RNA id: XM_026942265.2


Basic Information

Item Value
RNA id XM_026942265.2
length 2410
RNA type mRNA
GC content 0.45
exon number 9
gene id khdrbs1b
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7744824 ~ 7756061 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAGGGCGCCTTTTCGTCGCTCGCGAGCTGTATTGTTCTTCCATTTCCGCACGCCGCGCGCCGGACCGCTGCACTTTAGccgtgctgctgctgctgctgctgctgctcagcgTCTCCCTGCAAACCGCGTCGTCGTCGTCGTTTGTTCACCTCAACCGAATCCACCCGGCtcgagaggaggaaaaaaaagtggatttGCGGTAGTTTCACCGCCGGATTTTACAGGTTTGCTCCCCGCTCGAGGTTTTATATCGCTTTGTTAACTTTATTTACGAACTCCCCAAAATGGAGAACGAGAACAAGTACCTCCCGCAGCTGCTGGCGGAAAGAGACAGCCTGGACTCGTCCTTCATACACGCCATGAAACTTTTATCTGCAGAAATCGAGAGGGTTCAGAAAGATGAGCCGGAAAAAGACAGCGAAACCTACTTGGATCTGTTCACGGCGAAGAATATCAAACTGAAGGAAAGAGTCCTCATTCCAGTCAAGCAGTACCCAAAGTTTAACTTTGTTGGGAAGATTCTTGGGCCTCAAGGGAACACCATTAAGAGACTGCAGGAGGAGACAGGTGCCAAGATCTCAGTACTGGGCAAGGGATCCATGAGAGACAAAGCAAAGGAGGAGAGCTTGAGGAAAAGTGGTGAGCCCAAATACGCCCACCTGTCCATGGAACTCCACGTGTTTATTGAAGTGTTTGCTCCAGCGCCCGAAGCGTACATGCGCATGGCCCATGCTATGGAGGAGGTTAAGAAGTTCCTCTTCCCTGACATGATGGATGAAATTTGCCAGGAGCAGTTCATGGAGATGGGATATCTGAATGGCAGCCATGAACATGGCGTCCGAGGCAGAGGAGGCCCGATGGCCAGGGGGCGTGGAGGACCCCCGCCACCAAGGGGTCGAGGCATGGCACCGATGCGTGGTGGTGTTCCGCGTGGTGGTCCAGCCAGAGGTGGAGCGGTGAGAGGAGCTCCAGCAGGGCGTGGAGGGCCACCAGCTCAGCCTGGCAGAGGCGCTGCTGCCAACAGAGCCCGGGCTCCTGCCCCTGGATCGCAGAGGATGCCTCCTCCACCGCGCCCTCCTGCCCAGGAGTCTTACGAAGACTATTCCTATGACGAAAGCTACACAGAATCGGGCTATGAATCCTACGACAACTATTACAGTCAGCCACAGGCAGAACCAGAGTATTATGACTATGGACATGGAGAGACACAGGAAGGATATGAAAATTATGCTCAAGATGACTGGAATGGAACGCAGCGTGCTTCTGCTGGTGGGAAAGCGGCTGCTCAGAGACAAACGAAGGGAGCGTACAGGGAACATCCGTATGGACGATACTGAACTCTCAACAAGCACAACGTCATCACCCATAATGTCCCATCATGACGACTGTCTCCCACGGCAGCTCGCTCTTTAAGCAACCTGACAAAAGTAATTGTCCGCCTTTCCGTTTCGCATTTCTGCTctggacatttttttaaaggaaacctGAAAAATCAGCAACTGAACGCATCGGGACTCAATCGAAAGTTCAAGACAGTTTGAGGGGGGTttaggtatttaaaaaaacagcctgttcttattttcagttttatacTCCTAATCTCTCTCTGCTTTAATCTCTGCTTTTTTGcattgttagtttttttttctttttttgtcctctCATTGCTttggtaaaatatttaattgaagAGATAAAGCCTGACTTGTTGATGAGTTGCAGATTCCCAGTAGGCTACATTTCAAAATTCTGCTCAATATTAGGAGATCAAAAAGCCATTAAACCAAATCAATTATGTAACATAATGTAAAGGAGCGTTAATTAAGGGAAGGAAAAATCTCTTTAATGACATTGACAACAAttgattatttgttttaaatagtcTTAAAAGATGTACGATTAGCTTTAGgtttcaatattttttacatgatattttaGAGTTTTGAAATATAGCCCTAATAGACACTGTTGAGATGGACTGTCCTCAAATCcttaatttgttaaaataagTTATGGCTCTTCAAAATCTGTTCTGTAAAATGATAATTGTGTTTGGATAATTGTGTTCAAAGAGATAAAATAAGTCCGATTTTCATAGATATAATACCatgttatataaaatgcatgctcaaaCTGTTTAAGAAGGATTGGGACAACAATCTCTACAAGGGTCATCTCTTTCTAATGTAAAGGGATCCTGCAGCTAAATCCGAATTTCTTGtacatactttaaaaaaaaaaaaaaaaaatcaaatacgCCCAAACTGTACTTACTGCCATCTAGTCTCTGTACGCTCTCCAGAAAATGCAGAATGCTACCTGTGTAAGCTTGCCTAAATAGGTAACTAAATCTGTCCAAAAATGTTTTGCAGCAATTGTCAATAAAGCCTAGATTGTTTTTTATGAAA

Function

GO: NA

KEGG:

id description
K13198 KHDRBS1; KH domain-containing, RNA-binding, signal transduction-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476828 lncRNA downstream 3067 7739349 ~ 7741757 (-) True G401813
TU476827 lncRNA downstream 5580 7738610 ~ 7739244 (-) True G401812
TU476826 lncRNA downstream 6382 7735631 ~ 7738442 (-) True G401811
TU476830 lncRNA downstream 36633 7707862 ~ 7708191 (-) True G401815
TU476768 lncRNA downstream 177077 7567533 ~ 7567747 (-) True G401758
TU476858 lncRNA upstream 59938 7815999 ~ 7827663 (-) True G401835
TU476884 lncRNA upstream 113342 7869403 ~ 7917693 (-) False tmem64
TU477149 lncRNA upstream 566095 8322156 ~ 8323077 (-) False G402090
TU477147 lncRNA upstream 566458 8322519 ~ 8324199 (-) True G402090
TU477180 lncRNA upstream 664326 8420387 ~ 8448303 (-) True G402120
XM_026942190.2 mRNA downstream 243611 7481825 ~ 7501213 (-) True kpna6
XM_034301501.1 mRNA downstream 267846 7467045 ~ 7476978 (-) True txlna
XM_034301502.1 mRNA downstream 267906 7467045 ~ 7476918 (-) False txlna
XM_026942118.2 mRNA downstream 280366 7453738 ~ 7464458 (-) True eif3i
XM_034301687.1 mRNA downstream 468042 7254433 ~ 7276782 (-) True fndc5b
XM_026942299.2 mRNA upstream 25854 7781915 ~ 7784061 (-) True agr2
XM_026942300.2 mRNA upstream 25854 7781915 ~ 7783937 (-) False agr2
XM_026942288.2 mRNA upstream 32848 7788909 ~ 7798665 (-) False ppp1r10
XM_034301499.1 mRNA upstream 32848 7788909 ~ 7798665 (-) False ppp1r10
XM_026942289.2 mRNA upstream 32848 7788909 ~ 7798665 (-) True ppp1r10
TU476702 other downstream 468180 7261340 ~ 7276644 (-) False fndc5b
XR_003404453.2 other downstream 1308776 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 1370334 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 1569564 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 2155077 5587398 ~ 5589747 (-) True G400815
TU477767 other upstream 1392450 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 1471334 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 1620865 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 1630941 9387002 ~ 9416207 (-) False triqk
XR_004577593.1 other upstream 2747228 10503289 ~ 10503361 (-) True LOC117596479

Expression Profile