RNA id: XM_026942116.2


Basic Information

Item Value
RNA id XM_026942116.2
length 1750
RNA type mRNA
GC content 0.51
exon number 14
gene id gtf2h4
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6360625 ~ 6370712 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTCACGTGACCATTCCAACATGGCTCTCTGCTCCACTCGTTCTGAAGCTGCACAATAGCAACATgtcaatatttcattatatggactctatttcattttttaagatAGATTAAATAAGTTGAGATAAACACTCAAAGATGAAGCTCCGAGTACAACTGCAGTGCAAGAACCTTCATGAATACCTGAAGGAACTGAGTCCAGACATCCTCGACAGACTGTACAACCATCCAGCCACATGTCTCGCCGTTTACAGAGAGCTCCCATCTCTGGCAAAGAATTATGTGATGCGAATGCTGTTCCTGGAGCACGCTCTCCCGCAGGCAGCCGTGGCATTGTGGGTCAAAAAAGACAGCCAAAAGGATCATGACCAGTGTGTGTCCGTGCTGACTGGACTGAGACTGTGGCACAGCCAGCAGCTGCAGGGAGGCCTTCAGGGCATCGTGCTCAACCCTGTGTTTAAGGATAACCTGAGGATTGCAGTGCTCGGAGGTGGTAAGCCATGGGCAGACGAGGGCAGCAGTCTCGGCCCTGATCGGCACGCGCGGGACGTAGAGAGCCTGGACCGCTACGCCATGGAGCGCTGGGAGGTCATCCTGCACTTCATGGTGGGCTCCCCGAGCGCCGCGGTCAGCCAGGACCTCGCTCAGCTCCTCATCCAGGCCGGCCTCATGAAGAGTGAGGCTGGTGAAGCGCCGTGCATCACTTCAGCTGGGTTTCAGTTTCTGCTACTCGACACCGCCTCTCAGCTGTGGTACTTCACCCTGCAGTACCTCAAAACAGTGCAGTCTAGAGGGATGGACCTCGTGGAGATTCTTTCCTTCCTGTTCCAGCTGAGTTTCTCCACCCTCGGCAGGGACTATTCTGTTGAGGGCATGAGTGAGTCTCTACTGACGTTTCTGCAGCACTTACGAGAGTTCGGCCTGGTTTTCCAGAGAAAGAGGAAGTCGAGGAGGTACTACCCCACTAGACTGGCCATAACTCTGGCTGCAGGAGTCACTGCCAacccttcatcctcctcctcttctgctGCTTTGACTGCTTCACCAGGAACAGGAGACTCTGGTTTCATTGTGGTAGAAACCAACTATCGTGTGTACGCTTACACAAACTCTGAGCTGCAGATCGCTCTGGTTGCTCTCTTCAGCGAGATGCTGTATCGGTTTCCTAACGTGGTTGTGGCACAGATCACCAGAGAGTCTGTACAGCAGGCTATTGCTAACGGCATCACAGCACAGCAGATCATCCACTTCATGAGGACCAGGGCACATCCTGTTATGCTCAAACAGACTCCGGTACTTCCTCCAACCAtcacagatcagatcagattgtGGGAACTTGAAAGAGATCGGCTGCAGTTTACAGAAGGCGTATTGTACAACCAGTTCTTGTCACAGGCTGATTTTGAGGTTCTGCGGGATAGAGCTCAGGGATTGGGAGTGCTAGTGTGGCAGAACCCACAGCACAGGGTCATGGTGGTGACGCCACATGGACACAGCGAGGTTAAGAGGTTCTGGAAGAGACAGAAGAGTCACACATAGGACGAACAGACGCCACAGGGGTGAGACGGTGCCATCATGGCAAGGGAGGCCTTATCTGAACTAAAATACTGCACATACACTGTATGCTTTTAACACATTTCCATTTTCCTTAAGGATACTGACAGAAAATGTATGGTTTGAACAGTTGGAGTGAAAGAATAagataatgtgaaatattttcacttgaatAAAAAGTTGTTGGTTCATTTA

Function

GO:

id name namespace
GO:0006289 nucleotide-excision repair biological_process
GO:0000439 transcription factor TFIIH core complex cellular_component

KEGG:

id description
K03144 TFIIH4, GTF2H4, TFB2; transcription initiation factor TFIIH subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476302 lncRNA downstream 648 6359754 ~ 6359977 (-) True G401388
TU476159 lncRNA downstream 110589 6247456 ~ 6250036 (-) True G401259
TU476142 lncRNA downstream 172216 6187973 ~ 6188409 (-) True G401243
TU476110 lncRNA downstream 173362 6096979 ~ 6187263 (-) True G401230
TU476060 lncRNA downstream 338860 6021554 ~ 6021765 (-) True G401196
TU476320 lncRNA upstream 34594 6405306 ~ 6405878 (-) True G401403
XR_003404449.2 lncRNA upstream 64819 6435531 ~ 6437074 (-) True LOC113543850
TU476306 lncRNA upstream 64828 6435540 ~ 6437028 (-) False LOC113543850
TU476428 lncRNA upstream 195325 6566037 ~ 6567293 (-) True G401482
XR_004577578.1 lncRNA upstream 208316 6579028 ~ 6581192 (-) True LOC117596453
XM_026942445.2 mRNA downstream 3199 6349885 ~ 6357426 (-) True sh3bp5lb
XM_026942212.2 mRNA downstream 23174 6227853 ~ 6337451 (-) False gabbr1b
XM_026942211.2 mRNA downstream 23174 6227853 ~ 6337451 (-) True gabbr1b
XM_026942293.2 mRNA downstream 151638 6189092 ~ 6208987 (-) True sacm1la
XM_026942386.2 mRNA downstream 176687 6175854 ~ 6183938 (-) False LOC113543872
XM_026942095.2 mRNA upstream 905 6371617 ~ 6374500 (-) True polr1h
XM_026942250.2 mRNA upstream 22257 6392969 ~ 6405009 (-) True mgat1b
XM_026942252.2 mRNA upstream 22257 6392969 ~ 6403928 (-) False mgat1b
XM_026942253.2 mRNA upstream 22257 6392969 ~ 6403924 (-) False mgat1b
XM_026942448.2 mRNA upstream 35394 6406106 ~ 6422826 (-) False vars2
TU476079 other downstream 185365 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 770878 5587398 ~ 5589747 (-) True G400815
XR_004577542.1 other downstream 1352164 4961102 ~ 5008461 (-) False sept7a
XR_003403516.2 other downstream 2227703 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 2998799 3361748 ~ 3361826 (-) True LOC113534843
TU476305 other upstream 938 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 65275 6435987 ~ 6436048 (-) True LOC113543912
TU476702 other upstream 890628 7261340 ~ 7276644 (-) False fndc5b
TU477767 other upstream 2777799 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 2856683 9227395 ~ 9251794 (-) False runx1t1

Expression Profile