RNA id: XM_026942085.2


Basic Information

Item Value
RNA id XM_026942085.2
length 6939
RNA type mRNA
GC content 0.53
exon number 17
gene id prrc2a
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6084909 ~ 6105333 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTGCGCTACAGCTTCAGTAGCCGTTGACGGCTCTTGTAGTTGACGGATCGATTACACttctataatattttattttccctttttcatttgttttgttggggaaaaaagaaaaaggagtaCAATCTCAGGGCTCACCATACTCAATGAGCGTGCAGCGCAATGTCAGAGCGCTCTGGGCAAACAGCAAAGGGGAAGGATGGCAAAACCAAGTATGCGTCTCTCAACCTGTTTGATACCTACAAAGGAAAGAGCCTTGAAGTACAGAAGCCTGTTGTTGCCCCTCGTCATGGCTTGCAGTCTCTTGGTAAAGTTGCCTCTGCACGGCGCATGCCCCCCCCAGCCAACCTGCCCAGTTTGAAGGCGGAGAACAAAGGCAACGACCCCAACGTCTCGCTCGTTCCCAAAGACGGCACAGGATGGGCAAGCAAGCCAGAATCAGCAGACCCAAAGAGTACCGATGTATCGTCAGCACCGCAGCCGGAGTCGCAGCAGCCTGCGGCTTCACAGATACCTGCTCCGAGCCTGCCGAGAACTCCTCCAGCTCAAGAGGCCCAAACTACAGCTATAGCCGCAGGGACAAGGTCCTGGGCTCAGGCCAGTGTTACACATGGAGTACAAGGAGATGGTGGAAAGGGATCAAACCAACCGTCGCCATTCTCTCGCGAGGAATTTCCCACCCTGCAGGCGGCGGGAGACCAGGACAAAGCTGGCAAAGAACAGGCCACTGCAGATCAGTGGTATGGGCCAGGACCAAGCCTCCGCCCCCAGAATGTGACGAGTTGGCGGGATGGTGGGGGCCGCGCACTGGCACCCACCATAGCTGGGGAGGGGGTAGCGGAGGGCGGTGTTGGGGGAGCCATGGGAATGGAGGGTGCAGCTGGGGCCCCTCTCCTTCAGAATCCCTCCCATGGGCCACCTAGAAACCCACCTGCAGGCAGCCCCACCCTTCCCCTCCCCCAGCCTCAGGTTGGCCCGCAGTTCCCTCCTTACAGAGGAATCATGCCTCCCTTTATGTACCCGCCGTACTTGCCCTTCCCAGCACCGTATGGTCCACAAGGGCCGTACAGGTATCCACCTCCCAGTGAGGCCCCTAGATTCTCTCGTCCGCAGGGTGGGCCTGCACCAGAGGGGAGGCCACCTGTTGGCCCCCGTGGTGAGGTGGTCAAACGCCCCTCTATCCTAAAGCAGGATGACCTCAAGGAGCTGGACGAGCTTGACCATGATGGAGATGAGGGATGGGCTGgGGCACAAGAGGAGATTGACTACTCAGCCAAGTTAAAGTTCAGCGATGATGAAGGTGAAGATGAGGGGgatgaagaggagactgaaagcAAGAATGGAATTCTGGAACAAAGGGAGCAGCAGAAATCCCAAGACGGACCTGCCCCAAGTTCACGTTCGCGGACGTCTGAGAGTGGAGGCAGCGCAAGGCACACACCTCCTGTCCCCACGGATGAGGTTACCCCAGCACCCTCCAGCAAGCCAAACTGGGCCGAGGAGGGGGGAAGCAGCTGGGGCGGTCAGACAAGCGCTGGACCCTACCAGGGGCGTAGGCCTGGACACGGTGGCCCTCGGGAGCAGCCCTCCCCCCCACCAGGTTCACTTCTTGGGCAGGGACCCTACTCCTACTACCGACAGCAGGAACGGGCCTCAAACCAGTCAGCACCCCAGAAGCCATCTGGTGCTCAGGTCCAGCAACAGAAGGGACCTACCCCTCCACCATCAAATGCCCTGCTTAACCAGACACAGggtgaggatgaagatgagacATGGCGTCAGCGGAGGAAGCAGTCGTCGTCAGAGATATCTGCGGCGGTGGAGCGTGCCCGGCGTCGCCGTGAGGAAGAGGAGCGCAGGATGGAAGAAGAGCGCCGTGCTGCATGTGCTGAAAAGTTGAAAAGGCTGGAtgagaaacagcagcagcaacaacaacaacagcagcaccaacaacaacaacagcaacagcagcagaagCCCAGTGCTGCCGTGGAAGTTCCTTCGAACAGCCCCACTCCTTCCCTGACGGCTTCAGCCTCTTCATCCAGCACCAGTCAGCCCCCGTCACCCTGCGTGGACACAGAGGAACCGCCTCTCGCATCCGCTCAGTTGGGTGGCGCTACACTGGCACTGACTGCTAATAACAGACAAAGAGCTGGCAGCAACAGCAGCTATGACTCTAACACTGAGTCGCAGCCGGCTGCTCAGCCTCCTGCCCCCCAGCAGCCCCATGATGTACCAGGACCAGTGGAAGTCAAGGAGGAGCCCGTGTCAAGCAGCACACACATTCGCAGCAGTAGAAGTGGAGATGAGACAGTGAAGGTAGAGGCAACTACAGGAGGAACAGGAAGGCCAGGGGGTGGAATGCCTGGTCAGGGCTTTTCCAAGTATCAGAAGTCCCTCCCACCTCGTTTCCAGAGGCAACAGCAGGAACAGCTCctgaaacagcagcagcagtggcagcagcagcagcacagccAGGTTGCACAAGCCCAACTCCAGTCCCAAACACCTCAGCAGGGCCCGACTCCTGGTGCCACACCACAGCCAGGCCCTAAACAGCCTGCTCTATACCCACCTGGCTCCATGGGACGCCCTCCGCCTCTCCCCATGAGCTTTGACCCTCGGTGGATGATGATGCCCTACATGGACCCTCGCATGATGCAGGGTCGCCCCCAACCTATGGATTACTATCCGGCCAGCATTCATCCCACTGgGCTGATGAGTCGGGAGCGCTCAGATTCTGGTGGCTCTGGCTCGGAGCAATTTGATAGGCAGCAGCATGGAGGTCCCCCTCATCCTCATCGTGGCACACCACCCATGGATCCTAAACTGGCTTGGGGACCAGAAGTTTTCCCAGGGAGCGGAGAGGGTCGGGCTCTGAGTTCCCCCTTGAGGCAGAAGCAAGctctggaggaggaggacatGGGTAAAGGTGCCAGGAGTGACACTCCTCCAGTGCGCACCCGAGAGGGAGGTACAGGTTCCATACAGCCACCTGTTGTGGGCACTAACTCTCCTTCTGGCTCCACTGATCAGGCGATATCCCCTGTGGGGACTCAAGCTGGCCATCACCAGCCCTTCTTGGGAGGGCGTGGAAATTACAGCAGCTTCCCAGATAATGGATCCAGGATGGTTTCTCATCCACAGCAGAGGGTTAATAGTGCTGGAGAACTTCGTGGCTTTGGCCACCAAGATGAAGCCCCACAGGGTGGCCAGCAGAATCAAATCTGGGGGGCTCCACATCCTCACTTTGACCGCAATGGCCGTGCTGATCTCACCCCCTTGGAAAACAACCCCCATTTGCAGCATCACCATGCTCATCCGCCACATTACACTCTCCATTCACACAAACAGGAGAATGgtagagaacgagagagaggaggagagccCAAGAAGACCGAAACCTCCCCTCCACTTCCCCAGCCATGCCTTTCTTCCTcctgctcttcttcttcctcttcctcttcaacTAGAGAGGATGGCAGCGGAAAGCAGTCACTACATCATCCCCCGACCCAGCATGAGCATGACACTGGACCCAGGGGTGTTGGACGGAAACAGGACAAAACAGGCAGCACCTACCTTCACACACAGTCCTCCCAGCATTCAGTGCAGCAGCACCACCCCAAATCTAACTCTCGTGGTCGGGAGCAAAAGACTGAAACTCAGTGGGGCCCAAGGCCTGGAAGTAGTAGTGCAAGTGGTGGACCTGCACATAACAGAAAGGGGGGCTCTGGAATGGGTGGAAACACAGGAGGGGAAGACTTGACCAGTCAGATTGATAAGCCTGCTGTCCAATCAGGAGGTGGTAACCCCAACAAGCGAGTGGGTCCTATTAAGCGACCTGTGCTGAAGGAAATGAAGAGGGAGGTTGGTGAAGGtgagggaggagagaaaaacaCCGCAGGCTCTGCAAAAGATAAAGACCATGATGCCAATCACGCATCAGTTAAGCAAGCATCAGTCTCCAGTTCTCAAGCCTCATCTGGACCTTCTGGTAAAGATGAAACTGCTCCTCCAGGAAAGCCAAGAAACGGTGGCAAGGAGCGAGGTGCTGGTGGGGGCATGAGTAAAGCATCCAAAGAAGGAGAAAACTCTGTCCAAGCCACTGGCTCTTTAGCTCCACCTTCCAGGAGGGACAGAGAGCATTCTTATGAGACAAGTGGCAGTGCAGGGGGTGCTACATACCATGCGGGCTCTTCCCGAGGAAGCCGAGCAAGCCGTGGAAGGGGTGAGTTCTATGGTCGAGGCAGAGGCTACAGGGGCAGTTATGCAGGCAGTGCACGTGGTAGGGCAGGGGGCAGAAGCAGCCGAGACTACAGATCCACTGCCAACAGTGGTTATCAGCATGGCGCCTCTAACCAAGATCATAAGAGGGAGGGGTCATCAGGCAGACATGGCCAGGGAGGCTCTCAGCCAAACCCTGGACGTGCCAGGAACCACAGCGAAACCCGAAGTGAGGGCTCAGAGTATGAAGAAGTGCCGAAAAGAAGAAGGCAAAGGGGTTCTGAAACGGGCAGTGAGAGTGCTGCTAGTGACCTTGCGCACTCTGACAAAGAGGATCGCAAGCCAACTGCCAAGAAAGGAGCAGGGGGAGAGAATTTAGGTGTGGGCAATGCCCCATCTTCAGCACCGCCAAGAAATACGCAAACCAGAGTGTTCACCCCTAGAGGAGTGCCATCTAGACGTGGCAGGGGTGGAGGTGCCACTGGAGGAGGTGTCTACAGAAATTCAGGCAGTGGAGGAGGTACGTCTGGCGGACACCGTCCTGGGCCTAGTTCTTCTCAAGGTGTGTCTGCTAAATCGTCTGCATCAGCCCGAAAGCAACACATACCCCCACAGCCCTCTCTAATAAAAGAACCAAGCCATGGATCTAatggggaaaagaaagagaaggctACTGAGCAGGGTCAGTCTCAGAACCAGGGTGTAAACTCTTCAGTAATCTCTGGTCCTATGGTGCCCACAACTACCCAGTTGGGCACTGAAAATGGAGGTGTGGCCCAGAGCTTAAACAACACCAATTCCAATTCCTCTGGACCCAAACCGATTCTTTTGCCTAATGCTGATGGACGAAACATTCTGCATAGAGGATTTGAGCGCCCTCCCCGTCGCAGACGCCATGGGCGTTCTCAACATCAGCAAGACAAGCCCCCTAGATTCCGCCGGCTTAAACAGGAGCGGGAGAATGCAGCCCGTATCAATGGAAGTAGCGGAATAATTGAAGCTGTGGGTGTGCAACAACAGCGGTCTGCTTCGCCATCCCAGAATTCAGTGCAAGATGGAACGCCTAATGTATCCTCTACCACTGGTGTTGCAAATACAAATCACAATGTCTCTGCAACCAACAGTAACAATAGCAGCTATCTCGGGGGTGGGAACCTGAATCTGAATagtcaccaccatcaccaccatcactacCATGGCAACTCTGGCCTGCCCCATTCTCAGCACCACCATAACCACAACCAGACTGGTGGTGCCAAATCTCCAGACGTCTCCAATCAGAACTCTGACCAGGCCAATGAGGAATGGGAAACTGCCTCTGAAAGCAGTGACTTTGCAGAGTTTCGAGAGAGGGAAGGtggcggaggaggaggaggaggaggtggaaaATCCTATTCCTCctatcaccatcaccatcctTCAGGAAGAGGAAGCGGAGGAGGGGGAGGTGTTGACCGAGAGATAACTACTAAAGAATCGGCCGCCAATAAGAGGAGCTTCTCCAGCCAGCGGCCTGGAATGGAAAGGCAGAATCGGAGGGTCAGTGCTGGTGGCAGTGGCGGTCGAGGTTCCAGAGGTCCACCTACCGGTGGCGGACCGGGTGGTGTATCGGGTAATGGAGGGGCCAATCGTGGTGAGAGGCGTGGCAATTGGCCATCTcccaagaacaggaagtgaattCCCCACCCCTTTCCCCGCCTTTTTAATTTAGCAACATTTCAAATTcatccctctttttctcttcccctCATTCATTTCTCAATTCGCATCCCCTAACATATtaccacattattattattattgttattattattattattattattattgtacaagATATAGTTATGAAGATGATGTACACACTCATTCTAGCACCCTTGGTTTAATGCTTTGTGTCTTGTCCCTTTTATTTGTCCATGCACACCTTTCCTTTCACACAAGCCCCAAGTTCTACTCAGATTAGGTGTCACATTACCTTAATTGACAACCCTTcagatataaaaatgtttgcatataCAAGCACAATATGACctcagactgacacacagataCTCAGCATGTGACTGCAGTGTGTAGGAGGCCTACATTAGTAGCATGGAGTAGTGTCTGGAAGTATTTATGAAAGGCCAATGTTTGTGATGTCCCTGTATATTTTTACAATGTTGGGGGTTTAGCAGTTCGGCATATTCTTCAGGTTGGAATTGGGGTTAGGTGTGCAGTTACTCTTTTAATATGAAGATATGTTCCTTAGATTtgctttttcctcctttttgtGTCGTCTTTCCTTTTACCTCATTGTTCAGTTTGTTTCATATTCCCTCCCTTAAAAAGTTAGGGCTGTAATGTTTCTTTTCCTCTGCAAAGCAggtcattaaaatgcattttttttaatcagcatcCTTCTTGATTTATTTCTCAGTTTTTCAGTTCATTGCTAATTTCTGCTTGCCCAACCTATGAAGTACTAATGTTCACATTTACTGTTTCTAATATCACTGCTGTAGCTCCTTGTTCAGAACTATATAGTGTGACTTTTTAATTCAAGGTTGTTGGATGATTGCTTCTCTgctattgccttttttttttttttttttttcttttttcagatttttttcccagcaGGTCATTTGGGTGTTTCAGCCTCTGCATAGAATATTAATTCTATTATTCGCAAACAGAGTTATTTACTGTTTTGTTCAGGAAAAACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476060 lncRNA downstream 63144 6021554 ~ 6021765 (-) True G401196
TU475958 lncRNA downstream 113735 5907147 ~ 5971174 (-) True G401106
TU475747 lncRNA downstream 272897 5811344 ~ 5812012 (-) True G400913
TU475654 lncRNA downstream 497528 5583555 ~ 5587381 (-) True G400826
TU475475 lncRNA downstream 703972 5371072 ~ 5380937 (-) True G400676
TU476142 lncRNA upstream 82640 6187973 ~ 6188409 (-) True G401243
TU476159 lncRNA upstream 142123 6247456 ~ 6250036 (-) True G401259
TU476302 lncRNA upstream 254421 6359754 ~ 6359977 (-) True G401388
TU476320 lncRNA upstream 299973 6405306 ~ 6405878 (-) True G401403
XR_003404449.2 lncRNA upstream 330198 6435531 ~ 6437074 (-) True LOC113543850
XM_026942101.2 mRNA downstream 2725 6075576 ~ 6082184 (-) False csnk2b
XM_034301528.1 mRNA downstream 2809 6075576 ~ 6082100 (-) True csnk2b
XM_026942333.2 mRNA downstream 238631 5813904 ~ 5846278 (-) True dtnbp1b
XM_026942332.2 mRNA downstream 249872 5813904 ~ 5835037 (-) False dtnbp1b
XM_026942331.2 mRNA downstream 249872 5813904 ~ 5835037 (-) False dtnbp1b
XM_026942263.2 mRNA upstream 3940 6109273 ~ 6114435 (-) True neu1
XM_026942262.2 mRNA upstream 12758 6118091 ~ 6124793 (-) True LOC113543800
XM_026942090.2 mRNA upstream 33200 6138533 ~ 6149189 (-) True prrt1
XM_026942254.2 mRNA upstream 45519 6150852 ~ 6171006 (-) False skiv2l
XM_034301529.1 mRNA upstream 45519 6150852 ~ 6170802 (-) False skiv2l
TU475643 other downstream 495162 5587398 ~ 5589747 (-) True G400815
XR_004577542.1 other downstream 1076448 4961102 ~ 5008461 (-) False sept7a
XR_003403516.2 other downstream 1951987 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 2723083 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 2723955 3360882 ~ 3360954 (-) True LOC113534841
TU476079 other upstream 67655 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 266317 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 330654 6435987 ~ 6436048 (-) True LOC113543912
TU476702 other upstream 1156007 7261340 ~ 7276644 (-) False fndc5b
TU477767 other upstream 3043178 9148511 ~ 9161470 (-) False G402673

Expression Profile