RNA id: XM_026942160.2


Basic Information

Item Value
RNA id XM_026942160.2
length 1957
RNA type mRNA
GC content 0.51
exon number 9
gene id si:ch73-109i22.2
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11541444 ~ 11552179 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTACAGCACAGGttgtttccttctctctctctctctcgctctctctctctctctctctctctctcgcactctctctctctctcatcccacACCCACACGATCTCAGTGAAGCCAAACCACTTATGAATAGTTGACGAGTTGACAATACTCCAGCATCCTGTCTCTGAAGATGGACTTTGACTATCAAAAAATTAAAGACGATGAATCTCGTCAGAGGGAGGAGCGAATCAGCTCTCTCCCAGTCCTACAGCCAAGACCCATGCATCGGCAATCTACTGCTACAGAAGCTCCATCCAATATCCAGAAGCCTCCAATCAAACCCAGACGCAGCATCAAATGCCGTCCCATCACACAGCCAGGATCAGGACAATCAGACAGCCAGCCCAATCAGATGGAGAATGAAgaaCGGAAGCGAATCGCTCCATCTCAGGTGCTGAACCCTACAGGGCCCCTGGATGCTCAGACTCCATCTCTGAAGGCTCATAATCTGCTGTGGTTTCAGAGAACGCAGCTGCCTCGGCTGCCAAAACCCGTACCGTATTGGCTCCATGGCTTTGCCACACGCAGgGAAGCAGAGCAGCTACTGCAGGATAAGCAGCAGGGCTGTTTCCTGGTGAGGCTCAGTGAGTCAAAGGTTGGCTTTGTGCTCTCTTATAGAGGTGCAGACAAGTTCCGTCACTTCATCATAGAGGACGAATGTGACACGCCTGGGACGATAGGTCACTACGTCATAGCTGGGGAGGAAAGCAGGCATTACAGTCTTGAGGGCCTGATAAACTACTATACCCACAATCCAGTGGGGCCTTTTAAAGAAACACTCACTGTGCCTTGCATGCAGCCTAATGGCATCTCTGAGGATGGAGCAAAGCTGGAAGGGAGAAACGAAGAAAGAGGTGAAGAAAGAGTAGCCACTCCACCAAGTAGCAGAGAATGCCCTCCCACAGACTCCACAGGACATGATGTCCATGCTGCCCCGGAGTCAGCACAGTACGCTGTGGTGAGGAAAGCACTGAGGAAGTCTCACTCTCTATCCGAGTGCATGACTGGATCTGACTTGCTGCCGCTTGTCCAAGAAAATACAGACAGAGGAACGAAAACAGAGGACAACACACTAGAGCCTGTGTTTGACAACACAGACATGTGTGTAGGAGGAGACGTGGCCCACCCTGTGGATGCCCCCTACGCGCGCGTCAACAAACCCCTTCGGCCAGCACGACTTTCCTCCATCGACGACACCGATGCCAGCGTATGGGGTGCATCAGCAGCCACCGATTCTCAGTCTTTCCCCAATGTTGCAGCCGTAGCAGAACAGAAATACTGGGAACTGGAGCCTATGCATACTTACGAGGAGGCTCTGCACACACGTGCTGGTGATGATCAGATTGATTTCTACGCAGTTGGGAGGCACAGAGAAAATGCAAGGGATGCAGCAGATCTCCATACCAATCATGTCTACTCAGAGATCAACATTAAAGGGACCAGAGATGATCCCATATCAGCTTCTCCGCCACTCCGGGCGGACACAACATTTAGCTCTACCCCGTCCTCCACAAGACCTAGACTGCCCCCAAGATTTGCCTCTAGACCTGCACATGCTCCAGTACGACCTGAGAGTAGTACTCAGAATTTTGGTGTTTCAGCGGTGAGGAATTCGCCCCCTTACCAATCTGAGCAGCCGCTGGCAGAAAACTCTGAGTTCTCCATATATGAGCAGATTCCAGAAAGACTGAACAAATCCAGACCTCCATTGCCGCCTCCACAACGCTGACTCCAGGTCATCTCCCTTTGACGTCTAACCCTTTCTACTAGCAAATACATCTGTTTTACACTGAATGAGATAGCTACTCACAGAAAATGGTAACTACTGAAACCAAAAGCATACAGCAGTCATTCCACTTGATGTATATGGTGCTGTACATAGCAATGCTTAACCTTATCCCGCACAAGTACCACttca

Function

GO: NA

KEGG:

id description
K08273 SH2D2A, VRAP; SH2 domain-containing protein 2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479193 lncRNA downstream 8428 11531293 ~ 11533016 (-) True G403893
TU479143 lncRNA downstream 145404 11395737 ~ 11396040 (-) True G403851
XR_004577563.1 lncRNA downstream 178488 11327698 ~ 11362956 (-) True LOC117596437
XR_004577564.1 lncRNA downstream 281053 11256791 ~ 11260391 (-) True LOC117596438
TU479108 lncRNA downstream 327606 11211886 ~ 11213838 (-) False G403823
TU479300 lncRNA upstream 116584 11668763 ~ 11696191 (-) False G403981
TU479299 lncRNA upstream 119488 11671667 ~ 11688373 (-) True G403981
TU479303 lncRNA upstream 127076 11679255 ~ 11680996 (-) True G403982
TU479297 lncRNA upstream 139525 11691704 ~ 11696191 (-) False G403981
TU479385 lncRNA upstream 210932 11763111 ~ 11765767 (-) True G404060
XM_026942089.2 mRNA downstream 12408 11525516 ~ 11529036 (-) True LOC113543691
XM_026942158.2 mRNA downstream 18101 11517930 ~ 11523343 (-) True LOC113543737
XM_026942193.2 mRNA downstream 43185 11451920 ~ 11498259 (-) False LOC113543760
XM_034301721.1 mRNA upstream 171398 11723577 ~ 11732473 (-) True LOC117596452
XM_026942200.2 mRNA upstream 225848 11778027 ~ 11790179 (-) True si:ch73-347e22.4
XM_034301565.1 mRNA upstream 225848 11778027 ~ 11789928 (-) False si:ch73-347e22.4
XM_026942199.2 mRNA upstream 225848 11778027 ~ 11789928 (-) False si:ch73-347e22.4
XM_026942107.2 mRNA upstream 240041 11792220 ~ 11794417 (-) True apoea
trnap-ugg_24 other downstream 99858 11441515 ~ 11441586 (-) True trnap-ugg_24
trnaa-ugc_19 other downstream 100709 11440664 ~ 11440735 (-) True trnaa-ugc_19
XR_003404459.1 other downstream 1036259 10505048 ~ 10505185 (-) True LOC113543918
XR_003404460.2 other downstream 1037119 10504188 ~ 10504325 (-) True LOC113543919
XR_003404458.1 other downstream 1037570 10503793 ~ 10503874 (-) True LOC113543917
TU479536 other upstream 225190 11777369 ~ 11779203 (-) False si:ch73-347e22.4
trnay-gua_12 other upstream 258204 11810383 ~ 11810470 (-) True trnay-gua_12
trnay-gua_13 other upstream 259698 11811877 ~ 11811964 (-) True trnay-gua_13
trnay-gua_14 other upstream 261189 11813368 ~ 11813455 (-) True trnay-gua_14
trnay-gua_15 other upstream 262706 11814885 ~ 11814972 (-) True trnay-gua_15

Expression Profile