RNA id: XM_026942158.2


Basic Information

Item Value
RNA id XM_026942158.2
length 2049
RNA type mRNA
GC content 0.39
exon number 5
gene id LOC113543737
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11517930 ~ 11523343 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATAagacactattaaaaaaaagaaggacaAATGTAGTAACAATAATGGCAAAGTATTAGTAATGCTGATAGTTACAACAATAAGCAGTTCTTTAGTAGGTGTATAAGGAAATGAAACACTTCCTGGAAAACGAAACATGAAGGTGAGTAAAGGTATGGAGTATCATGGGTGTGGTGCACGTAGTGAACTATCGTCGGACTGCTCAAACACGGAGATCATTGCTTTAGAAGGTTTTCTTGAGTTTGTTGTTGAATCATGGAAACTGGAGCTATCAGTGTTTCGAACACGCAAAACAAAGCTTTCAAAAAGAGGAAACCCCGTCCAAATTTCTTGAAAAGTCAAGAAAGTAATAAGGAAAGCTTAATATCATGCAGTTACTCATTAATCTACCACACACTGTTGATGACaatagagaatgaaaaaaagggaaatgacAAACTCTGTGTTTACATGGATGAGATGCTTCATAGCATTTTCTTCCTTGGGTACATTTATGACTCACCCCGCTTGACTCCCAGTGATTTCTTCAGAAGTCCTGAAACACGTGAACAGGTGATGAAAAAGTTTCCCCGGCCATTTGAGAAGTACAGAAGTCATCTGCCAACTCGCACTCCCTTTTCCATTCTGCTAAACATGATGGAGACACTTTATTGCActgaagagaaaataatagaagAGCTTCTGCGTCTGCTGAAGAAACTTGGATTCCCAAACCCTCTTCACAAACCAGGCAGCAAATACGAGCAATATTACACACTGGAGTCAACAGTAATCTGTGTGTGCTATTCAGATTCTGATTCACAGAGGTATTACGGGGCGTCTCTTTCCTGCAGAAAAGGAAATGCAAAGAGAATTCTGATCGACCTGTCTTGTCTTAAAACATGGCACGAGTTTGTATCTCATGCAGTCATGTCATTTTATCCAGGACCTTCTGGTGATGGTATAACATTCCCTGAGTCACTGAAATGTCAGGCATACATTAGAGACTGGAACAAAAATGTTTATAGTAAAAGACGTCCATGTTTAAACTGTAAACAGCTGTTTAATCTAAAAGACGCAGATCCAGATAAAGTGTATCATCCCTATGGGAACTGTGCTGAGACAGAGTGCTTGAGCAAACTGCTCTTCAATAATCAATATATACGGGAGAACACACGGATGGAAAATCATACAGAGACAAACTTAGAGACACTTCGAGGTTTAACAAAAGAACGCTTGACAATGCAGCTTGACCAAGTTGGCATTCAAATGAATAATGAGAACTTTCTCTTCTACATCCCAACGCAAATGAAGTATAATGAAGAATGAAATTTGTGTTTATCTTAAAGAACAGTTtataatatatgcatatatagaGTGTTGCTTAAGGTAAACATATATGCAttatgctcacacacacacacaggaacacctgtacacttgctcattcatgcagttatccattTAGCCAATGCTCAAGAGCTGAAGAttgaaaaagaccaggtaatGCAAATTTTCACTGAGCCTATatccactgcagcctcagattcatgttcttggctgacaggactggaacctgatgtggtcttttgccGTTGCAGCCCATCTGactgttgtgcattctgagatgcttttctgttcaccacggttgtaaagagtgattatttgagatATCACTCGCAGCCTTCCTGTCATCTCAAACCACTCTGGCTGTTCTCCTTCAACCTCTCTTatgaacaaggtgtttccacctaGAGAACTGTCACTAACtggatgttttatgtttttcacacaattctgtgtaaactctaaaggctgttgtgtgtaaaaatctgcagtaggagattagcagtttctaaaaaataaaaaataaaatcagcccATGTTCCAGAGTCACTTAGATCATAATTTTATTccagtctgatgtttgatgtgaacattaactgaagctcttgacctgtatctgcacgatTTTATGTATTTCGCTGCTGAcagatgattggctgattggacaactgactgagcaggtgtttctattaaaatgaccagtgagtgtatataaaaattat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479143 lncRNA downstream 121890 11395737 ~ 11396040 (-) True G403851
XR_004577563.1 lncRNA downstream 154974 11327698 ~ 11362956 (-) True LOC117596437
XR_004577564.1 lncRNA downstream 257539 11256791 ~ 11260391 (-) True LOC117596438
TU479108 lncRNA downstream 304092 11211886 ~ 11213838 (-) False G403823
TU479193 lncRNA upstream 7950 11531293 ~ 11533016 (-) True G403893
TU479300 lncRNA upstream 145420 11668763 ~ 11696191 (-) False G403981
TU479299 lncRNA upstream 148324 11671667 ~ 11688373 (-) True G403981
TU479303 lncRNA upstream 155912 11679255 ~ 11680996 (-) True G403982
TU479297 lncRNA upstream 168361 11691704 ~ 11696191 (-) False G403981
XM_026942191.2 mRNA downstream 19671 11448455 ~ 11498259 (-) True LOC113543760
XM_026942193.2 mRNA downstream 19671 11451920 ~ 11498259 (-) False LOC113543760
XM_026942192.2 mRNA downstream 19782 11451920 ~ 11498148 (-) False LOC113543760
XM_026942197.2 mRNA downstream 36605 11451920 ~ 11481325 (-) False LOC113543760
XM_026942195.2 mRNA downstream 52452 11451920 ~ 11465478 (-) False LOC113543760
XM_026942089.2 mRNA upstream 2173 11525516 ~ 11529036 (-) True LOC113543691
XM_026942160.2 mRNA upstream 18101 11541444 ~ 11552179 (-) True si:ch73-109i22.2
XM_026942161.2 mRNA upstream 18101 11541444 ~ 11552175 (-) False si:ch73-109i22.2
XM_034301721.1 mRNA upstream 200234 11723577 ~ 11732473 (-) True LOC117596452
XM_026942200.2 mRNA upstream 254684 11778027 ~ 11790179 (-) True si:ch73-347e22.4
trnap-ugg_24 other downstream 76344 11441515 ~ 11441586 (-) True trnap-ugg_24
trnaa-ugc_19 other downstream 77195 11440664 ~ 11440735 (-) True trnaa-ugc_19
XR_003404459.1 other downstream 1012745 10505048 ~ 10505185 (-) True LOC113543918
XR_003404460.2 other downstream 1013605 10504188 ~ 10504325 (-) True LOC113543919
XR_003404458.1 other downstream 1014056 10503793 ~ 10503874 (-) True LOC113543917
TU479536 other upstream 254026 11777369 ~ 11779203 (-) False si:ch73-347e22.4
trnay-gua_12 other upstream 287040 11810383 ~ 11810470 (-) True trnay-gua_12
trnay-gua_13 other upstream 288534 11811877 ~ 11811964 (-) True trnay-gua_13
trnay-gua_14 other upstream 290025 11813368 ~ 11813455 (-) True trnay-gua_14
trnay-gua_15 other upstream 291542 11814885 ~ 11814972 (-) True trnay-gua_15

Expression Profile