RNA id: XM_026942089.2


Basic Information

Item Value
RNA id XM_026942089.2
length 1849
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC113543691
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11525516 ~ 11529036 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGAGAAAGACGACAgggtgtggtgtgtttgtgctaACTGACGCCATGAAGGTGAGGAAGACAGGTGGCCATTTTACTTCCGCAAAGCAGCAAGAACTAACGTCTATCGTCATCCCTGGTTCATCTGTTGTGCATTCATCAAAGTAAGAGTGTGAGAAAATCCTGGGACTACAggtattttggagaaaaaaagacctGGACTACAAAGTTTCTCATACTTTTACTTTGCTGACTGCACAGCTAGATGAACTGGACAGGATGAAGTTcataaatattcctttaaacataaaaaacgAGTGTCACCAAGTTAAATGCGAATTAGCAGGGTCCTACACAGAAGGTGGTTGTGTGGATCTTGATAAAGCTGCCGGTGTTGTTAAAAGTTACTCTGGTGCACTGATTCCCCTCATAAAACCAAAGAGTtacagtgtgagagtgtgtgggcAGGATGGCACAGTCTACGCAGGGAATGAGGATCAGCTAGAAGCCTGGAAAGATTTCTACCTTCCAGAGAGAATGGAGATGGAGGTGATCGGTGCGATTGACGATTTCCCATGTGACGCGTTTGGCCTGCAGTTAGTCCTCTTGCTGTGTGAAGACGGGAACATATATGCTTATGAAGATGAAGTTCTGCACCTTGTAGCCAGAAGTGTACAGGAGCTGTTTGAAACTGGCTTGACCTTTCCCGGATTAGAATGCTACAAGCTAGGGGAATGTTTCGAGGATTGCACAGAGGAAGAATACAACGAAATCATGGAATCTGATGACATCAAGGAAATGAAAGAGGCACACAACAATTTCCGTGAATCTTTGGAGCGTGAACTACTGGAAAGTCTAAAGGAATCCAAAAGCAGTCAATTTAAGggTGTGGAAGAGGGCGTGATCCAGCCCAAGAAGAATTCAGACACAGTGAAAGAGTGTTGGGAGATTGTTGTTTGGAACCATATGCAAATACCTTCATACATAatgataaagtaaaataaagaaagtacagtaatatgtacagtactgtgcaaatgacCACCATTTTGTTTCGAGTCAAATGGCCATTAAGtacttattgttaattatttggtggcaaacaataatgatgggaaagtgtacattattttcattttaagtcAAACAGCCATGCAGTACTTATTTATGCAGGTCAATAATAAAGttcaatattacaaaaaatgcTTAAACATTTCATACTGTTTCTACTGTTAAAAACCTTTatgatttataaacaataaCCGTAATGAACAATGATGGGAAAAAGTGTTtaacagaaaaccacatcatTATTCTAACAATAAGTACTAAATGGCCATTTGATGCAAAATAAACGGTTGATctcagacttttgcacagtactgtatgtatatgtacagtgcattgcataagtattcacccccaccCTTggacttttctcctttttcacccCTGTTGTTGTAAAAACCCTAAATTAGTTGAATGGTGTTTGTTTAACGGTGTGCAATCAAAGTGTCATGTGATAAATATACCTGCTCCTGGAAGGTCCCAGAGTTTGATAGAGAACAATACCTCATCATGAaaaccaaggagctatcaaaacaagtcggGGACATAGTTCTGCAAatgtatcaatcagggtttggtgaTTTAACAAATATCCCAAAtagagcaccattaaatccattattaacaaattgaattatttaactatgaattatttaactatgttctctaacaaactctggggtcTTCCAGGAGCAGGTGTATTttttatactgagatcacatgacacttgcACACAAGTGTAACTATTCAGCTAATTATGTGACATCTGATGGCACCTGATTTAGGGATTTCACATCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479143 lncRNA downstream 129476 11395737 ~ 11396040 (-) True G403851
XR_004577563.1 lncRNA downstream 162560 11327698 ~ 11362956 (-) True LOC117596437
XR_004577564.1 lncRNA downstream 265125 11256791 ~ 11260391 (-) True LOC117596438
TU479108 lncRNA downstream 311678 11211886 ~ 11213838 (-) False G403823
TU479193 lncRNA upstream 2257 11531293 ~ 11533016 (-) True G403893
TU479300 lncRNA upstream 139727 11668763 ~ 11696191 (-) False G403981
TU479299 lncRNA upstream 142631 11671667 ~ 11688373 (-) True G403981
TU479303 lncRNA upstream 150219 11679255 ~ 11680996 (-) True G403982
TU479297 lncRNA upstream 162668 11691704 ~ 11696191 (-) False G403981
XM_026942158.2 mRNA downstream 2173 11517930 ~ 11523343 (-) True LOC113543737
XM_026942191.2 mRNA downstream 27257 11448455 ~ 11498259 (-) True LOC113543760
XM_026942193.2 mRNA downstream 27257 11451920 ~ 11498259 (-) False LOC113543760
XM_026942192.2 mRNA downstream 27368 11451920 ~ 11498148 (-) False LOC113543760
XM_026942197.2 mRNA downstream 44191 11451920 ~ 11481325 (-) False LOC113543760
XM_026942160.2 mRNA upstream 12408 11541444 ~ 11552179 (-) True si:ch73-109i22.2
XM_026942161.2 mRNA upstream 12408 11541444 ~ 11552175 (-) False si:ch73-109i22.2
XM_034301721.1 mRNA upstream 194541 11723577 ~ 11732473 (-) True LOC117596452
XM_026942200.2 mRNA upstream 248991 11778027 ~ 11790179 (-) True si:ch73-347e22.4
XM_034301565.1 mRNA upstream 248991 11778027 ~ 11789928 (-) False si:ch73-347e22.4
trnap-ugg_24 other downstream 83930 11441515 ~ 11441586 (-) True trnap-ugg_24
trnaa-ugc_19 other downstream 84781 11440664 ~ 11440735 (-) True trnaa-ugc_19
XR_003404459.1 other downstream 1020331 10505048 ~ 10505185 (-) True LOC113543918
XR_003404460.2 other downstream 1021191 10504188 ~ 10504325 (-) True LOC113543919
XR_003404458.1 other downstream 1021642 10503793 ~ 10503874 (-) True LOC113543917
TU479536 other upstream 248333 11777369 ~ 11779203 (-) False si:ch73-347e22.4
trnay-gua_12 other upstream 281347 11810383 ~ 11810470 (-) True trnay-gua_12
trnay-gua_13 other upstream 282841 11811877 ~ 11811964 (-) True trnay-gua_13
trnay-gua_14 other upstream 284332 11813368 ~ 11813455 (-) True trnay-gua_14
trnay-gua_15 other upstream 285849 11814885 ~ 11814972 (-) True trnay-gua_15

Expression Profile