RNA id: XM_026928604.2


Basic Information

Item Value
RNA id XM_026928604.2
length 1288
RNA type mRNA
GC content 0.45
exon number 7
gene id hax1
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13591039 ~ 13599620 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTAGGCCGCTGGATAGTCGGTTCCTCTACGTCGTCATCACCGCGATCACGTGACGTGACTTGCCGTATTGCATCTTATGGCTGTTCGATGACAGTTCACAAccttttaacaataaatgagTGTATTTGATCTTTTCCGCGGGTTTTTTGGGGTGCCAGGAGGCCGCTACCCTGGCGGTGACCGGAGGGATCCCTTCTTTGATGGGTTGacccatgatgatgatgatgatgatgatgaagtggaGGATAGATTTCATCACGATTCCATGGACAGGTTTGACGATGTGTTCAGATTTGGTTTCAGTTTTGGGCCAAATGGAATGCGCATTCAGGAGCCACAAATGTTTGGCCAAATATTCCGGGACATGGAGGACATATTTGCTGGTTTAGGCCACTTCGGTCGTGattTGCCCAGTATTGAGGCTCCACCTCAGGAGAAACCAGAGGACAGcaacaggagaggaggaagaagtAGGAACTCTCTCAGAGACTTCATGTTGAAGAACCCAGACGATTCTGCCTCTAATTCCCCTTCTGTAGCACCTAGAGACGTGGATCCTTCATCACCTGGTGGCCCAAGTGTACCCAGGAGCCCtttccatcacaggacaccattcTCCAGGtttaagGACATTTGGAGTGATGGACCAAGACAAAGGGAGGACgaaaaaaaagaggatggaGatctAGATTCTCAGGTGTCTTCAGGGGGACTGGACCAAATCTTAACGCCAGCTCCCTCACAGCCAAAAACACGATCCTTCTTTCAGTCTGTAACAGTTACCAAAGTGGTTAAGCCTGATGGGACAGTAGAAGAGAGACGTACAGTCAGGGATGGACAGGGTAATGAAGAGACTACCGTGATCCGCTCAGGAGGCCCTGGTGGTCAGGAAGGTCCACATGATGAGCCTGCTTCTCCCACACTAGGTGGTCCCGGGCCTTTCTCTGACATGCAGGATgagttctccatgttctccaagTTCTTTGGTGGCTTCAGAAGGTGAAAAGTGAGAAGACTAGAAGTGCTTCTGAGGATGAGACACAGGAATAAAGACACTGACCATTACACACTGCTTCAGCACTATTTATcctcattttgcttctttttttcagaactgcttactgacatttattaatcttttaaatactttaaagtcttttgatttggaatgtatataaacataaaaagtatataaatatactatacTTTATGAATGTTCTTGCAGGGGACATGCTGTTTACTGTCCTGAGAAGTTttacaaatgaatattaaagcaactaaaaatga

Function

GO: NA

KEGG:

id description
K16220 HAX1; HCLS1-associated protein X-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403560.2 lncRNA downstream 27090 13559889 ~ 13563949 (-) True LOC113535067
TU480772 lncRNA downstream 46634 13542003 ~ 13544405 (-) False rps27.1
TU480713 lncRNA downstream 136242 13452399 ~ 13454797 (-) True G405206
TU480641 lncRNA downstream 224263 13366437 ~ 13366776 (-) True G405144
TU480522 lncRNA downstream 372559 13218279 ~ 13218480 (-) True G405032
TU480893 lncRNA upstream 1407 13601027 ~ 13605892 (-) True G405353
TU480913 lncRNA upstream 55785 13655405 ~ 13706542 (-) True G405368
TU480934 lncRNA upstream 135916 13735536 ~ 13735748 (-) True G405386
TU480985 lncRNA upstream 208863 13808483 ~ 13814892 (-) True G405419
TU480986 lncRNA upstream 216278 13815898 ~ 13872428 (-) False G405420
XM_034301479.1 mRNA downstream 4489 13575684 ~ 13586550 (-) True aqp10b
XM_026928305.2 mRNA downstream 32408 13556158 ~ 13558631 (-) True cks1b
XM_034301730.1 mRNA downstream 41824 13548417 ~ 13549215 (-) True LOC113535306
XM_026928592.2 mRNA downstream 46534 13542035 ~ 13544505 (-) True rps27.1
XM_034301491.1 mRNA downstream 64939 13489949 ~ 13526100 (-) True chrna11
XM_034301811.1 mRNA upstream 3707 13603327 ~ 13638125 (-) False ubap2l
XM_034301812.1 mRNA upstream 3707 13603327 ~ 13637977 (-) False ubap2l
XM_034301810.1 mRNA upstream 3707 13603327 ~ 13637977 (-) True ubap2l
XM_034301814.1 mRNA upstream 3707 13603327 ~ 13637975 (-) False ubap2l
XM_034301813.1 mRNA upstream 3707 13603327 ~ 13636283 (-) False ubap2l
TU480779 other downstream 32419 13556156 ~ 13558620 (-) False cks1b
TU480639 other downstream 198304 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 449924 13140694 ~ 13141115 (-) True G404999
trnav-cac_26 other downstream 1011388 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 1012238 12578729 ~ 12578801 (-) True trnav-aac_26
TU480964 other upstream 160141 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 160141 13759761 ~ 13761555 (-) True s100a11
XR_004577571.1 other upstream 481752 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 514999 14114619 ~ 14119658 (-) True G405588
trnat-ugu_14 other upstream 943597 14543217 ~ 14543289 (-) True trnat-ugu_14

Expression Profile