RNA id: XM_026942257.2


Basic Information

Item Value
RNA id XM_026942257.2
length 3731
RNA type mRNA
GC content 0.51
exon number 26
gene id adcy2b
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6470202 ~ 6529172 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTAAAATAAGGCGCTCACTTCATCATGTTGGCTGGAGAATGCTGCGTGCGGCCGTTCTCTCTCTGGTGCCGCGGCACCGACCGCGCCTGGCCGGCACGCTGCAGCTGAGCGCTCGGCCCGTGGAGGAAGAGCAGGAGCagaagcagcaggaggaggaggaagctgaagaggaagaggaggaggaggaaggctCCGGGCTCCAGGCTGGCCCCATGCCTCGGCCACAGAGAGCCTATGTGTTGGAGGGACCGGAGGATGCGCGGGCATCCAAGTCTCCAGACTGGCTCTACGAGTCGTACTATCGCATGAGCCAGCAGCACCCGCTCAtcgtcttcctcctcctcatcgtCATGGGAGCATGTGTGTCTCTGCTCGCTGTCTTCTTTGCCTCAGGGCTGgCCATGGAAGACCACGTAGCCTTCCTCATCACTGTGCCCACTACACTGGCCATCTTCCTCACCATCTTCATCCTCGTCTGCATCGAGTCTGTCTTCAAGAAGCTCCTCCGTCTCTTCTCGTTGCTCATCTGGGGCTGCCTGGTTGCCATGGGTTACCTCTTCATGTTCTCCGGAGGGATCGTCTGTCCATGGGACCAGgtctctttctttctgttcataGTGTTTGTGGTTTACACCATGCTACCCTTCTCCATGCGGGACGCCATCATCGCCAGCATCCTCACATCCTCCTCCCACACTCTGGTCCTCAGCGTCTGCCTCTCAAACACAACACGGCATGCCGAGCCACTCGTCTGGCAGATGCTGGCCAACATCATCATATTTATCTGTGGGAACATGGCAGGCGCGTATCACAAGCACCTGATGGATCTCGCTCTGAAACAGACCTACCAGGACACGTGTAACTGCATCAAGTCACCCATCAAACTGGAATTTGAGAAACATCAGCAGGAGCGTCTCTTACTGTCCCTGCTGCCCGCCCACATCGCTCGCGTGATGAAGGCTGAGATCATCCACAGGCTCAAGGGTCCAAACAGCGGCCAGGCCGAAAACACCAACAACTTCCACAACCTCTATGTACAGAGACACACCAACGTCAGCATTCTGTACGCAGACATCGTCGGGTTCACGCGCTTGGCCAGCGACTGCTCTCCAGGAGAACTGGTGCACATGCTCAATGAGCTTTTTGGCAAATTCGACCAGATAGCCAAGGATAATGACTGCATGAGGATTAAGATACTGGGAGactgttattactgtgtgtCTGGACTGCCTGAGTCTTTACCCGACCACGCCAAGAACTGTGTAAAGATGGGACTGGACATGTGTGAGGCCATCAAGAAGGTGCGAGATGCCACAGGCGTTGACATTAACATGCGTGTCGGAGTGCATTCTGGCAATGTGCTCTGCGGCGTAATTGGCCTCCAGAAATGGCAGTATGACGTTTGGTCACATGATGTCACTCTGGCCAATCACATGGAGGCCGGAGGCGTACCTGGCCGAGTTCACATCTCCTCTGTGACGCTGGAACATTTGAAGGGGGCCTATAAAGTGGAAGTGGGAGACGGCCAGAGCCGAGACTCGTATCTGAAAGAGCATGGCATTGTCACATACCTCGTCATCAATCCAAAGGGAGAGAGACGCAGCCCGCAGCTCCACTGCCGTCCTCGTCCGGTTCTCTATGGGGCGAAGATGAGAGCGTCTGTGCGTATGACTCAATACCTGGAGTCCTGGGGGGCAGCAAAGCCCTTCGCCAACCTGCACCACCGAGACAGCATGACCAATGAGAACGGCAAGATCAACACGCATgaTGTGCCAATGGGACACTATCATTTTCCCGGGAGATCAGAAAGaACAAAATCTCAGAAGAAGAGGTTTGAGGAGGAGCTGAACGAGCGGATGATTCGTACAATTGACGGCATCAATGCACAAAAACAGTGGCTGAAGTCTGAGGATATTCAGAGGATATCTCTGTTCTTTCACAATAAGACTCTGGAGAAAGAGTATAGAGCAACAGCCTTGCCATCCTTTAAGTACTACGTCGCCTGCGCATGCTTCATCTTCTTCTGCATTTTCATTGTGCAAGTTTTAGTTTTGCCAAAgaCCGCCGTGCTTAGTGTGTCTTTCGGAACGACCTTCTTGCTGCTAACGCTTATACTCATCATTTGTTTCGCTGGCCGTATACTGCGATCGGGTCGCGTGACCTCATGCTCTCTCCTCCCGAGCTCGTCCTTGCTCAGCGCCAACAAGCCCTGCGTCCGGCTCGTCCTCACCATGGCAACCACCGTGCTCATCCTCGTCATGGCCGTCTTCAACATGTTCTTTCTAGAGGAGAAGGTGACAACAGTGGCTGCACCGAACATCTCCAATGAGACCGTCTATGGTGTTTATGGCCAAACCACTCAGTCCTCAGACAAGTTCTACTTGCCCTACTTCATCTACAGCTGCATCCTGGGCCTCGTCTCCTGTTCTGTGTTCCTGAGGATCAATTATGAGCTGAAGATGGTGATCATGTTAGCTGCTGTGGTGGCCTACAACATCATCATACTCCAGACCCACGCTGCAGTGCTGGACAAGTACAGCATGGCTCTCTATAAGACCCAGCCATTGGACAgACCTGGTGTTCTGAAAGACTTGAAGACAATGGGTTCTGTCTCGCTCTTCATCTTCTTCGTCACTCTGCTTGTGCTGGCGAGGCAGAATGAATATTACTGTAGGTTAGACTTCCTGTGGAGGAACAAGTTCAAACGAGAGTGTGAGGAAATCGAGACCATGGAGAACCTGAACCGTGTGCTGCTGGAGAACGTTCTTCCAGCCCACGTGGCGGAGCATTTCCTGGCTCGAAACTGGAAGAATGAGgatctCTACCACCAGTCGTATGATCTGGTGTGTGTCATGTTCGCCTCCATCCCGGACTTCAAGGAATTCTACACAGAGTCGGACGTGAACAAGGAGGGACTGGAGTGTCTCAGGCTCCTCAACGAGATTATAGCAGATTTTGATGAGTTACTGTCCAAACCCAAATTCAGTGGAGTGGAGAAAATAAAGACGATTGGCAGCACCTACATGGCTGCTACTGGACTAAACATTCCTCCTGGACAGGATTATGCACAGGACCATGACCGGCAGTACATGCACATTGGCACAATGGTCGAGTTTGCCTTCGCTCTGGTTGGGAAACTTGatgttattaataaacattccTTCAATGACTTCAGGCTGCGAGTGGGAATAAACCATGGCCCTGTAATCGCAGGGGTAATCGGAGCACAAAAACCGCAGTATGATATCTGGGGTAACACAGTGAACGTGGCCAGCAGGATGGAAAGCACTGGGGTTCTTGGGAAAATCCAGGTAACAGAGGAAACGAGTCGGATCCTCCAGACACTGGGCTACATGTGCTCGTGTCGAGGGATCATCAATGTGAAGGGGAAAGGtgacctgaagactttctttgTACACACTGAGATGAGCAGATCATTATCGCAGGGGACTGTAATGCCTTGACCGCCTCATCTCGCTCTTTCTTtatgtttctctcacacacactacaaaaaaGGGACATTTGTACAGCAAACTTCATCTCAACCAATAACAACCACAGTAAACAGATCTTCATTTCTCACCACGGATTGTATGGACTTAGTGTGTGAGcaggcactgtgtgtgtgtgtgtctcccacTTTAGAGCAGAACAGCTGGGTGTCTGTCAAATATTTGTGTTCATATTTTGTTGCTGCCATTTTCTTATCCATTAAAGATTTCTATATAAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004016 adenylate cyclase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K08042 ADCY2; adenylate cyclase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404449.2 lncRNA downstream 33128 6435531 ~ 6437074 (-) True LOC113543850
TU476306 lncRNA downstream 33174 6435540 ~ 6437028 (-) False LOC113543850
TU476320 lncRNA downstream 64324 6405306 ~ 6405878 (-) True G401403
TU476302 lncRNA downstream 110225 6359754 ~ 6359977 (-) True G401388
TU476159 lncRNA downstream 220166 6247456 ~ 6250036 (-) True G401259
TU476428 lncRNA upstream 36865 6566037 ~ 6567293 (-) True G401482
XR_004577578.1 lncRNA upstream 49856 6579028 ~ 6581192 (-) True LOC117596453
TU476432 lncRNA upstream 56681 6585853 ~ 6586574 (-) True G401486
TU476437 lncRNA upstream 65536 6594708 ~ 6594940 (-) True G401491
TU476481 lncRNA upstream 212885 6742057 ~ 6742274 (-) True G401526
XM_034301660.1 mRNA downstream 9045 6453520 ~ 6461157 (-) True si:ch211-152p11.4
XM_026942425.2 mRNA downstream 36363 6429098 ~ 6433839 (-) True c29h6orf47
XM_026942448.2 mRNA downstream 47376 6406106 ~ 6422826 (-) False vars2
XM_026942447.2 mRNA downstream 47376 6406106 ~ 6422826 (-) True vars2
XM_026942252.2 mRNA downstream 66274 6392969 ~ 6403928 (-) False mgat1b
XM_034301571.1 mRNA upstream 8 6529180 ~ 6554991 (-) True tent4a
XM_034301572.1 mRNA upstream 9 6529181 ~ 6554991 (-) False tent4a
XM_034301573.1 mRNA upstream 9444 6538616 ~ 6554991 (-) False tent4a
XM_034301568.1 mRNA upstream 9444 6538616 ~ 6554991 (-) False tent4a
XM_034301569.1 mRNA upstream 9444 6538616 ~ 6554991 (-) False tent4a
XR_003404453.2 other downstream 34154 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 95712 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 294942 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 880455 5587398 ~ 5589747 (-) True G400815
XR_004577542.1 other downstream 1461741 4961102 ~ 5008461 (-) False sept7a
TU476702 other upstream 732168 7261340 ~ 7276644 (-) False fndc5b
TU477767 other upstream 2619339 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 2698223 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 2847754 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 2857830 9387002 ~ 9416207 (-) False triqk

Expression Profile