RNA id: XM_026942181.2


Basic Information

Item Value
RNA id XM_026942181.2
length 3551
RNA type mRNA
GC content 0.48
exon number 18
gene id spire1a
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 9627293 ~ 9669455 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cactcactcacacacacacacacacacccggagcgcTGGAGCTGCAGAGCTgaatggaaagtgtgtgtgagcagtgtggcTGTATGGAGTGGAAGAAGGATGCTTCAGCTCTTTAAAGGACTCtatctcttatttatttaatccttACTTTTTGTAATAAACAACAAGAAGACCGCagcaatacaataataataataataacaacaacaataataataacaataatggcCAAGCCGCGTGGGAATGGAGACGGTGCGGTGAGGTTCATCTCACCCGCGGCTCTCAGTGACGGAGACAGCGACGTGGACTCGGGGGAAGAAGACCTGAGCCTGGAGGAGATTTTAACCCTTTACGCTCAGCCCATAAATGAAGAACAAGCATGGGCAGTGTGTTATCAGTGTTGCCAGTTTCTGAGCCAGTTAAAACGCAGGATGCGGAATTCCCAATCCCAGTCCCAATCCCAGCCCCAGTCCCAGTCCAGTGTGGATGTAGCCAGGAAGATTGAAGGACCAGGAGATGTGCGGATCTGTAAAGACGGGACTATTAAAGTCCAGCCCAGAAACAGCTCAGataaacacacacagcataattCCTCCACAGAGGTGATCGAGTCTCTGGGGATTATGATTTATAAAGCTCTGGACTATGGGCTGAAGGAGAACGAAGAGCGGGAGCTCAGTCCTCCCCTCGAGCAGCTAATCGACCTCATGACCAACATGGCGGATACGGAGGTAGATGCCTGCCCCGACGAGGGCTACGAAGCCACCGAGGAGGAAGACGAGGGAGAAGAAGAGCAGACGGAAGTCTCGGGTATACGAGGCTACCGAGACATCATCACGctGTGCACATCCCACCTCCCGAGTTCATCAGACGCTCCCAACCACTACCAGGCCGTGTGCCGTGCACTGTTCGCTGAGACCAAGGAACTCCGGACCTTCCTGGAAAAGATCAAGAATGCCAAAGAGaatTTGCGGCGCATGGAGGGAGAAACTCTCGAGGAACCTGTCAGAGACCTGAACGAGCTGCAGAATGACGATTGGGCTCGGTTCTGGGTGCAGGTAATGAGGGACCTGAGAAACGGTGTGAAACTGAAGAAGGTGCAAGAGCGACAATACAACCCACTGCCCATCGAGTACCAACTCACTCCCTACGAAATGCTCATGGATGACATCCGCTCAAAGCGCTACAAGCTCCGCAAAGTcatggTGAATGGGGACATTCCTCCAAGGTTAAAGAAGAGCGCTCATGAGGTCATACTGGAGTTTATACGTTCCAGACCTCCTCTGAACCCAGTCGCTGCCCGTAAACTGAAGCCTCATCCTCCAAGACCCCCGAGCCTCCACGAGCGAATCCTGGAGGAGATCAAAGCCGAGAGGAAGCTGAGGCCTGTTTCTCCTGATATGATCCGCAGGAACCGGCTCGGCGCAGGAAAAAGCATCAGCACTCCCCAGGACTTGTTCCGATGCTCAGACACACCGGGTACACCCAGGAAGAAGATTGCGGTCAGCACACTGGCATTGGCCGATGACACGCCACCTTCTCCCAAACCTGCCAATGGAGCACAGCCACTCTCACAAAGGAAGAAATTGCTCAAGGCACCAACACTGGCCGAGCTAGCAAGCTCTGACtctgaaGAGGAGTCTAGCACACACAAATCAATCAGCAGCTCCAGCATATCCACTTCTATGGTGGACGACACGTCTCCAGATTCTGTCATGGGCAAAAAGACCCCTCCCCGGTTCCTCCCAATATCGTCCACACCTCAGCCTGAGCGCCACGTGGCTCCTCAGCGGAGGCACTCCATTGAGAAGGAGACCCCGACCAGCGTTCGTTCATTCATACCTCCTTCTCGCCAGAGCTCCAGATCTCTGCCACCACAGGAAAAGAAGgaggaATTTTGCTACCCTATGGAGTGTCGGACCCTGACTGTAGAGGAAGTGATGCACATCAGACAGGTTCTGGTCAAAGCTGAGCTTGAGAAGTTTCAGCAGTACAAAGAGGTTTACAATGCTCTGAAGAAAGGAAAGCTTTGTTTTTCCTGTCGGACGAAGaagttttcctttttcatttggTCCTACACCTGTCAGTTCTGCAAAAAActtgtgtgttcacagtgttgTAAGAAGATGAAGCTGCCCTCCAAGCCTTATGCCATCCTGCCCATTTACTCTCTCGGATCCAATACCCTGCCTAGGAAGGAAGCTGGAGTCACAGCCCAAGTGGAGAAGTCCTCATCCAACCAGCGCAACAGCTTAAAACCTTCCACATCCAGACCTTCCAAGCTTGGGGAGTACACCACCTCTAGAGATGAAGTGGAGCTGCCAAAGGAGCTGACGGAGGACTGGAGCACCATGGATGTGTGCGTGGACTGCAAGAAGTTCATCAACGACATCATCTGCTCCAGCAAACGCAGCTTATCCGTGGCTAGCACACGATCCTGTCTGAAGCGCAAAACCCAGTCCTTCTACATGTCTCCTTCCAGATCCCGTGATTTTCGTCCCTCAGAACGGACCATCAAGGAAGTGTAGGAGAAAGCTCTGACTTTGTGGCGGCCATGTTAGCCAATACTTTTCACTTAACAAAATGGTGGAGACTCTGGCCTGGTGcagtcatttattcattctgttTAGTCTTGGATGATGACTCAGTGTGTTATATATGGCAGTACAAGATGTTTACCAGGTGTTAAGATGGTTGTGTATGACGATGGTCAAAACAATATCTGTGTAATGTCTGTAGTTTATCTCCAGTGCAAAACGTAGCTGGAAGAATGAGTTCCTGTCCTTTCCTGCTGTCTTATATGTCATCCTATGGCTCTGGGGATCATTTTTCTGTCCCTGTGAGTGAATGTCTTAACAAAGTGTTGGCATTTCTAATGGTTTGGCCCGGCTATCCAGTACATCCTGTCTCTTTAGTCTGATTTCATCACGGAGAATGTCTTCCACATCCAGGATGAAGACTAGATGGTGTGATGGCTACTGTATTACCAAATCAAAAGGATTATATCAAAAAGATTTGTAGTTCCTTAGTTTCCTTTTCCAGAGGTGGCTGAAAGAATGAACTTTTTTCCTTCCTAAACCGCACCAGCCCTGTCCCCCTGTctcaggaaaaaaggaaaatgtgaagTTAAACTATGGAAATGTAGTTTACCAAAGGCTTCATAGCCCCCTTTTTTTACCAgcttttttcatattcatattccaGCTGTGCATGTAACACTGGGAGAAAAGTTACCGAATGAGACctgaatgtatatttttattagagAGAACCATACAGTTGTATGTAAATAGTATGCTGAAGGATCAGCCCAGAcatgtaaataatgtttatttccCTGACTCAGGAATAAATGAagtagacagacaggcaggcagaccgGGGACTTGGCAGTCTGCCCTCCTTTGCCCATTTACTTACCAAatgcttttctcctcatttGGTGTTTGTTTAAACTGCTGCTTTGTTAGTCAAATGGTTtgataactgcaaaaaaaatttcaggatatatatttttactttggtTTAATTATGGTGTTTAAgactttagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478003 lncRNA downstream 6694 9620130 ~ 9620599 (-) True G402892
TU477769 lncRNA downstream 465823 9143870 ~ 9161470 (-) True G402673
TU477770 lncRNA downstream 485470 9139017 ~ 9141823 (-) True G402674
TU477491 lncRNA downstream 1012489 8612118 ~ 8614804 (-) True G402405
TU477221 lncRNA downstream 1105249 8521358 ~ 8522044 (-) True G402142
TU478213 lncRNA upstream 61228 9730683 ~ 9731257 (-) True G403080
TU478200 lncRNA upstream 90190 9759645 ~ 9760497 (-) True G403072
TU478220 lncRNA upstream 95219 9764674 ~ 9764904 (-) True G403086
TU478269 lncRNA upstream 193578 9863033 ~ 9863314 (-) True G403134
TU478299 lncRNA upstream 227441 9896896 ~ 9897124 (-) True G403164
XM_026942383.2 mRNA downstream 14986 9586308 ~ 9612307 (-) True fam91a1
XM_026942344.2 mRNA downstream 44401 9581212 ~ 9582892 (-) True lratd2a
XM_026942443.2 mRNA downstream 211040 9386995 ~ 9416253 (-) True triqk
XM_026942283.2 mRNA downstream 375499 9227395 ~ 9251794 (-) False runx1t1
XM_026942188.2 mRNA upstream 3319 9672774 ~ 9678951 (-) False si:ch211-215i13.3
XM_026942186.2 mRNA upstream 3319 9672774 ~ 9678951 (-) True si:ch211-215i13.3
XM_026942185.2 mRNA upstream 12458 9681913 ~ 9693188 (-) False atp6v1c1b
XM_026942184.2 mRNA upstream 12458 9681913 ~ 9693188 (-) True atp6v1c1b
XM_026942147.2 mRNA upstream 26609 9696064 ~ 9700029 (-) True txnl4a
TU477891 other downstream 211086 9387002 ~ 9416207 (-) False triqk
XR_003404456.1 other downstream 250254 9376926 ~ 9377039 (-) True LOC113543915
XR_004577570.1 other downstream 375499 9227395 ~ 9251794 (-) False runx1t1
TU477767 other downstream 465823 9148511 ~ 9161470 (-) False G402673
TU476702 other downstream 2350649 7261340 ~ 7276644 (-) False fndc5b
XR_004577593.1 other upstream 833834 10503289 ~ 10503361 (-) True LOC117596479
XR_003404458.1 other upstream 834338 10503793 ~ 10503874 (-) True LOC113543917
XR_003404460.2 other upstream 834733 10504188 ~ 10504325 (-) True LOC113543919
XR_003404459.1 other upstream 835593 10505048 ~ 10505185 (-) True LOC113543918
trnaa-ugc_19 other upstream 1771209 11440664 ~ 11440735 (-) True trnaa-ugc_19

Expression Profile