RNA id: XM_026942276.2


Basic Information

Item Value
RNA id XM_026942276.2
length 3359
RNA type mRNA
GC content 0.46
exon number 26
gene id abcf1
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7804783 ~ 7819711 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTCTGAAACTCTGTGGTGCTCTTGTGTAGTGAGTAGGGAAGTGTAGGCCGCATGTGCGCTGGTCTGGCATACAGAGAGTAATCTACGCATCAGTTTCACCACCTAATCACCTTTCATTAATTTAAAGGTCGACGAAAATGCCGAAGAAATCGAAAGAAGTGGCGGAGTGGGAGGGAGACGATGAAGCACAGACAGAAAAAGTTGtcaagaaaggaaagaaagacaagaagGGGAAGAAGAGCTTCTTCGATGAACTGGCCTCAGAAAGTAAGACCGAGAAGACTGAAGAGCCAGCAGTGAAAGAGACACAAGGAAAGCAGcctcaaaagaaaaagaaggaccGGCGGAAAGGGAAAGCCGGGGACgtggatgatgaagatgaagacgTCATGCAGCGACTCAAGAAACTGTCCGTCCAGCCCagtgatgaggaagaggaagaggTAATAGCAGCTCCTGTGAAAGGTGGAAAGAGAAACAAGGGTGGAAACATATTCGCTGCTCTGAGCCAGGGTCAGAGTGATGAAGATGACGAAGAGGACGATgcagatggtgatgatgacgatgatgatgaacCTAAAAATAAGAAGAACTCTAAGGCATCTGATGATGAACCTgaggaggagctggagaaaAAGGATGAGAATGAGACGAAGGAGgtgaagaagaacaagaaaacaGGCAGCAAAGCATCTAAGGAGGAGGATgtggagaaagaggaaaaacctCAGAAGGCTGCCGGAAAGAAAGAACAGCCAAAGAAAGGCAAGCCCGCTCACCAACCTCCTagtgaggatgaggaagaggaagagaaaagcgACGACAATGACACCATGAGGAGTGCAGAGGACGCGCTTGTGGCGGAGCAGAGCAAAGAACAGGAAGACCCCTATGCCAACCTGAgtaaaaaggagaagaagaagaaaaagaagatgATGGAGTATGAGCGGCAGGTGGCTAGTGTCCGTGCTCAGAACGCCTCAGAGGGAGATTTCTCAGTCTCTCAGGCTGAGCTGTCTTCAAGGCAAGCCATGCTGGAGAACGCCTCTGATATTAAGCTGGAGAGATTCAGCATCTCGGCTCACGGGAAGGAGCTTTTTGTCAACGCTGATCTTCTGATTGTGGCTGGTCGCCGCTATGGTCTGGTCGGACCAAACGGGAAAGGAAAGACCACATTACTGAAGCACATTGCAAACAGAGCTCTCAGCATTCCTCCCAATATTGATGTGCTGCTCTGTGAACAAGAGGTGGTCGCTGATGACACGCCGGCCGTGCAGGCCGTGCTGAAGGCAGACACGCGGCGTATGAAGTtgctggaggaggagaagaggctGCAGGTTTTGCTTGAGAAGGGGGAGGACAGTGTCTCTGACAGACTAGAGAAGGTGTATGAGGAGCTGAGGGCGATCGGAGCAGAGGCAGCAGAGGCCAAGGCTCGCAGGATCCTGGCTGGTTTGGGCTTCACACCTGAAATGCAGAACAGACCCACTAAGAAGTTTTCAGGTGGCTGGAGAATGAGAGTATCACTCGCCAGAGCTCTGTTCATGGAGCCCACCCTGCTGATGCTGGATGAGCCAACGAACCACCTCGACCTCAATGCTGTCATCTGGCTCAACAActacCTGCAAAGCTGGAAGAAGACCCTTCTCATTGTGTCCCATGACCAGAGTTTCTTAGACGATGTCTGTACAGATATCATTCACTTGGACAACCAGAAACTCTATTACTACAGGGGCAACTACTTGACGTTTAAGAAGATGTATGTGCAGAAGCAAAAGGAGCTCCTGAAGCAGTatgagaaacaagagaaaaagcTGAAAGACCTGAAAGCTGGAGGCAAATCCACTAAACAagctgagaaacaaacaaaggagGCGCTGACTAGGAAACAGCAGAAAGGCAAGAAGAAGGGACAGGAAGAGGAAAGTCATGAGGCCCCAGAGCTCCTGAAAAGACCTAAAGAATACACTGTGAAGTTCACTTTTCCAAACCCACCACCTCTCTCTCCACCCATTCTTGGCCTCCACAGTGTGGACTTTGGCTATGAGGGTCAGAAGCCTCTGTTCAGAAATGTTGACTTTGGTATTGATATGGAATCTCGAAtttGTATAGTTGGACCAAATGGTGTTGGAAAGAGTACACTTCTACTTCTGCTGACAGGAAAGTTGACTCCTACCAAAGGCGAGATGAGGATGAATCACCGCTTGAAAGTGGGCTTCTTCAACCAGCAGTATGCTGATCAGCTGAACATGGAGGAGTCTCCCACAGAGTATCTGCAGAGGAATTTCAATCTGCCATACCAGGACAGCAGAAAGTGTCTCGGCCGCTTCGGTCTAGAGAGCCATGCACACACTATCCAGATTTCTAAACTCTCTGGTGGCCAGAAAGCAAGAGTAGTATTTGCTGAACTTTCTTGTCGCCAACCGGATGTCCTGATTTTGgaTGAGCCTACCAACAACCTGGACATTGAGTCAATTGATGCTTTATCAGAAGCCATCAATGAATACAAAGGAGCTGTGATCATTGTGAGCCACGATGCCCGCTTGATTACCGAGACTCAGTGCCAGCTGTGGGTGGTGGAAGACCGGTTGATAAACCAGATTGATGGAGACTTCGAAGACTACAAGAGAGAAGTGCTGGAGGCTCTCGGAGAAACTCTGGTTAACAAGCAGAAAGAGTGAAAGTGCAACAAGGGGATGTGTGATGCTTCGATTTCAGTGCCGTAATTTACTCGCAAAAACCCTGGTGCTTCAGTCTCGTAACCTACAATGAAAGTTCATCATTACCACCCCAGTGTGATGCAGTGAAACTGGtttatggacttttttttttaaccaaaccgATTTCTATGAGTGGTGTGCAGGCTGACTTGAAAACCTGGTGATTAAAATCCTGTCTTCGACTGAGTATCAGCTTTTTTGGGAAGTACAGCTTGAGCTTCACCAGCGCTTAACCTACAATTGTGTTTTTCTAAATGACCTGcagtagggctgcacaatattgaTAAAAATAGCACATTGCCATTTTGATTGCCCTGCATTAGTTTGACACATTTCACTACAATATATCAAAACCCCTCCAGAAGGTTTATCTGGAACCTTCATCAGAATGCTCCCAGTACACAGGTTAGTCTGTGGATTCTTGCAATATTAGCGCACTCAATATTGTAAAGGCcaatattgtattattaatattatatatattgtgcagcctTAATCTGCAGTATAGCCGTACTGGTCTGATTTGTATGTAGAAAACAAATTAGtgcaaaaaatgaaaaccaaCTAAATATAATGGAATATTACTTATGCATCTGAGTATTGACAtagaatacaaaaataaatgaattttgcaGTA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476828 lncRNA downstream 63026 7739349 ~ 7741757 (-) True G401813
TU476827 lncRNA downstream 65539 7738610 ~ 7739244 (-) True G401812
TU476826 lncRNA downstream 66341 7735631 ~ 7738442 (-) True G401811
TU476830 lncRNA downstream 96592 7707862 ~ 7708191 (-) True G401815
TU476768 lncRNA downstream 237036 7567533 ~ 7567747 (-) True G401758
TU476884 lncRNA upstream 49692 7869403 ~ 7917693 (-) False tmem64
TU477149 lncRNA upstream 502445 8322156 ~ 8323077 (-) False G402090
TU477147 lncRNA upstream 502808 8322519 ~ 8324199 (-) True G402090
TU477180 lncRNA upstream 600676 8420387 ~ 8448303 (-) True G402120
TU477182 lncRNA upstream 614133 8433844 ~ 8436904 (-) True G402122
XM_026942288.2 mRNA downstream 6118 7788909 ~ 7798665 (-) False ppp1r10
XM_034301499.1 mRNA downstream 6118 7788909 ~ 7798665 (-) False ppp1r10
XM_026942289.2 mRNA downstream 6118 7788909 ~ 7798665 (-) True ppp1r10
XM_026942299.2 mRNA downstream 20722 7781915 ~ 7784061 (-) True agr2
XM_026942300.2 mRNA downstream 20846 7781915 ~ 7783937 (-) False agr2
XM_034301608.1 mRNA upstream 24752 7844463 ~ 7858199 (-) False bag6l
XM_034301604.1 mRNA upstream 24752 7844463 ~ 7858199 (-) False bag6l
XM_034301607.1 mRNA upstream 24752 7844463 ~ 7858199 (-) False bag6l
XM_034301603.1 mRNA upstream 24752 7844463 ~ 7858199 (-) False bag6l
XM_034301605.1 mRNA upstream 24752 7844463 ~ 7855931 (-) True bag6l
TU476702 other downstream 528139 7261340 ~ 7276644 (-) False fndc5b
XR_003404453.2 other downstream 1368735 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 1430293 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 1629523 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 2215036 5587398 ~ 5589747 (-) True G400815
TU477767 other upstream 1328800 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 1407684 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 1557215 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 1567291 9387002 ~ 9416207 (-) False triqk
XR_004577593.1 other upstream 2683578 10503289 ~ 10503361 (-) True LOC117596479

Expression Profile