RNA id: XM_026942252.2


Basic Information

Item Value
RNA id XM_026942252.2
length 3015
RNA type mRNA
GC content 0.45
exon number 3
gene id mgat1b
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6392969 ~ 6405009 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTTCtgtgtcttgctctctctctctctctctctctctctctctttctctctctgtctctgtcatttGTTTCCTACTGATCTGCTTCTTCTTGAGAGCTGAGAGAGCGAAGAGAGACGTGGAGCAAAGTTTCATATACAGCTTTCTCCTCCCTTCGGTCTCTCCTTTGGTGCCACTGGGCCATGGTTCGTAAGAAAGGCTCCCTTATCTTATGCGGAGCGGTTCTGTTTGTCGCCTGGAATGCCTTGCTGCTTCTGTTTCTCTGGGGAAGGCCACCCATTGGTCGACTTGGAGACGGAGGCGGAGCTGAACCCGGCGCAGGAGAGGAATGGCAAGCTGGAAAAGGGAAGCGAGGTGGAGCCAGCGGGCTGGCGGGCGAAGTGATCCGATTGGCAGAAGAGGTGGAATCGGAATTGGAGACTCAAAAGAAACTCCTGAAACAGATACAGAGCCACAGATCTTTGTGGGAACAGAGTAAAGAATTGAGGAAAAAAGAGACTGAGGAGGCAAAGGACAAAAAAGACGAATTTAAAGAACCTCAGCAGTTGCTCCAGTTACCCACCTTGAAGGGAAATGAAATTATTGTAAAAAACAAGCAGGTTCCTGTTGTCTCAAACCCTCCACCAGACACAAAGCAGGACAAAGAGTCAGACAATGACAAACCGTCGGACAAAAATAACGTGGACCTTACAGATCCTAGTCCTCAAACTGTCATCCCGATCTTGGTCATCGCTTGTGACAGGGTTACGGTGAAAAGAAGTTTGGACAAGCTGATACAGCACCGGCCTTCAGTGGAGCTATATCCAATCATCGTGAGCCAGGACTGCGGTCACTCCGATACAGCCCGGGTCATTGGCTCCTATGGCAGTCAGGTGACCCACATCAGCCAACCAGATCTCTCTAACATTCCTGTGCGGCCCGATCACCGGAAGTTCCAGGGTTACTATAAGATCGCCAGACACTACCGTTGGGCCCTGAACCAAGTCTTTAACACGTTTGGTTACTCCACTGTGGTCATCGTTGAAGACGACCTGGAGGTGGCGCCAGACTTTTTTGAGTATTTCCGTGCTCTCCACACGATCCTGCTCTCCGACCCGACACTGTGGTGCATCTCAGCCTGGAACGATAACGGTCGTGACGGCCTGGTGGACCCGGGCAAGCCTGACCTCCTCTACCGGACAGATTTCTTCCCAGGTCTCGGATGGATGCTGTTGAAGGAGTTGTGGGCGGAGCTGGAGCCCAAGTGGCCCAAAGCATTCTGGGATGACTGGATGCGTCACCCAGAGCAAAGAAAAGAGCGTTCCTGCATTCGGCCAGAGATCTCCAGAACTATGACGTTTGGCCGAAAAGGAGTCAGTCTGGGTCAATTTTTCGACCAGTACCTGCGCTACATTAAACTCAACACTGAATTTGTGCCTTTCACTAAACGGGATTTGTCTTATTTGGTCAGGGAGCAATATGATGAAGACTTTAATAAAGAAGTGTACAGTGCGCCTTTGGTGAAAGTGGAGGAGCTGCAGCAGGGTGGCAGTTTGCAGGGTTCAGGACCGTTCAGGGTGCAGTACTCTAGCAGAGACAGTTTTAAGGTGTTAGCCCGGAATTTGGGAGTGATGGACGACTTAAAGTCTGGTGTTCCACGTGCCGGTTACAGGGGCGTGGTCAGCTTTCTCTCTCGTGGTCGGAGGATTTATTTGGCACCCCCTGAGGGCTGGACAAAATATGACACAAGCTGGAGCTGAAGGGTCTCATATGGAACATGGACTGAGTATCAGAAACATGCAAGAAGACACCCATGCAAGAGGAGATGATCATCCTCttaaaccaaagaaaacatGCATGGTAGAGATGGGAATGCACAGTCAAAATGTCAGAGATTTTATGAAGGAAGGCAGCTTTGTTGCGTTCTGATCATGTACCTggcattcacactagcaagcgacaaaaTTTCTAATGTCACTTCAGGTGTGTCACTTGTGGTGGCGTGTGGCGACTGCTACTATTATCACCTGTGGATGTGCactggctgatttttttttttaactactggTATCAGATGTAGtagtcttttattttcttctcttttttcacacCAAAGGCTGTTGAATGAGAACTAAACACGGGTCCGAAACTGATAGTGTGAGAATAGTGATTCCGGGAGACCATTGGAGTTTACTGGAGCCAgtcatttgcatttttcttttcagtgcaCCATGCCTAACGTGCATAGAACTGAGAATGTCGAATTCAAATGTCAAAGATTGTGGTTCCATGTCATTCAACTTGCGTAGAAAATCAATATTTGCCTGTTgatttgtcacttgctagtgtgaacatatgTTTAGGGTTAAACACCTGTTTGTACTgggaacaacaacaaaaatcaatTCCTCATGCACATACAGCAGTCGGATTCAGAGAAGACTGAAGTTAAAAGTGTTACATTTTCCATGCCAGGGAAGGCTTGACATTTTCACCGCTAAATTGTATGCTTTCTGAGTGACTATCATAAAAGATCTCTCACTCAATGACCCAGTGAGAGTTGTTTTCAGTGAGTTACTGATATTGTTCTAAAGTGACTTATAAATGAAGGTATAATTGTCGTTTAATTTGACTGATGCATTTGGACAAAAGTAGATTTTACATACCTTTTCAAGGAGCACTACTTTGGCAAAGTTCCCAAATGTGAAGCACCAAAACTTTTGTTGAAATACTCTGTAATTTGGGAGCACTTTCAATACATTTAGTCAAAGATATCCTAAATGTTGGGTTTGTTGCAAAACCAATGACCACAGAGAACTTGCTTTACGTGTTATGTCAAATGCGGTCATTTCAGTGGATCCAAGTAGACTGGACAAGAGGACAAAtcaaatctaatttaaaatatgCTGTATTTGCAGGTGTTTGTGGGAAGGTTTGATATGTTCTAATGTCTGTATGACAAAGTATAAAACCACTGCCTGATGTGttgtttataaatttaatacatTGATAATAAATGACTATTTTGATATGTCA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476302 lncRNA downstream 32992 6359754 ~ 6359977 (-) True G401388
TU476159 lncRNA downstream 142933 6247456 ~ 6250036 (-) True G401259
TU476142 lncRNA downstream 204560 6187973 ~ 6188409 (-) True G401243
TU476110 lncRNA downstream 205706 6096979 ~ 6187263 (-) True G401230
TU476060 lncRNA downstream 371204 6021554 ~ 6021765 (-) True G401196
TU476320 lncRNA upstream 1378 6405306 ~ 6405878 (-) True G401403
XR_003404449.2 lncRNA upstream 31603 6435531 ~ 6437074 (-) True LOC113543850
TU476306 lncRNA upstream 31612 6435540 ~ 6437028 (-) False LOC113543850
TU476428 lncRNA upstream 162109 6566037 ~ 6567293 (-) True G401482
XR_004577578.1 lncRNA upstream 175100 6579028 ~ 6581192 (-) True LOC117596453
XM_026942095.2 mRNA downstream 18469 6371617 ~ 6374500 (-) True polr1h
XM_026942116.2 mRNA downstream 22257 6360625 ~ 6370712 (-) True gtf2h4
XM_026942445.2 mRNA downstream 35543 6349885 ~ 6357426 (-) True sh3bp5lb
XM_026942212.2 mRNA downstream 55518 6227853 ~ 6337451 (-) False gabbr1b
XM_026942448.2 mRNA upstream 2178 6406106 ~ 6422826 (-) False vars2
XM_026942447.2 mRNA upstream 2178 6406106 ~ 6422826 (-) True vars2
XM_026942425.2 mRNA upstream 25170 6429098 ~ 6433839 (-) True c29h6orf47
XM_034301660.1 mRNA upstream 49592 6453520 ~ 6461157 (-) True si:ch211-152p11.4
XM_026942257.2 mRNA upstream 66274 6470202 ~ 6529172 (-) True adcy2b
TU476305 other downstream 18479 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 217709 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 803222 5587398 ~ 5589747 (-) True G400815
XR_004577542.1 other downstream 1384508 4961102 ~ 5008461 (-) False sept7a
XR_003403516.2 other downstream 2260047 4124249 ~ 4132922 (-) False LOC113534693
XR_003404453.2 other upstream 32059 6435987 ~ 6436048 (-) True LOC113543912
TU476702 other upstream 857412 7261340 ~ 7276644 (-) False fndc5b
TU477767 other upstream 2744583 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 2823467 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 2972998 9376926 ~ 9377039 (-) True LOC113543915

Expression Profile