-) False G405420
TU480987 lncRNA upstream 11310 13815898 ~ 13869755 (-) False G405420
TU480988 lncRNA upstream 11310 13815898 ~ 13839833 (-) True G405420
TU481157 lncRNA upstream 271854 14076442 ~ 14077150 (-) True G405575
XM_026928448.2 mRNA downstream 11429 13761655 ~ 13771533 (-) False pbxip1a
XM_026928449.2 mRNA downstream 11429 13761655 ~ 13771533 (-) True pbxip1a
XM_034301496.1 mRNA downstream 11430 13761655 ~ 13771532 (-) False pbxip1a
XM_026927989.2 mRNA downstream 21405 13760165 ~ 13761557 (-) False s100a11
XM_026928109.2 mRNA downstream 24534 13752813 ~ 13758428 (-) True s100u
XM_034301581.1 mRNA upstream 121247 13925835 ~ 13999667 (-) False oxnad1
XM_026928261.2 mRNA upstream 165008 13969596 ~ 13999667 (-) True oxnad1
XM_026928260.2 mRNA upstream 170088 13974676 ~ 13999667 (-) False oxnad1
XM_034301580.1 mRNA upstream 172334 13976922 ~ 14000665 (-) False oxnad1
XM_026928262.2 mRNA upstream 172334 13976922 ~ 14000660 (-) False oxnad1
TU480965 other downstream 21407 13759761 ~ 13761555 (-) True s100a11
TU480964 other downstream 21446 13759761 ~ 13761516 (-) False s100a11
TU480779 other downstream 224342 13556156 ~ 13558620 (-) False cks1b
TU480639 other downstream 390227 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 641847 13140694 ~ 13141115 (-) True G404999
XR_004577571.1 other upstream 276784 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 310031 14114619 ~ 14119658 (-) True G405588
trnat-ugu_14 other upstream 738629 14543217 ~ 14543289 (-) True trnat-ugu_14
trnat-ugu_15 other upstream 741518 14546106 ~ 14546178 (-) True trnat-ugu_15
TU481617 other upstream 1162888 14967476 ~ 15013988 (-) True G405961

Expression Profile