RNA id: XM_026928453.2


Basic Information

Item Value
RNA id XM_026928453.2
length 2181
RNA type mRNA
GC content 0.44
exon number 4
gene id kdf1b
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14460392 ~ 14470818 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACAGCAGTGTGAGGGAAGACATGGAGCTTCAGGAGACGGCTGGAGTCTAGACTGGTGGTGTGTCTGTGCTCAGCTCCAACGTGTGGCTTTGTTCACTCAGGACATTTCTGGATTAAGCATTAAATTGTAGGTCAAACGTTTGACGGGTGGGAAAAGCACACTGCACTTCCGGTCTGCGCcagctctccctctctctctctctctctctctctctctccgccACCCTGACGCTACAAAATCATGTCAGGCGATGGCAAAAGCTTCTCTCAGAGGTGGGAGAGGGCAGGAAGTCCTGAAGCATTGTCCATGCAGAGTAGTAGCACCAGGAGCCGGCCATATGAAGAGCGCTGTGTTGACCCAATCAGACCTGAGACCCAGTACCCTGGAGCGGTCCACAAAGTCCTTCAAAAAGATGCTAATGGCAATGCTACTGAGCCAGAGACCGTTAGCTTTCTGCCTGGCAAGACGGAGTCTCCATCTGCTTCCTGCTCGTGTGGTCCCTGTGTCTCAGTGAAAAGCTGTAGAACGTTTGCGTGTAGCGTGTTGACATGTGGACTGTATCGGGTGTGTAGGCGAATGCCATGTCTGCTGTCTGGGGAAACCCGAGGTGATGAGCCAGAAGTTCTAAAAGCTGTGACGTCAGTGCCAGATGAGAAGAATGATTTTTATCCCGATCTTTGTATTGGTGGTGTGAAAGTGGATCGATCAGCGCTAATGGAAGAGCACGAGCCAGTATCATTTAGCCTTCCTAAAATGGAGCTGGACAGCCTGACATATGAGAGTGGCAGCAAGCATTTCAGTAATTTACAAGATGAGGACTTTATTTATGAAGGCATAGATGAGGATGTGGACTCGCTAATCACACGTAAGCTACTTGAGGTTTTCTCTGAGTTTGAGATCAATGAGCTAGCAAAATGCACGTCGGACTCCATGTTCCTAAAGCGCTCCCAGGAGATCAGTCAGCTCATCTCGGATATTGTTCACGAGCATAACATTAAGGAGCAGGAAGCAGAATGCCGGCTAGTACGCGAGATCATCCGCATCAGCACACGAAAGAGCAAGAAGAAAGTGCCAGCGAGACAGCAGGAGCTGCAGAGAGACAGCGGCAATGACACCTGGAGGAGCAGTAAGAGGAGCAGCAAGAAGAACAGCTTCAATTCCATGAGTGATGGCAGTCTAAAGATTTCAGAGGAGAGATCTGATGACATAGAAGCGCGAAATCTGCGGAACAACAGTAAGCAGTcgtACTCGCCCAGCTTTCCTGCGTCTCAGTCACCGAGCTGCACAGACAATGTCACGCCCATCACATCAGACACTCCTTTGCTCTCTCATGGAATGAGAGCCtaaacctgcatttttttcctaaaagtgCTCTGTGTCGACCTCTGGGATTGTAATGAAGAACATGTGCTTACTCTCTTTATAGCCTAAAAGGTTTTGACTCATTTAACTGCCATCAGATTTGATGACATGACACAATTAACTTTTctatttatgataaaaaaaaattgcttgaaTTGTTGTCTAGTTATTGTTGACTTTGTTGTAGCCAGTAGATAGAAATGATGGTTAAACACTAGAggatatgaaataaaaagaataatcatTGTAAAATGAGGTAAAAATCAGCATTAGATTAGCattttgttgtaattttatTCATCAGAAGAACCACTGTTGCACTTTCCTAAATAGTGACTGAAGGACAGCtatcttcttctctttctcttagtTCTCTGTCAGCTGTTGATGCACAGGTGAAGCCTAAATAATAGTTTAGGGCCTGTGTGTCGTGTCCTTGTAGGCGGAAGGTTTTGTGCCAGAGAGGggttttaaaggaaaataactGGGACATAAATATGTCGGTTTTGGAGTCTGGATGGTTTTGTGAACTTCCCTTGTGTACTcaagaataaaatgtatttcctCAAATGTACAATTTAGTCTTTAGTCCTTCACTTAGTGTAGTCTCAGAGAAttattagggttttttttttttttgagtttaatCAGTAACAGTTCAAGCTAAATGTGAGTAATATTGAAGAGATTCTGAGATTCTCATGCTACTTTCATTTTCTGTGTTGCATAGCTgttttgtaaatgaaatgtaaattaaattcaaCAGGAAGACTAAGAGTAAAGCTGACCTTCAGATAAATTTGAGTGTTGAACATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481315 lncRNA downstream 74742 14378892 ~ 14385650 (-) True G405707
TU481288 lncRNA downstream 131192 14256524 ~ 14329200 (-) True G405681
TU481287 lncRNA downstream 131192 14304939 ~ 14329200 (-) False G405681
TU481309 lncRNA downstream 145558 14313739 ~ 14314834 (-) True G405701
XR_004577551.1 lncRNA downstream 268637 14183486 ~ 14191755 (-) True LOC117596429
TU481349 lncRNA upstream 4768 14475480 ~ 14478639 (-) False tpbga
TU481546 lncRNA upstream 147937 14618649 ~ 14686310 (-) True G405900
TU481548 lncRNA upstream 148626 14619338 ~ 14654751 (-) True G405901
TU481553 lncRNA upstream 174141 14644853 ~ 14966111 (-) True G405906
TU481557 lncRNA upstream 217311 14688023 ~ 14720906 (-) True G405909
XM_026928374.2 mRNA downstream 8021 14440800 ~ 14452371 (-) True nudc
XM_034301478.1 mRNA downstream 71926 14320865 ~ 14388466 (-) True arid1ab
XM_026928093.2 mRNA downstream 242222 14195955 ~ 14218170 (-) True tbc1d5
XM_026927974.2 mRNA upstream 4764 14475476 ~ 14479077 (-) True tpbga
XM_026927893.2 mRNA upstream 11225 14481937 ~ 14491263 (-) True tmem222b
XM_034301474.1 mRNA upstream 81332 14552044 ~ 14586242 (-) True epb41a
XM_026928370.2 mRNA upstream 127783 14598495 ~ 14614761 (-) True zbtb22b
XM_034301734.1 mRNA upstream 151969 14622681 ~ 14637333 (-) True ctdp1
TU481171 other downstream 340734 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 376546 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 698837 13759761 ~ 13761555 (-) True s100a11
TU480964 other downstream 698876 13759761 ~ 13761516 (-) False s100a11
TU480779 other downstream 901772 13556156 ~ 13558620 (-) False cks1b
trnat-ugu_14 other upstream 72505 14543217 ~ 14543289 (-) True trnat-ugu_14
trnat-ugu_15 other upstream 75394 14546106 ~ 14546178 (-) True trnat-ugu_15
TU481617 other upstream 496764 14967476 ~ 15013988 (-) True G405961

Expression Profile