RNA id: XM_026942192.2


Basic Information

Item Value
RNA id XM_026942192.2
length 2009
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC113543760
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11448455 ~ 11498259 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACAGAAAACTCGACAGAAGACGCACTCTCCTCTAAACTACTGCAGCAGGATGGCTGGAggtacactctctctctgtgcaagTGGAAATGTTTAAGTGCACGAgcgcctttatttatttaaattaaaaaaaaaaaaattaatctcgAGGCAAAACAACaagGTGAATGTGTGGCACTGATTGGTTGTGGAGCCTTGGAAGATCATGGCGGTCGCAGAATGCCCAGACTACTTTGTGCTCCACCCGAACTACCAGGACAATGTCGACCACACATCCTCTCGTGGATCAGGCAGTCTTATTCACTTCCAGCAGCCATCTAATCCAAGCTCTCCTAATCACCCTGATGATGATGTCGATCTAGAGGCTTTGGTGAATGACATGACCTCCATGTCGCCCTATGGGGGCCTCTACTCTTTTAAGACGCAGCACTCTGACACTGTCCCTCTCTTGCACAATGGCCAAGGCACTGGTGTCCAGATTAACAGGGTTGGTCTTCCGCCACATGCGTCAAATATCCAAGCGAAGGCTACTCACTCACCTGCCCAGAAAGCCTGCCGCTCCCAACCTGTCCACATACTGGCTGTTAGAAGGCTACAGCAAGAGGAGCAGCAGGTTCGCCCTGCATCTCTGCCAGCAATCCCCAACCCTTTCCCTGAGCTATGCAGCCCTGCAGGTTCCCCGATACTCAGCAGTGGtttgatgccacagccatcagaTGTGCATATCATCAAGGTCTTTAGTGAAGATGGTGTTGGGAAGGTGGTGGAAGTTCCTGCTCACATGACAGCCAGAGATGTGTGTCAGCTCCTGGTTTATAAGAGTCACTGCCTGGATGACAACTGCTGGACTTTAGTAGAGCATCATCCGTTGCTTGGACTAgagaggtGTTTGGAGGACCATGAACTGGTGGTTCAGGTGCAGGCCTGCATGTCTGCAGAGAGTAAGTTCCTCTTCAGGAAGAACTATGCCAAGTACGAGTTCTTCAGAAACCCACTGAATTTCTTCCCAGAACAAATGGTGGCGTGGTGTCAAGAGTCCAATGGCACAATTCCCCCATCTCAGCTTCTGcagAATTTCTTGAATTCCAGCCGCTGCCCTGAGATCCAGGGCTTTCTTTACATGAAGGAGACAGGCCGCAAGTCCTGGAAGAAGCTTTACATGTTCCTGCGCCGCTCTGGCCTCTACTACTCCACTAAAGGAATATCCAAGGAGCCCAGGCATCTGCAGTTGCTGTCAGATCTGGAAGAGAACAGCGTGTTCACCATGACGACAGGCAAGAAAGTGCATAACGCTCCCACAGACTACCAGTTCTGCATTAAGCCTACTAAGGGCACAACAGAGCTGAAAGATCTGAAGATGCTCTGTGCTGAGGATGAGCAGAGCAGAACATGCTGGATGACTGGCTTCAGAGTGTTTAAGTATGGAATTCTGCTTTACCAGAACTACAAGATCCCTCACCAAAGACAGTCACCAGTCTCGAACTTCACAACACCAGTGAGGAGTGTGTCAGAGAATTCTCTGGTTGCCATGGATTTCTCGGGGAGGACAGGCCGTGTGATTGACAATCCTGTGGAAGCAATGAGTGCAGCGATGGAGGAGGGACACACTTGGAGAAAACGAAGTCAGCGAATGAATGTATCGGGCCATCCTAGTTCCCCTCATCCATCCTCTTTAAATTCAGTGATCCACCGAACACAACTGTGGTTCCACGGCCGCATCATGAGAGAGGAATCCCACCGTATGATGATGCAGCAGGGTCAGGTGGACGGGTTGTTTCTTTTGCGGGATAGTCAGAGCAACCCAAAGGCTTTTGTTCTCACTCTGTGCCATCACCAGAAGGTCAGACACTTCCAGATCTTGCCTTATGAAGAGGATGGTCAGATCTTCTACAGCCTTGATGATGGTTCCACCAAGTTCACAGACCTGATCCACCTTGTAGAATTCTACCAACTTAACAGAGGAGTCCTACCCTGCAAACTCAAACACCCCTGCACCATGGTGGCCTTATGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479143 lncRNA downstream 55880 11395737 ~ 11396040 (-) True G403851
XR_004577563.1 lncRNA downstream 88964 11327698 ~ 11362956 (-) True LOC117596437
XR_004577564.1 lncRNA downstream 191529 11256791 ~ 11260391 (-) True LOC117596438
TU479108 lncRNA downstream 238082 11211886 ~ 11213838 (-) False G403823
TU479193 lncRNA upstream 33145 11531293 ~ 11533016 (-) True G403893
TU479300 lncRNA upstream 170615 11668763 ~ 11696191 (-) False G403981
TU479299 lncRNA upstream 173519 11671667 ~ 11688373 (-) True G403981
TU479303 lncRNA upstream 181107 11679255 ~ 11680996 (-) True G403982
TU479297 lncRNA upstream 193556 11691704 ~ 11696191 (-) False G403981
XM_034301801.1 mRNA downstream 21602 11419153 ~ 11430318 (-) True LOC113543901
XM_034301644.1 mRNA downstream 54581 11384193 ~ 11397339 (-) True LOC113543744
XM_026942217.2 mRNA downstream 177608 11243505 ~ 11274312 (-) True LOC113543771
XM_026942428.2 mRNA downstream 454924 10991712 ~ 10996996 (-) True stmn1a
XM_026942218.2 mRNA downstream 1036202 10412385 ~ 10415718 (-) True cited4a
XM_026942158.2 mRNA upstream 19782 11517930 ~ 11523343 (-) True LOC113543737
XM_026942089.2 mRNA upstream 27368 11525516 ~ 11529036 (-) True LOC113543691
XM_026942160.2 mRNA upstream 43296 11541444 ~ 11552179 (-) True si:ch73-109i22.2
XM_026942161.2 mRNA upstream 43296 11541444 ~ 11552175 (-) False si:ch73-109i22.2
XM_034301721.1 mRNA upstream 225429 11723577 ~ 11732473 (-) True LOC117596452
trnap-ugg_24 other downstream 10334 11441515 ~ 11441586 (-) True trnap-ugg_24
trnaa-ugc_19 other downstream 11185 11440664 ~ 11440735 (-) True trnaa-ugc_19
XR_003404459.1 other downstream 946735 10505048 ~ 10505185 (-) True LOC113543918
XR_003404460.2 other downstream 947595 10504188 ~ 10504325 (-) True LOC113543919
XR_003404458.1 other downstream 948046 10503793 ~ 10503874 (-) True LOC113543917
TU479536 other upstream 279221 11777369 ~ 11779203 (-) False si:ch73-347e22.4
trnay-gua_12 other upstream 312235 11810383 ~ 11810470 (-) True trnay-gua_12
trnay-gua_13 other upstream 313729 11811877 ~ 11811964 (-) True trnay-gua_13
trnay-gua_14 other upstream 315220 11813368 ~ 11813455 (-) True trnay-gua_14
trnay-gua_15 other upstream 316737 11814885 ~ 11814972 (-) True trnay-gua_15

Expression Profile