RNA id: XM_026942211.2


Basic Information

Item Value
RNA id XM_026942211.2
length 5920
RNA type mRNA
GC content 0.46
exon number 24
gene id gabbr1b
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6227853 ~ 6337451 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATGAGATCTGTCCGTCGTCGTCTGTGTGTGGAGCTCTGTCCGTTTTCCGCCAGATTAACActcttatatttatttacactattATGTGCGCGTGCTCGCGGCTCTCCTCTAGCAGACTGAACTGCAGTCGCATATCTGCATATTAGATCTTACTTTCATTTCTGGCAACATTATAAATTGCTCGACATTTGGTGggtaattttttcccccccttgCAAGTCCTAGGCGACGGAAACATGGCAATATAAACACAGGCGTATGGTATTTGTGAGTATATCTCCTCGTTTTTGGATACATCTAATTCCTATCCGAATttctaaatctaaaaataataatatctgatctgatctgatctgatgtgATCTAAgttgtcaggtttttttttttaaatcgagCAATACGTTGAAGGGAAacactgttattattaataatattattattattattattattattattattattctgtaacaTATTGCaccttattttgtttttatcccACCAAATAATTTGACTGTTAATAAtctaaatatatagatatatttatgATCATAAACATAATGTGCAAATGATCTtgcaatgttattaatattaatcgTATAGAAAGcaattttttggaaaaaaacaaaatcagagTGCCAGCTGTGAAgctgagaagttttttttttccagtcatttttaaaatcttttaatgcAAGAGCAAGAATTATTTTTCCGGCTTAATATAGACACACtggatatatatacacacatagccTATACCAAGCTCTTCTCTGGGATCATCTCTATATACATCCAGTCCTAATACAAGGTGGAGGCATGACGctattattttttcatgtgaTAATATTCATGTTCGACTCCTTCACTGAGGCTTCACATAATACCACTGCAGGCTGTGCAATCATTCGTCCACCCAGAGATGGAGGGATAAGATACAGAGGCCTGACCCAAGAACAGatCCGCAGTGTGCAGGTCTTACCAGTGGACTATGAGATTGAATACATCTGCAGGGGGAACCGGGTCATCGTGGGGCCTAAGGTCAGGAAATGCCTTCCTGACGGCACCTGGACTGATCTCAGCCAGCGCAGCAAGTGCTtgctgccATGTGCACCAGTGTGGACGTCTCTGGAGAATGGCCGCGTAGTGGTGTCTCCGCCCGGCCCGGCAGTGGAGGGCACCGTGCTGCGATACAGCTGCCTGAGCGGCTTCAACCTTGAGGGCAGGAACACAACGCAGTGCACCAAACTGGGCACGTGGGACTCTCCCAAACCCACCTGCCGCTACAACAGACACCACACAGGAAAGAAGAAGCTCTACATCGGCGCCTTGTTCCCCATGAGCGGAGGATGGCCCGGGGGTCAAGCGTGCCTCCCTGCCGCTCAGATGGCCCTGGACTTGGTGAACAAGAGGACGGACATTCTGCCAGACTACGAGCTCGAGCTGATCTACTACGATAGCAGGTGCGACCCGGGGGAAGCCACTAAATTGCTGTATGACTTGCTCTACACGGAGCCTATAAAAATCGTACTGATGCCCGGCTGTAGCTCAGTGTCCACGCTGGTGGCTGAGGCAGCTCGTATGTGGAACCTCATAGTGCTGTCGTACGGCTCCAGCTCTCCGGCTCTGTCCAACCGTCAGCGCTTCCCCACGTTCTTCCGCACGCACCCGTCTGCCACGCTGCACAACCCCACACGCGTGCAGCTCTTCCAGAAGTGGAAGTGGACCAAGATCGCCACCATCCAGCAGACCACCGAGGTCTTCACTTCCACGTTGGATGATTTGGAGCAGAGAGTGAAGGAGGCCGGAATCGAGATCAGCGTGAGGCAGAGTTTTCTCACCGACCCTGCTGTGGCTGTCAAGAACCTTAAGCGCCAGGATGCTCGGATCATCGTGGGCCTGTTCTATGAGACGGAGGCCCGGAAAGTATTCTGTGAGGTCTATAAGGAGAAGCTGTATGGAAAGAAGTACGTCTGGTTCCTGATTGGCTGGTACGCTGACAATTGGTTCAAGATAAAAGACCCATCAATCAACTGCACCGTGGAGCAGATGACGGAGGCGGTGGAGGGCCACGTTACCACGGAGATAGTCATGCTCAACCCTGAGACGGTTCGAGGAGCCTCCAATCTGACCTCGCAGAAATTCCTGACCCAGCTGATGTCTAAGCTGGGAGGGAAGAACCCGGAAGAAACTGGAGGTTTCCAGGAAGCGCCGCTCGCCTATGATGCAGTGTGGGCTCTCGCTCTGGCACTCAATAAGACTGTCGGGCCATTAAGGGCCAGAGGCCGCAGGCTGGAGGACTTTAATTACAACAACAAGGACATTACTGCTGAGATTTACCGTGCCCTCAACACCAGTTCATTTGAGGGAGTCTCCGGTCATGTTGTGTTTGACGCACAGGGATCGAGAATGGCTTGGACTCTGATCGAGCAACTGCAAGGAGGGAGCTATAAGAAGATCGGATATTACGATATGACCAAAGGCAATCTCTCCTGGTACGGGAACGACAAGTGGATAGGCCCTGGTCCTCCAGCAGATCAGACGGTAGTGATTCAGAAGTTCAGATTCCTGTCTCAGAAgctctttgtgtctgtgtcgGTGTTTGCTGGACTGGGCATCTTACTGGGCATCGTGTGTCTCACGTTCAACATTTACAACAGCAACGTCAGGTACATTCAGAACTCGCAGCCGTACCTGAACAACATGACGGCCGTGGGCTGTATGATGGCTCTGGCTGCCGTGTTTCCTCTGGGGATCGATGGGCTTCATGTCCGTCGCTCTCAATTTCCTGTAGTGTGCCAGTTCCGTTTGTGGCTGCTCGGGCTCGGCTTCAGTCTGGCCTATGGCAGCATGTTTACAAAGATCTGGTGGGTGCACACGGTTTTCACCAAGAAGGATGAGAAGAAAGACAAGCGAAAGCATCTGGAGCCCTGGAAGCTCTACGCTACGGTCGGTGTGCTTCTGGTTATTGACGTCCTGTCCCTCATGATCTGGCAGATTGTGGATCCACTGCACATCACAGAGGAGAAGTTCACGAGAGAGGCGCCTAAAGAAGACTTGGATGTGTTGATTGAGCCTTTGCTGGAGCACTGCAGCTCTGAGAAGATGAACACATGGCTGGGGGTGGTTTATGGCTACAAGGGCTTATTGTTGCTGCTTGGCATCTTCCTCGCCTATGAGACCAAATCTATCTCTACAGAGAAGATAAATGACCACCGAGCCGTGGGAATGGCCATCTATAATGTCTCTGTTTTGTGCATGATTACAGCTCCTGTCACCATGATCCTGTCCTCAAAGCAGGATGCTTCTTTCGCTTTCGCCTCTCTCGCCATCGTGTTTTCCGTCTACATCACTCTAGTCGTGCTCTTTGTCCCAAAGATGCGAAGGTTAATCACACGTGGCGAGTGGCAGTCCGATCAGCAGGAGACCATGAAGACTGGCTCGTCCACTAATAACAATGACGAAGAAAAATCTCGCCAGCTGGAGCGAGAAAACAAAGAGCTGCAGAAGATCATCCAAGAGAAGGAAGAGCGTGTGTCCGAACTGAGGAACCAGCTCTCAGAGCGACAAGCCTTGCGCTCCCGAAGACGTCCGTCGTCCACCAACCTGAATCACAGCACCCCTCCTCTTCCAGTCTCTCACACTGACCCCAAATCTCTCCTCCCTCCACCAGGATACCCTCTTCCCACCTCGGACAATCATTCTCTTCCTCCGACCTTCTCCAACTCTACCAGCGTTTACCAGGCAGATGGCAAGATCAGCCGCAACAACTGCCACGCCAGCCGCCTGCAGCTCCTCTACAAGTGAGGCAACAAAAGATCAAGGAATGTGGCAGGAAGAAGACCTGAACTAAAAGGGGGAAGGGGCACAAATTTGTTCATCGTCTACCTGTTTCCTTGTCTTATACCTTGGTGTTTGTTCCCTCATTTTGAAACATGTAGGTGGAGGAACATTCAGCTAGACCTCATCACGTCATGTCAAAGTCGCGCTCATTGAACCTGCATTTGCAGTGGTATGGGAATTTTCCTTCTATGAAAAAGGCTAAATCTGGGTGACTTGCAGAAGACCTGTAGCCTTCCTTTGAAAAGTTTCAGAGAGTGGATCATAAATCTCTAATATGAGGTATCTGGtatctaaaatggtttttgaATTACCGTCTTCATAGCTGAGTTACCTGATCACTTAGCATGTCTCGGCATGTTGTAATAGAGCTGGAAAGTGCTGGAGAGTgcttttttatgtagaaaatgtAAGAGGTGGGTCTGAATTGGTGTTGAATCTTCCTGAACAGTAATTATTATGGTCTCATCCCCCTTCCATCTTAAAccttaagacttttttttccacaggacGTGTTAGAAGGGAAATCTGTCAATTTTGCAACCGCGTTTTTACCATGACATCATTGCTTATTCCCTGAGGCATGCAGCTAGTAGTGTTGCATAATTAACCTGTGAAAAGGATTTATAAGATCTTGGTTGCATTGTTTCGCACATTAATGGGTGTTTCTTTTGCTTCTGGCTGTTTTCGAGTTGAGCATGAGATGGCAGACCTGCTCTGATCTAACCTTGGGGTGGATCAATTGCTTAAGGGAATAATGATCAAACATAAAAAGCATTTACAGCTTTTGTTGGTTGAGTGTGTTTAATGACTGTGCTGTTCTTCAGTGGGTGAGCAAGGCATGGTTAGGATTGTTGCGTTTTATGGTCCTACCTTTGAAGTTGTCAGTGTTACGAAGCACCATTGCACATCCCGACCCTGGAATATGGTTCTATTTAAGCGAAATTAAAAACCTGAAGGTATTTTACATCTgagcttgttttgttttctttcaaggCCTAATCTGAACAGATGCTCAGAAATGACGTGCATTGGTTTTGGCTGCAGTAGCTTGGCCTCCCACAGTTTAGTGCAGTAGATGTTCCAGAGTTTGCAGATGTTGCACTGTTGCATGTTTAAAAGCCTACTGTGGCAGATtgcaagtgtgtgatttgattGATTTTATGTAGCTtatcttttttcctccccacAGATGAAAGCATTAAATTTAATCTACGAGCTGCTATAATCCAGTTAGCTTCTTAACGACACCTGCATAGAAGCCTATTCGTGTCACTCAGTCCAGCGATGTGAGAGTTATAAAGTTATCATATATTATAAACCCCCCCAAAGCCCTTATAGTTCAGTGAAGAGAGGGGATTGCTGTAGAAGGCATCACATGAGTCATAAAACAACACTCCCCACACTTTTTTCTGTCACTTCTTGCAGTTTCCTCTCAGCACAAATCCCTGTCTTGTGGTTTCATACTGACTTTTGATGAGAAAAACCCAGGGTTGCGGTACTTTTTCAGTGTAAGCTCTTACCTGTTCTGTTCTCTGGGTCCTTGCATTGTGCAGTCTTTCTAAGTATGTGGGGGGTGGGAAGTCATTCTTAGTGTTTGAAATACCAGCTTGGATCCAGGGCCTGTGTgacttttagcttttttttgtctcacagCCTTTGATTCACCTCAGACTGTGCAGAATCGGTTCCTGCAAGGATTCTGTGCATAACGCAACACAGTGTTATTCATCTGtttacatgaaaatgtttatgaCAAAGGCACATGAACAAGaaatttgattttatattttattatctcACAATCATTCTTAGATGGCTGCATTTCTGGCATTTTCAAATCGATTGACAAGAAACTCCAGCTATAATCATCCGGACATTATGCACATACAAAGTGTGTACATGTTAGCTGTATTCTCTTGCACATACGATATAAAGTGTGTACAGTAAATTGTATTCCCATGTGGTATtgaaagtatatttatattcaccATTATAGACTTCAGATGTTCAGATTCTGTCAGATGCAACAGAACTGGTGTCTATGGATAAATAAAGATTGTTTTTCTACTATAGTG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0035095 behavioral response to nicotine biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004965 G protein-coupled GABA receptor activity molecular_function

KEGG:

id description
K04615 GABBR; gamma-aminobutyric acid type B receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476142 lncRNA downstream 39444 6187973 ~ 6188409 (-) True G401243
TU476110 lncRNA downstream 40590 6096979 ~ 6187263 (-) True G401230
TU476060 lncRNA downstream 206088 6021554 ~ 6021765 (-) True G401196
TU475958 lncRNA downstream 256679 5907147 ~ 5971174 (-) True G401106
TU475747 lncRNA downstream 415841 5811344 ~ 5812012 (-) True G400913
TU476302 lncRNA upstream 22303 6359754 ~ 6359977 (-) True G401388
TU476320 lncRNA upstream 67855 6405306 ~ 6405878 (-) True G401403
XR_003404449.2 lncRNA upstream 98080 6435531 ~ 6437074 (-) True LOC113543850
TU476306 lncRNA upstream 98089 6435540 ~ 6437028 (-) False LOC113543850
TU476428 lncRNA upstream 228586 6566037 ~ 6567293 (-) True G401482
XM_026942293.2 mRNA downstream 18866 6189092 ~ 6208987 (-) True sacm1la
XM_026942387.2 mRNA downstream 43912 6175854 ~ 6183941 (-) False LOC113543872
XM_026942386.2 mRNA downstream 43915 6175854 ~ 6183938 (-) False LOC113543872
XM_026942384.2 mRNA downstream 43916 6175854 ~ 6183937 (-) True LOC113543872
XM_034301530.1 mRNA downstream 57146 6150852 ~ 6170707 (-) True skiv2l
XM_026942445.2 mRNA upstream 12434 6349885 ~ 6357426 (-) True sh3bp5lb
XM_026942116.2 mRNA upstream 23174 6360625 ~ 6370712 (-) True gtf2h4
XM_026942095.2 mRNA upstream 34166 6371617 ~ 6374500 (-) True polr1h
XM_026942250.2 mRNA upstream 55518 6392969 ~ 6405009 (-) True mgat1b
XM_026942252.2 mRNA upstream 55518 6392969 ~ 6403928 (-) False mgat1b
TU476079 other downstream 52593 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 638106 5587398 ~ 5589747 (-) True G400815
XR_004577542.1 other downstream 1219392 4961102 ~ 5008461 (-) False sept7a
XR_003403516.2 other downstream 2094931 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 2866027 3361748 ~ 3361826 (-) True LOC113534843
TU476305 other upstream 34199 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 98536 6435987 ~ 6436048 (-) True LOC113543912
TU476702 other upstream 923889 7261340 ~ 7276644 (-) False fndc5b
TU477767 other upstream 2811060 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 2889944 9227395 ~ 9251794 (-) False runx1t1

Expression Profile