RNA id: XM_034301681.1


Basic Information

Item Value
RNA id XM_034301681.1
length 5233
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC113543808
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 9760884 ~ 9903805 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccctgtttgaGGGAAACTCCGCTCGTCACTGTCCCCgctgtgagagtgtgtaagGTCGGTGTACCTGAGGACCTTCTTCCGCCTTCAGTGACCGATCCGATTCGCGCGGCTGAATAGAAACGGACTGGTTAAAAGCGATTTAAAAGCCCCACAAGCCTGTTATTTTAGGATATCAAGAAAGTAGCCATCGAGGCTAACATCTAGCCGCAGtgtatagtgtccACTAGGGAGctgtttgggattcagcctgtGCATGATGAGGGCTGCTGTGGATCTGACTTGCTTCAAACAAGAAAGAAGTTGATGTGAATTGAAGAGTTATTGACTTCCATCTGCACCTGCATTTCCAACTTTGCTTCATAgtacagctccagggttcctggttcgatcctgagtaCAGATTACTCTCCGTGTGAAGTTTTGCATGTTGTCTTCACGTGCGTGTGcctttcctccgggttctccggtttcctctcaccgCCCGTAGGTGGATTGttaactctaaattgcccctatgtgtgaatgagtgtatgagtgcATGTGCAATGGTCTGGCGTCTCATCCAGGATGTGCagtattcccgcctcacgcccagcgttcccgggataggctccggatccacctccaccctgtccaggataaagtggttactgaagatgaatgaaaggtTATACATACAGGAAAAATCTGCAGGCTAGAATATAAAAGAGCAAGAAAATACCCAAAACAAACCAAGATTACATCTGGTGACATCAGACCCAGTCATATCCTCCCACTGATGTATTGCACAAAAGCATGAAGTCCAGCCCCACCTCTGGGCCTATTGAGTGCATTCATCACCATTTAACCCAATGGATTTGCTGAGGAAGAGATTTTGGTGCATCCGGTCTGCTGAGATCCGACACCACCTTCCTCACTCCTCTTCCTCGGCTCATTCTCCTTTTGTGGAATGAAGACAGCCAGCAGGTCTTGCTGCACTTCCTCAGTGGTCCAGATGAGGCGTTACAGGACAGGGGTGTATCCCTTGCTGTTCCCCACTGTAATCAACTCGCTTCCTTTGCCATCTCCGACGCAAAGTTTTAACGCACCCAGCAGTGCAGGAACACCGTCACCTGTGGCCATCGAGACACAAAGCAGTAGTTCGGAGGAATTGGTGCCCAGCCCGCCCTCGCCCCTGCCCCCTCCACGCGTCTACAAGCCCTGCTTCGTGTGCCAGGACAAATCCTCTGGGTACCACTATGGCGTCAGCGCCTGCGAGGGGTGCAAGGGTTTCTTCCGCAGGAGCATCCAGAAGAACATGGTGTACACATGTCACAGGGACAAGAACTGCATTATCAACAAGGTGACGAGGAACCGCTGCCAGTACTGCCGTCTGCAGAAGTGCTTTGCTGTTGGAATGTCTAAAGAGTCTGTGAGGAATGACaggaataaaaagaagaaggaaagtcCGAAACCGGAGCTGACAGAAACCTATGAGCTCACAGCTGAGCTGGAGGCCATCATTGAAAAGATCCGGAGGGCACACCAGGAGACGTTCCCATCCCTCTGCCAGCTGGGCAAATACACCACGAACTCGAGTGCCGACCATCGTGTGCGTCTGGATCTGGGTCTGTGGGATAAGTTCAGTGAGCTGGCCACCAAGTGCATTATCAAAATTGTGGAGTTTGCCAAACGGGTGCCAGGCTTCACTGGACTCACTATCGCCGACCAGATCACTCTGCTCAAAGCCGCCTGCCTGGACATATTGATCCTCCGTATCTGCACACGGTACACACCGGATCAGGACACCATGACCTTCTCAGATGGACTGACACTAAACCGGACGCAGATGCACAACGCCGGATTTGGGCCGCTCACAGACCTGGTGTTCACCTTCGCCAACCAGCTCCTGCCCATCGAGATGGACGACACGGAGACAGGCCTGCTCTCAGCCATCTGCCTCATCTCCGGAGATCGTCAGGATCTGGAGGAGCCGTCCAAGGTGGACCAGCTCCAGGAGCCTCTTCTGGAAGCGCTGAAGATCTATGTGAGAAAGCGCAGACCCAGCAAGCCCCACATGTTCCCCAAGACCCTTATGAAGATCACGGATCTCCGCAGCATCAGCGCCAAAGGTGCCGAGCGAGTCATCTCTTTAAAGATGGAAATCCCTGGTTCTATGCCTCCTCTCATTCAGGAGATGCTGGAGAACTCCGAGGGCCAGGATGGACAGAGCTCTTTGGAAAAGAGCAGTGTGGAAGAAAATAGCAGCTCCGTCGATCTGAAGTCTGCCACGTCGCCCTCTCCAGAACCCTCTTCCTCGTCGAGCGAGGAACCTTAGAAGCAGAGTAGTGAGAACCCCATGTCTCTCTTATTGTGCACAGTACAAGTGGACCATCAGTGCTACCTTATCCCcagtgtaaacattttttttaaagaatttattccACCTTTCTTCATCTATGACTACAAAAACACTAGAAACAAGGACGGTTGTCCAGGATGAAAATGTGCTTTGCGCTTAAAAACATTCAAGCATTCGTACTATGGAACTTCCAACATGCACAGCCTGCAGCACACTCAAGTGTGTATGCGAGCACATTCGTGTGTTACTGAATGCCTAACAGAGGTGAAACTCCTCAGGTCTGCTGTGTATATTTTTGCTAAACCTGCATGACAGGCTCTTAATTCGTCCtccgctccctctctctctctatatgtctCTCTGCCATCGTTCATGTTGGCATGCATTGTACATACCATCGTATGAATAGACCTCTGTATGACACATTTTGTGGTGCTTTTTTAAGTCTTAATATTATCATTTGAGGCgaaacattaaatttaaagatGAACAGATGACCTTTAACCATTAGAGGGCACTATAAAGAGCATTAATGGACAATAAGCTCAGCTGTGCATCTTTAAACGAGGCTCTTCATATAAATTCCTTTAAAAGAAATCTATATAGAATGTTCTGGCATAAAGACAATATGGCAGTctaatattttctatattcatatatttaatcctgttttgtttctgtatcttcatttgtttcatatcaggaaaatacacacacacatacacacacacacacacacacacacacagtaaatgacTAGCTAATGACTAACTGTCATTACCTTTCATTAGTAATAGAGGGAGTCCACAGGAGCAGCATTTTCACTTCAAATCTATAAGTGCAAGTTGATATAAACTCTGTATTTCTGATGTGACATGCACATCTTATTGAGttgatattcattcattcacctgcAGTATCACTTTATCTTAAATCATTGTGGTGGTGAATCCGgtgcctatcccaggaatactgggaaTGAGGCGGAAATACAGTCTGaatgggataccagtccatcacagggcaccatgcacacactgtcacacctaggggcaaagTAGAGTAGCTAATCCACCCACGAgcctgtttttgggaggttggagaaAACTGGAGTATTCAGATGaatcccacacagacacggggagaacatgcaaaactttacaaagacagtaacctgagctcaggatcaaatctGGGATTTGGGAAGGAACTAAATCCAGTAAAAGTGTGTATGTGGAATTTACCCCCAAAAAAGCATCAATTCAATGTGATTACCTGAATCGCAAATCTTCCTTTAGTAGTTTTTGGCAGtaaaacatgccaaaaaaaaaaaactttctccgTTCTTTGCCCAAAACACAGTGCAATTATGGAGCACAATTCTCAAAATTCTGTGCTGATCCtaaaaaatttcttttattcAAATTAAGCTGTCTTTGTAAAAATACCTGTTATGGAAATGACTTTcagtacacacatatacacacacttctcacatgATGCAAGATTTCGAAATTACAGTGGCACTTAAAATTTACTTAAAACCTAAAACTAGCTCCTGaaacatttatatgaaattatgtaaatgtataaggCAGAGAAAGTATAATCACAGCTTCAGATGCTGGATTTTCAGTGCTTCTGATCCTTTGGGGAATCTGCACTTGAGAAATGTGGTCAGGTAGTAAATGTCACTCCAGTAGGTTCAACCACAAGAGACTGGaatcaaacatttttcactTACAGCAACTTTAAATGACTTTACATAACAgtgttacagtttttttttttctttcttcaatcGCAAGATGCCTCTTCGTCACAGctcatgaatgttttttttcctcatgcctcAGAAGCCTCAGCTCCAAACAGCAGAACTGAAGAAATCTACATTCATATCCACATCTTTAAAGAACTAGTCAAAGAACTGGTTTTCTTCAtggttattattgttgtttttattgatgatgatggtgttgatcaGTATGATGGcaacattttatgttgtgaaCTTTTCCCAGGTTCTGTTAAGGTGGTAGGTTTATTCAGCTTGTGGATATCTGTGGCCTTTCAGACCATCACGACTGAATATTATGTGTTGGTTGTGACATTGAATGTATTGTACATGCTGTACTTGTCGCTCCTGCCAAGCACAGACGGAGAGGTTTATGTATttcttcattcttcagtaaTAATATCTGTAAGTTCTGTTGCCACTCATAAAGCCCTGATTGACATCATCTCAGAGAGCCTGTAATTATGTGACTGAAACTAAATGTGACGCTCACAGTCCCACAGTTCAGTTGCactgctcttttttctcttcagaacaaatttgttttatttttaacatttacagttttcaGCTACAGTGTTGAGACATGGTCACTTTTTCCTCTAAGCTCAAGCAGCTGGACTGAATAGAGTCTTTAATGGAATAATCCTGTAACATTTGAGGAaaagttaaaagaaagaaaaacattaagaaTAAGCCGTGATTTTCTGCTGACTTTCACACCATCCTATTGCATCGTGCATCATTTTGGAGTCAAAGAAATATCATGTTTATGTGTCACGTTTgcctttttcccccaaaaaaatcCTGCAGTCATGAGGAATACTTTGATTGACTTAATGAACCCTAAAGGACTTGTGGACGGGAGCAGCACGTCTTGAAGACTTTAATGATAAAACTGTTCAGGTCATGCCTCCACAGAAGCAGCATCTatctttactgttttttttttcattttcttttttttgctcatttatgcCCTGTTTGTACATTAACAATGCTTTGTATGTTCATATGCTGTTTACCATGAACTCTCTTggtgaaataatgaaaatatatttattttaaaataaagatgtgCGGAGATATTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478200 lncRNA downstream 387 9759645 ~ 9760497 (-) True G403072
TU478213 lncRNA downstream 29627 9730683 ~ 9731257 (-) True G403080
TU478003 lncRNA downstream 140285 9620130 ~ 9620599 (-) True G402892
TU477769 lncRNA downstream 599414 9143870 ~ 9161470 (-) True G402673
TU477770 lncRNA downstream 619061 9139017 ~ 9141823 (-) True G402674
TU478437 lncRNA upstream 31184 9934989 ~ 9952324 (-) True G403262
TU478499 lncRNA upstream 186764 10090569 ~ 10094630 (-) True G403316
TU478508 lncRNA upstream 279032 10182837 ~ 10183568 (-) True G403323
TU478510 lncRNA upstream 285366 10189171 ~ 10191189 (-) True G403324
XR_003404446.2 lncRNA upstream 598506 10502311 ~ 10507050 (-) True LOC113543816
XM_026942436.2 mRNA downstream 49777 9701804 ~ 9711107 (-) True adnp2b
XM_026942147.2 mRNA downstream 60855 9696064 ~ 9700029 (-) True txnl4a
XM_026942185.2 mRNA downstream 67696 9681913 ~ 9693188 (-) False atp6v1c1b
XM_026942184.2 mRNA downstream 67696 9681913 ~ 9693188 (-) True atp6v1c1b
XM_026942186.2 mRNA downstream 81933 9672774 ~ 9678951 (-) True si:ch211-215i13.3
XM_034301578.1 mRNA upstream 151213 10055018 ~ 10069626 (-) True nr1d2b
XM_026942198.2 mRNA upstream 151213 10055018 ~ 10069623 (-) False nr1d2b
XM_026942240.2 mRNA upstream 176681 10080486 ~ 10084170 (-) True rpl15
XM_026942286.2 mRNA upstream 192319 10096124 ~ 10113933 (-) False ube2e1
XM_026942287.2 mRNA upstream 192319 10096124 ~ 10113516 (-) True ube2e1
TU477891 other downstream 344677 9387002 ~ 9416207 (-) False triqk
XR_003404456.1 other downstream 383845 9376926 ~ 9377039 (-) True LOC113543915
XR_004577570.1 other downstream 509090 9227395 ~ 9251794 (-) False runx1t1
TU477767 other downstream 599414 9148511 ~ 9161470 (-) False G402673
TU476702 other downstream 2484240 7261340 ~ 7276644 (-) False fndc5b
XR_004577593.1 other upstream 599484 10503289 ~ 10503361 (-) True LOC117596479
XR_003404458.1 other upstream 599988 10503793 ~ 10503874 (-) True LOC113543917
XR_003404460.2 other upstream 600383 10504188 ~ 10504325 (-) True LOC113543919
XR_003404459.1 other upstream 601243 10505048 ~ 10505185 (-) True LOC113543918
trnaa-ugc_19 other upstream 1536859 11440664 ~ 11440735 (-) True trnaa-ugc_19

Expression Profile