RNA id: XM_026942124.2


Basic Information

Item Value
RNA id XM_026942124.2
length 3200
RNA type mRNA
GC content 0.47
exon number 3
gene id ube2ql1
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6598286 ~ 6610939 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCTCCTCCCAGCCTTCACATTTCGTACCCCACACTTGATTATTCATTCCGTCCAGGTACAAACGAGCAGTCGGGCAGCGCTGGTGCGTTTacgactgtatgtgtgtgtgtgtgtgtgggagagggagagagagagagcttgtcGGACTGGTTTACTGCAAGCGACATTACAGGGCTGCGTTAAGGGCTTAAGCTCGCTCAGAGCAGATCAGATCTGGATTAAGCAAGGGGAGATTGGATCTATTTCGAAGCGTAAGGCATCGAGATAATACGAGCAGGGCTCTGTGGGATGATGCACTGAAAGCGGGCTGCTCTCAGGCGCCCAGCggtcatcatcctcatcctcatcaccatcctcctcctcctcatcatcatctcctgcGCCTGCAGTGAGAACAGATCCTGGTGCATTGTGGTCACCATCACGTAACCATCGGGAGAGCTGCGGAATCCCcccctttcctttttctccccCCAGAAAGGACGGCGTGATGGCCACTCTTCTGAGAAAGATCGGTCTGATCCGCTTGCACGACCGAGACACAGAAGACCCCAAGCACCATCCGAAAGGGACTAAGCAAGGGAATCAGAAAAACAGCACCAAGCACTGTCACCAAAACGAGACGAACATCCTGAGCACCCCAGAAATCAAGGCCAAGCGCTCGGACGTCTCCGCCAAAGACAAAGCTCCTGCGAAGGACAAGCCGAGCAAGGAGACGAAGGAGAAGCAGCAGACGGGAAGCGCGAAGTCGAGCGCGAGCTCCGTGCCACCGCTGGCGCCCAACAGGCAGCACTGCGCGCAGGTGAGGACGCGGCGCCTCAtgaaggagctgcaggagaTCCGGCGCCTGGGAGACGACTTCATCACGGTGGAGCTCGCCGACGACAACCTGTACGACTGGAACGTCAAGCTGCACCAGGTGGACAAGGACTCGGCGCTGTGGCAGGACATGAAGGAGACCAACACCGAGTACATCCTGCTCAACATCTCCTTCCCCGACAATTTCCCGTTCTCGCCGCCGTTCGTGCGCGTGCTCACGCCGAGGCTGGAGAACGGCTACGTGCTGGACGGAGGAGCCATATGCATGGAGCTGCTGACGCCGCGCGGCTGGTCCAGCGCCTACACCGTGGAGGCCGTGATGAGGCAGTTCGCCGCCAGCCTCGTCAAAGGACAGGGCCGGATCTGCAGGAAAGCAGGAAAGTCCAAGAAGGCCTTCAGTCGCAAGGAAGCCGAAGCCACGTTCAAGAGCCTCGTGAAGACCCATGAGAAGTACGGCTGGGTTTCTCCTCCCGTTTCTGACGGCTGAGGAGCTTGCTGTCTCCACATcttcccctttccctctccaCGCAGCTTTCTCCAGTTTCTCACCTCCAAAcattcttttgtttaaaaaaaagaggtatCATCTCACACTGTATGTCGATGACTCTTCATTCGGTCGTCTGCCATTGTTCACTAAGGTGCCATGGACCACTCGCTCGCCGTGACATCACATTTCTAAACGATGAATGGATACTACTAACATGTTTGGCTAAAGGCAGTGAACGAAGCCCTGGGGAAAGTAATTGGGACAGACCCCAACCCTCACGCTGACTCTGTACCTCTCGATCACTCGATACCTCTCtgtgtttatcagtgtgttCATGTCAGTCCcttcctcctccatctcttcttcttcctcttcctcttattctctgttttctctttacTGTTTTAGAGATGATGACACATTGCACTGAACGCCATCagactttctttcatttacatGCATTGTAACGATATTTAATAGCAAGGCAGATGGGTGCAGTACATTTGAGGTTCAGTTTTGCCTGTTCTTCTTCAACTGTGCTATTTTTTTCATGGTTTCAATGCAACATGAAGATTGTAATTTATGTGgagctgtgctctctctctatctctctctttctctctctctcactctctctctctatgcgCGTGGCTAAATTTAGACATCACTGTGTTGCATAGCTGGTGATTGATTTCTCGTGgagatgattttaaaaaaacactcgTTGCTTATGCAGAGGTACTGTAAAGATTAAAGAGTGGTAGTGAGCCATTCTTGCGAATCATTATCATtagtattattacatttttttcttggaGAAGACCAAAAGCATTGAATTTCAATGATGTTGATACCAGATGGCAGAACTGAATGTCAGAGTCTCAGAGCATGAGTGTGCGTGTGGTGTGTACACAGTAGGAGCAGATTCACATCCATGATGCTTTTTAGAAATGTGCATGAGCCTTTTGCGATAAATTTAGTGGCCTCAGAGAAGCCAGAATCTGattagcatctttttttttttttttttggatttctcTGTGAGACGAAAAATACATTTGGAGACTGAATGTACCCGTCTCTGGTCCTGCTTACAATGAGACATGCCCCAGATCCAATGACTTCTTCCATTTCTCAGTGCACAGGCAGTGAAATGTCTAACAACTCAGGCCTCAGCTTCAATCACATTAAAATGCTCAGTCtgctttaactttttttttataactacaGACTGATAATAAAAGGCTAATTAAAATGGACTGAAAGGGATGGGTTGTTTGTTTAGCAGTGTGTATTAGTATTTATTGGCTGCCTCTCCAAATATCAGCATTAATCCTGAATGCAATGAGACATGATGTCTGTAAGCACCTTTAAGTACGCAATtcaaaggaaaactccacccttgcatattaatatttataattaacattgaTCTTCAATGGAAACCACAATATATTTTGaggttttgtgttgttttgttttgttttagtttagtttaaacatcAACCCTACCCTTTCGTCGACATGTTAGTcaattttcactttggttaaagAGTTCcttcattacccacaatgctgttcagcTACCTGCTAATAGTGGTGTCTTGGGGAATTATGGTGCATTCAATTTAActcggaagtgggaagtcggaACTCGGAATTGCGTCACTTTTTACCTCAGTGCATTCGAGCTACAAGGTGGGGAAAAGCTAACCAGCTAACATTAGCGATTTGAGGGATATATATTTACCTCCACAAAACAGCGAACTCTATAGTCaattttatagatttaacaactaatatgtctgtatgttgactgacctaaagcaaatacttgtatatactgtataactcgTTTAAAAACTCGTtcaaagaagtgctactttgtt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10582 UBE2Q; ubiquitin-conjugating enzyme E2 Q

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476437 lncRNA downstream 3346 6594708 ~ 6594940 (-) True G401491
TU476432 lncRNA downstream 11712 6585853 ~ 6586574 (-) True G401486
XR_004577578.1 lncRNA downstream 17094 6579028 ~ 6581192 (-) True LOC117596453
TU476428 lncRNA downstream 30993 6566037 ~ 6567293 (-) True G401482
XR_003404449.2 lncRNA downstream 161212 6435531 ~ 6437074 (-) True LOC113543850
TU476481 lncRNA upstream 131118 6742057 ~ 6742274 (-) True G401526
TU476488 lncRNA upstream 138054 6748993 ~ 6749232 (-) True G401531
TU476518 lncRNA upstream 158593 6769532 ~ 6769734 (-) True G401558
TU476559 lncRNA upstream 309691 6920630 ~ 6980575 (-) False G401577
TU476554 lncRNA upstream 329588 6940527 ~ 6980575 (-) True G401577
XM_026942444.2 mRNA downstream 34654 6555953 ~ 6563632 (-) True srd5a1
XM_034301573.1 mRNA downstream 43295 6538616 ~ 6554991 (-) False tent4a
XM_026942343.2 mRNA upstream 68370 6679309 ~ 6683495 (-) True irx1b
XM_026942327.2 mRNA upstream 131783 6742722 ~ 6745462 (-) True ndufs6
XM_026942374.2 mRNA upstream 165040 6775979 ~ 6780923 (-) True nrsn1l
XM_026942102.2 mRNA upstream 368120 6979059 ~ 6980290 (-) True sox4a
XM_026942389.2 mRNA upstream 587422 7198361 ~ 7205064 (-) True e2f3
XR_003404453.2 other downstream 162238 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 223796 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 423026 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 1008539 5587398 ~ 5589747 (-) True G400815
XR_004577542.1 other downstream 1589825 4961102 ~ 5008461 (-) False sept7a
TU476702 other upstream 650401 7261340 ~ 7276644 (-) False fndc5b
TU477767 other upstream 2537572 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 2616456 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 2765987 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 2776063 9387002 ~ 9416207 (-) False triqk

Expression Profile