RNA id: XM_026942220.2


Basic Information

Item Value
RNA id XM_026942220.2
length 4857
RNA type mRNA
GC content 0.44
exon number 10
gene id smap2
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 8394523 ~ 8417397 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAGGCGGGGTTTGTCGGAATACGGGTAGAGGAGGAGACCGCTGAAGTGAGTAGCTGTCGGTGCGCTTGGAAACTgataattgaatatatataatataaatgtagcgataaaaagaggaaaaagtcGTATTGATATTGAAATTGGGAATTTGGGAAGAATTGTTCGACTGACTGAGAAGAAGTTGGGAAGCTAGGCGGCTCTCACAGCTAACGTTCTTAGCCGGTCAGGTTTAAATCGGAtataaagctgtagctttagcTCGTTTAGCGCCGTGTTGGCGTTTTCACCGCGCGCTGTTTCTCTCAGCAGGAGTCCGGTTCGGGTATCTGGGTCCGGTTCGGGTGTTTGGGTCCGGTTCGGGTGTTTGGGTCCGGTTCGGGTGTTTGGGTCCGGAGACACCGAGAGTGCCGCGTTGTGAAGAGGAGAAGAGGCGCGTGAAGGTGCAGAATGACGGGGAAATCAGTGAAAGATGTTGACCGTTATCAGGCGCTGCTGTCATCACTGCTCGCGCTGGAGGAAAACAAGTTCTGCGCTGACTGTAGAGCTAAAGGCCCCAGATGGGCATCCTGGAATTTGGGAATCTTCATCTGTATCCGCTGTGCAGGAATCCACCGGAATCTCGGCGTTCACATATCCAGGGTCAAATCTGTCAACCTGGACCAATGGACACAGGAGCAAATTCTGTGTATGCAGGAGATGGGGAATGCCAAGGCACGGCGCCTGTACGAGGCCTTTTTACCCGAGTGCTTCCAGCGTCCAGAGACAGACCAATCAGCTGAGGTCTTCATCCGGGACaagtatgaaaaaaagaaatatatggACAAGTGtattgacatacaaacattccGAAAAGAGAAGAGTGAGGCAGTAACAAAAGAGCCACCTGTTGTTTTCGAGAAGATGAAGCTGAAGAAGGAGGAGCCTCAGCAATATAAGAGTAGTCCAAAGACGCAGTCTCAGTCAGTAAATGACCTTTTAGGACTAGACGCTCCTGTCGCGTCGGCTCCAGTAGCGAATGGCAATGCCAGTCCTGAGCAAAGTCTTGCACTGGATCTGTTCAGTTCCCTGCCTACAGCCACCTCACATTCAGCCAGAAGCACACCTGGCTCCAGTTCTGTGTCCAGCTCTATGGCTAAAGGTCGGGCCGCAGCGTCAGTACCGGAGAACCTGAGCCTCTTCCTGGACCCACCCACCAAAAATGAAGAAAGCAGCAGAAAGATGTCCAAAGACTCCATCCTGTcactgtacagcagtgtaacacCTCAGACCAACATGGCTGCTAATGCTGGCATGTACATGGGGGCAGCTCAAATGGGATATGCCCCTGCACCTGTATATGGGCACTACCAGGCTCTGGCCACACAGCCAGCAATGATGGGAACCATGATGGCCCCTCAGGTGAACATGCTGGGGCAGCCAGGTGTCATGGCACCAACAGGAGTGGCCACTCCATCTCAGTATATGGCAGGTGTGCAGGGGGGCATGATGGGAGTGCAGGGGGGCATGATGGGAGGCGTTGGGGCGCTGCCACAGCAGGCATACACAGTGCAGCAGACTCAGCAGCTACAGTGGAACATCACCCAGatgACTCACCACATGGCGGGGATGAACTTTTACGGCCAGAACCGCATGACGGGATACGGACAGCCCATGGGCGGAGCCTCAGCTCCCAGCACTAATCAGATGCTCGGCTCTCATGTATGGAAGTGAAAGCATGCCGAGTAAAACGTGTCGGTTTGGGAGCATCGCAATAAACTGTAAGGGAATAGAGGGAGGCTTTTACATACTCTTCATCTAACATTCCTTCAACAGTGAAGAGGAAATGTTATTTTAGAGGATCAACCTCAAGAGGAAGAGTTTCTACCTCCTGTGTTTTTCATAGCCATTTATAAATCCTGGGACCAGAAACGATGTGGTCCAGGAGTCCagcatctctctcctctctcataGCAGCTACACCCCAAACACAGCAGCTCTCCTGAGCTACACCCTAAACCCCACCCAGCGTCCTTCACTTCCTCAGACGTGTAGTAGCTGCTACGTTTTGTCTGCATGTAGGTTCTGAGATTTTAAGCTGTTCTTGCGTGTTCTTTTATCTCACTGTCGTCTTTACGCTGTTACACTTTCCCTAGTGGTACGCACTTACTAAACCTGCATGCACTGATTGCTAAGCTACACGCATAAGCAGAGACTATATAATGCGCCGAGACGTGTTTGTTAAGCATATACCTTAACTAAAGTGATGCTGCTGTTTTGGTCCCAGTGTTCCTGtcgatttttgtttgtttgtttgtttgtttgtttgtttgtttgtttcccccGGCTCCTGTGGATGTTGAAGCCTGTATTAGACAGCTGGATTGTATGCACCTTTTCTCTTTGTGTAATCTAGGGTACTGTGATGGAGCTGTAGTCCAGCTACTCTCCTTCTTCCCACTCAGGAGGGAAATGTAAGAGATGGGTTCTCATATCATACTGAGAGAAATCATAGCCAAAGAATGCAGAATTATTCatttaggtaaaaaaaaaataattataacagaTTTCAATGCTTGCAGGAACAGTTTTCTGGTGACAAGCTATTGATTAGTCCTGTGATCTCTAAATGTATATctgatgtatgtatatgtgattGCCTCAAGCACCCAATGCCACATTTGATTATATGAGCAgagcactttttattttttcactgtatATAGGGTGCTCTCCAACTGATGAGGGTCACACTTAATgttttagggtttagggttttaATCGTTCAAACCGTACCTCTCGGCTTCAGTCTGTACAGAGACCAAATGAATGTTTCTCACTCGCATCCTGTGCTCCAGACGGCAGATTTCATGTGGTTGTTTCAAGTCGCTCAGATCCGGGCTGTATTTACACGGCCTTACGTTGAAGCCTCTGAAGCACAGATATTAACTGTAAGGCTCATTAACGCGTGACACACTGAGAGTTCACTGCTGTTTTGCAATACACATTCCTCTGATCATGTGAGAGGTGGTCATGTGTACACAGATGTCCGCCTTGCTTTTGCATGTTAATACAGATTTTGCAGGAACATGAATGTGgtaaggaattttttttaaacagatttggCAATATTTAGCTTCCACTGTGCTccacatagcaaaaaaaaactttcgGACATTATTGTAACAGAATAATCTCTTGCTTTCATGCTGTCTCTCACTCTTATTTGAGAATGTATATCTCTGTGGCTGACACTGTACAATGTCGAATGCTTTGCTAACCCGTTTTATTTCTACAACTAAATGTGAAACCCTATATCTATACACATTCCATACTATAATTTTGTCCaaacatcttgaatattttACTTCCTCATAATCATCAGGAcgttattaaaggaaaaatccacccggAACAGTTTGCAATATTAATCTGTATAATCAACATTTGATCTTCAGTGGCTTCCGAGActgattttatactgaaattctgagttgacttggtctattttcactttgtttacAGGTTGCTtacgttacccacaatgccattcaatGACCTGCCAATAGTGATACCTCTACCTAAAAAGAGCagtgcagcagcgctttagttcTTTAGACCGTCCAGCTCTCTCAattcctcatctgtacactctgtttAAACAGATCCGCTTCTGAAGCTGTacctttcatgctaataccgccGTCAATGGCGTCTAACTGGAGAAGCcgagtctctgccataactcGGAACGCAGCTATGTtgtattgcattctgggactttgagtctaACTTTTGTTGTCTCCACTAATTCTATGTCATATTAAGATGACATGAAATGTCGCTGGAAAATGCAACCACTGACCTCTCATAAGCAtaacgaaaatacagcaccagtCAACAGATTAGCACccgaatcactaaacacatcacaaatatttcagtataaagatatttaatgtgattCAGGGTGGCGTTTTCCTTTAAGGCATTTTGTTACAGAAGCATGCACGTCTGGTTTAATAATCCAAGATTTTGACCAACACTGTTCAAGTTACTAGGGGAAGAAATACAGATTGGTCATTGAAATGATTCCATAAGCAAACTATATTGCTAAAAAACTGTGTTTCTGAATGGCTTGGCATGTTCATCGGCCATAAGTCACCACTCAACACTGAAACTGTTCAACAAGACATTGAGCTGTATGGTTATGGTGTGGTTGCTTGTTTGTCACAGGAAAGAAAATGTACCTTTTCGTGTGTAAAAACCATAAAGCAATACTGGATTAGCTACAAAACATGGAGTATGCTGTTGCATCAACAAGTCAGTGTAATAGAAATCTAGCACTGTCTGCAGGATTACTGTTGTATTGAGCACTGTTGTATAGAGTAGGTTGAATATCATTAACATGCACATGCCTGCAACACACAATGACAAAACGCTCTTCTCGTTTCCCTTAGAAAACGTAAaagaatattttgtttatatcatTTTGAAAGACTTGTATTAAAGGTTTGAGAGCAGAGCATGTGGCCTCATGGCAGAGTTGGACAGAATCAGTCTGAGGAATGCCCTTCTCCTCTTCGGTGTTCCGGTGCTAATGTTTTGTTAGGACTATGTGACTGTGAGGAGAGCGGAGTTATGGATCATATTTACTTCTCTGTGAATTCTCAGTATCGGAGCAAAGCAAAGACTGCTGCAGTTCTTAAAGTTTCATCATCAAGGTCCAGCATTCTGAATGCATACATCTGTGGATAACTGAATGTGTAATGCTTAATCATGTCTGCTTCTTTTTGATATGTTTTAGGGTTTTCAAAATGTGTATATTACGAAGGCTggattaaataataacataataaagaAAGGTATTTTATCCTCA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12486 SMAP; stromal membrane-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477147 lncRNA downstream 70324 8322519 ~ 8324199 (-) True G402090
TU477149 lncRNA downstream 71446 8322156 ~ 8323077 (-) False G402090
TU476884 lncRNA downstream 476830 7869403 ~ 7917693 (-) False tmem64
TU476858 lncRNA downstream 566860 7815999 ~ 7827663 (-) True G401835
TU476828 lncRNA downstream 652766 7739349 ~ 7741757 (-) True G401813
TU477180 lncRNA upstream 2990 8420387 ~ 8448303 (-) True G402120
TU477182 lncRNA upstream 16447 8433844 ~ 8436904 (-) True G402122
TU477192 lncRNA upstream 32098 8449495 ~ 8508126 (-) True G402129
TU477221 lncRNA upstream 103961 8521358 ~ 8522044 (-) True G402142
TU477491 lncRNA upstream 194721 8612118 ~ 8614804 (-) True G402405
XM_034301795.1 mRNA downstream 456313 7927445 ~ 7938210 (-) True pip4p2
XM_026942388.2 mRNA downstream 506668 7870336 ~ 7887855 (-) True tmem64
XM_034301607.1 mRNA downstream 536324 7844463 ~ 7858199 (-) False bag6l
XM_026942393.2 mRNA upstream 34689 8452086 ~ 8544860 (-) False col16a1
XM_026942396.2 mRNA upstream 34689 8452086 ~ 8544860 (-) False col16a1
XM_026942394.2 mRNA upstream 34689 8452086 ~ 8544860 (-) False col16a1
XM_026942395.2 mRNA upstream 34689 8452086 ~ 8544860 (-) False col16a1
XM_026942392.2 mRNA upstream 34689 8452086 ~ 8544860 (-) True col16a1
TU476702 other downstream 1117879 7261340 ~ 7276644 (-) False fndc5b
XR_003404453.2 other downstream 1958475 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 2020033 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 2219263 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 2804776 5587398 ~ 5589747 (-) True G400815
TU477767 other upstream 731114 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 809998 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 959529 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 969605 9387002 ~ 9416207 (-) False triqk
XR_004577593.1 other upstream 2085892 10503289 ~ 10503361 (-) True LOC117596479

Expression Profile