RNA id: XM_026942150.2


Basic Information

Item Value
RNA id XM_026942150.2
length 1763
RNA type mRNA
GC content 0.47
exon number 9
gene id si:dkey-81h8.1
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4694466 ~ 4706433 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGCTTTATCCAGCTGAATAACCGGAGCTCTGATTGACGCACACTGTTCTTCACTCTCCTATACACCATACAGTAGTGTTATTAAGGTCTTTATGAAGTTTTGCATGCCTGTGTGGCTGTACATGTGACTGCTGGAtaccagagctgctgttgtgcAGGGGACAGGATCCTGAGTGCGggttgtcctctctctctctctctctctctctctctctctctctctctctcctgcatcATCCTGCACCAGCTTTCTGCAGgccCTGAAAGTGCCGCTCTGAGATTTTTTGCATAATAACCAGTAACAGCATGGGGATTGAGAGTCAAGCCCCGGCCCAGCCTGCAGTCAACCTGACCCCCAGACAGGTGAAGACTTTCCAGAAGGTGGAACCAAAAGCTTTAGGGTCGATCCAGATCGTCATCGCTGTTTTGTGTCTGTGCCTGAGTGTCTCCGTGCTTCAGATCTACTACGAAGTTCACTTCACCCCCGACCTCATCGTAGTGGTCGTGATCGTCGTGCAGATTCTTGCCTCCGGTTCAATCCTGATCCATGCTGGGAGGTTCCCTTCTCTTTTCTGGgtaaaGGCAACTCTGGCCATTCATCTTGTGAGTGCTGCATTCACCACAGCCGCTCTGGGCCTCCTGTCTCGCCACCTTCCCTACAGACAGGACTCGTATCACTGCGAGCACTGCAGGAGACTGGAGATCTATGCTgtgCAACAACATTGTTTCAAGAAATGCACTTATACGATCGAAAGAACCTGTAAACTCTTGATTGACGGCTTGTTGGCTACGTTGGTGCTGTTCCTGGTGGTGGAACTGATCGTCTGCATCGTCACCATTTTGTTTGGACTCAGCGTTCTGGCTAAAGGAGGCCTGCATCTGCCTGGTGTGGTTCAGCGTATTGAACGTCCTCCAGCACGTCCAGCTCCACCTCAGCCAGAGATCGCACCTCCTCAGgtggaggtggtggaggaggtgaTGGTCCCCGAGGCTGCACGTGAACCTTTTCCTCAGCCGGTAGAGGAAGCTTCTACTCCTCCCACTGAACCTCAGGTCGAGCCCATTGACTCTATAGCGGAGGTCTGAGCCAGGGTCATGTGACCACTTTCCCACCGCAAATAGGAGCTTTATTCATTCAGATGGTTTCTCCGAGCAGAAAGTATCGTGATTGGTTTAGTTCGGCGGCTAGTCAGTTTCTGCTCTCAGAACATATTTCAATAACTAAAACTCCTATATGCTTTTCCACCAATCAGAGACGAGAGCAAATATCCgaggccaaaaatgaaatgtatacaatttacattagcctcatagctctgTTTTTAGCCAAACTGATCATTATGAAAGTCATGTTAAGTGAATAATGATATTAGAGCCAGTTTTCCCCAAAGCATCTAGACTTTTTGAAGACATTATATagagtttataccacagtgctgtttaattctcgaaactgattggtcagaaggtgctgattaattttctgtgacAGCAGTTCAGACAGTAGTTCCCACTGCAAGGTAAATCGCAAGTTTATATCAATTCACTTCTTccaaaatgttattgtttctatagtaacaactatttatggaaggagtctccagtgttagcccTTTGTAAAGCAGCAACATTATGTTTTACCAATTTCTCggtaatgtgacaagctgcatttcctgtcttattaacttcaggagagtgaaaaaagctggtgagggaactgtttgtagctgcttaagtggtaacaggaactaactcgtttctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475178 lncRNA downstream 59409 4597800 ~ 4635057 (-) False polr3gla
TU475179 lncRNA downstream 63183 4597800 ~ 4631283 (-) False polr3gla
TU475168 lncRNA downstream 131102 4562211 ~ 4563364 (-) True G400432
TU475167 lncRNA downstream 132446 4558488 ~ 4562020 (-) True G400431
TU475162 lncRNA downstream 160335 4533841 ~ 4534131 (-) True G400428
TU475232 lncRNA upstream 73178 4779611 ~ 4785657 (-) False G400477
TU475233 lncRNA upstream 75508 4781941 ~ 4785657 (-) True G400477
XR_004577584.1 lncRNA upstream 106228 4812661 ~ 4817295 (-) True LOC113543895
XR_003404450.2 lncRNA upstream 107011 4813444 ~ 4817295 (-) False LOC113543895
TU475255 lncRNA upstream 127321 4833754 ~ 4833983 (-) True G400494
XM_034301462.1 mRNA downstream 3097 4667787 ~ 4691369 (-) True si:dkeyp-92c9.4
XM_034301691.1 mRNA downstream 91666 4598422 ~ 4602800 (-) True polr3gla
XM_034301692.1 mRNA downstream 91676 4598422 ~ 4602790 (-) False polr3gla
XM_026942301.2 mRNA downstream 141100 4534996 ~ 4553366 (-) True mtx1b
XM_026942284.2 mRNA downstream 169059 4507481 ~ 4525407 (-) True thbs3b
XM_034301661.1 mRNA upstream 3305 4709738 ~ 4747838 (-) False sema4ab
XM_034301662.1 mRNA upstream 3305 4709738 ~ 4747838 (-) True sema4ab
XM_034301664.1 mRNA upstream 3305 4709738 ~ 4745653 (-) False sema4ab
XM_026942294.2 mRNA upstream 130417 4836850 ~ 4839788 (-) True pex11b
XM_026942249.2 mRNA upstream 134470 4840903 ~ 4850568 (-) True rit1
XR_003403516.2 other downstream 561544 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 1332640 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 1333512 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 1383034 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473969 other downstream 1418511 3273840 ~ 3275955 (-) False G399489
XR_004577542.1 other upstream 254669 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 880965 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 1466555 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 1665217 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 1729554 6435987 ~ 6436048 (-) True LOC113543912

Expression Profile