RNA id: XM_034301688.1


Basic Information

Item Value
RNA id XM_034301688.1
length 5245
RNA type mRNA
GC content 0.46
exon number 10
gene id runx1t1
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 9227395 ~ 9284493 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCGCACTGAGAAGCCCTCCACCATGCCCGACTCGCCCGCCGATGTGAAAGCACAGCCCAGGTTAACTCCGCCCACCATGCCTCCGCCACCCGGCACACAGGGAGCCCCCAGGACCAGCTCGTTCACTCCCACAACACtaacGAATGGCACCAGTCACTCTCCCACCGCACTGAACGGCGCTCCCTCTTCCCCCAATGGCTTCAGCAACGGCccttcatcctcttcctcctcttcgcTGGCCAATCAGCAGCTCCCTCCGGCATGCGGCGCACGGCAGCTCAGCAAGCTGAAGCGCTTCCTTACAACTCTGCAGCAGTTCGGCAACGACATCTCACCTGAAATCGGCGACCGTGTCCGCACACTCGTGCTGGGCCTTGTGaactCCACGTTAACCATAGAAGAATTCCACTCCAAGCTGCAAGAAGCGACCAACTTCCCCCTCCGACCTTTTGTCATCCCGTTTTTGAAGGCCAACCTGCCGTTACTGCAGCGGGAGCTTTTGCACTGTGCACGCCTGGCCAAGCAGAACCCAGCACAGTACCTGGCCCAGCACGAGCAGCTGCTACTCGACACCAGCATCACGTCTCCCGTCGACTCGTCTGAGCTGCTGATGGACGTCAACGAGAACGGCAAGAGGAGGACACCGGACAGAACCAAAGAGAACGGATTCGAGAGGGAGCCTCCGCACCCAGAGCACCCAAGTAAGCGGCCATGCACCATCAGCCCTGGTCAGCGTTTCAGCCCCTCCAATGGACTTTCATACCAGCCCAATGGCCTTCCTCACACTGCTCCACCACCCCCAGGCCACTACCGGCTTGACGAGATGGCTATTGGCCACCATTACAGAGACTCTTATCGCCACACCAACCACCGTGAGATCCGCGAGCGCCCACGGCCAATCGGGATGCACGGTGGCACACGTCAGGAAGAGGTCATCGAtcacagactcacagacagaGAATGGGCCGAGGAGTGGAAGCACCTTGACCATGTAAGAAAActgCTTAACTGCATCATGGACATGGTGGAGAAGACGCGGCGCTCGCTCACCGTGCTAAGGCGATGTCAAGAGGCTGACCGCGAGGAGCTCAACTATTGGATCCGGCGCTACAGCGATGCCGAGGACCTGAAGAAgagctccagcagcagcagcagcagccagtCGAGACAGCAGAGCCCTGCAGGCCAGGACAGCAACCCTGCAGAGATCCACCGGGAGGTGCTCCACAGGCCTGTATCCGGCTACGTCCCCGAGGAGATCTGGAAGAAAGCAGAGGCGGTGAACGAGGTGAAGAGGCAGGCCATGTCTGAGCTGCAGAAGGCCGTGGCCGAAGCCGAACGCAAGGCTCATGAGATGATCAGCACCGAACGGGCCAAGATGGAGCGCACTGTGGCTGAGGCTAAGAGGCAAGCTGCAGAGGACGCGCTGTCCGTTATCAACCAGCAGGAGGACTCGAGTGAGAGCTGCTGGAACTGTGGACGCAAGGCAAGCGAGACATGCAGCGGGTGCAACACGGCGCGCTACTGCGGCTCCTTCTGCCAGCACAAAGACTGGGAGAAGCACCACCATGTGTGCGGGCAGACGCTGCAGGCACAGCAGCAGGGCGAGACGCCTAGCACCGCCAGCTCCTCGGGCACTCCCAGCAGCAGTGCTGGCAGCCCCGCCGATACCCCCTCCGCCGCTGCCACGCCACGCTCGGACACGCCTGGCACGCCGTCAGCATTAGAGCCTGCACCACGCTAGAGCCAAACCCATCACAACCCCGCCAGGACTGTCTCACCTCGCCTCGCTTACTCAAACATGCTAATTCTAACATGCTAACCGAGAAAAAGAGGACTAGTTCCACAGAGCGATCGCCCAACTGGAGGTCCGTATCGGGTCATATTGACTTGCTATGACAGAGAACACAAAGAtattctttgtttaaaattcTCACCATCCTTTAATGCGCCCAATTGCTACTAtagattattttttgtttgtgttaaatGTTTCCTGTAAataagcagagaaaaaaaaagaaagacctCTGGATCAGCACATTAAACCTCCCGTTTGATTcgtttgtttgctgtttgtttgttttgcctgTTTTTCAGCGCTTCTTCTCCTCTCCACTAGCTGGGATATGAAACTAGTTGACCTCAACAAAAGACACTTTACCAAACAACAAACCAAGGGATTACTTCATAGCTGTTGTAAACAAagacgcaaaaaaaaaaaagtgattatatGAAAGACAGCATTCCGAGTAAGGAAGacaaaaacgaaaaaaaaagtaatggggaaaaaaaaaaacatcagggcAGGACTTTGTGGAGTTGAAGATGAATAGCATGTTAGTGAACTCAGCAGACCCTCGGCTCCGGTGTGCAGATGCGCAGCAGATTGTGAAGGAACGCAGATGTTCCCTCCTCTTTTTCCTTACACGTCTGCAAGACATTTGATGCTATCCAGGTCAGTggtctgaaaaataaaagtctGTTTTTCGCAGAGGAATGTAAAGGCATGGAGGACCGAGCAGCTTGATGAGCGCAGCTCCATGATGAGCGCGCTGCATCAGCTCCTAAAGAGGAAGTGAAGTCATCAGCCCACCCAAGCACGACCCTCACTATGACAGCTGTTTGGGATGAAGGGGCTGAAAAAAAGGCACGTTCCTCCACTTCTGCCCAGCTTAAGCCCTACCCACAAtccttctttctgttcttttttttcctcttagcTTTCATTGTGTTGAACATTTGTGTTCCATACTGTCTCTGATGCTTATTTATTGTACATGTGTTGGACAAAAATCGTGATCATGcataatactaaaaaaaaaaaaaaaacccaaaaaaaaaaaaaaaacatttaggcCCATCCTTCTAGCTGGTGCAAAATAACATATTAAGCATATCGCGAGCTGCTTTCCTGTTTGTGAGTGTTTGTGGTAGTTCCTTAGTAGCtgtttaagaagaaaaaaaatcccgtTGTCCTCAAAAAGGAGACAAAAGCTatctctcagagctgctgcttcAGTCTAACGCCGACCTTTTCTGAGAACTAGCATGTTACACGGAATGCTAACATTAATGTTTTGTACATGAGACGTACATAATTGTATTTGCACTGTCACAACGTTCCTTTCAGCATGCTTCTTTTTTCAAAGTTTCTCAGTAGAGAGCCTCACATCACTGACTCTGCAGTGCTTCTTTACGTATCTGtgatctttattttctttaaggaaaaaagggaaaaatagtATCCAGACCTGCTTTTGTTAGAAACGTTTCTTTGTCCTAAATGCGATAGCAAAAAAACGTCATACCTTTGCTTTGAATAGTTACAAACAGTGCATGCACATTACTGAATGTTGAAGTATATGTTCTTTTTTGTtcgttttataaaaaaaagagaaaaatcatataaaaaaaaaaaaaacatacgcTAAGAATCTAACTTTCCAAATGCAGAGGTGTAAACAGACAGCTTTAACACTGCAAAGCACCAGGTTACACAGTATTACAAAAAGAATTAACATGGAAGACAGCCAAAGACCGACACGAAGGACCAAAACCTGATTTTATcctatatttaaatgtaacaaaaacaaacaaaaaaaaaaaacaactaaaaacaaacatcaaacGCACCAttgattcttttgttttatcCGAGAGTTCATCAGGGGAAACCATTTTCGGTTTCCATTTTGAAACCTTTAACATTTTCCTGTCGAAAGCCAAGACCAGCCCTGCTCAGCCTGAACGGAGGAAAAGTGAAGTCACACTTGTACGTATGACATCATGGATGTGACCTAATGAGCAATAATAGAGACGGTGGCATGAATCCATTATATCAGAATTATAGTTAGTGAGGTTTTCCTTCAGCAGTCCCCTGGTTGGAAtattacccagaatgcaatggGGTGTTCAGACTTAATTCAGCTAAAGCAGCACTTATGACATATCTGTAATGCGTATCAGCCAAGATGATACAGTAAAGCCATGCAATCCATGATGATTAAGTTTAAAAGTGGGACGCTCTCCCCGAACCCATGGTGCTAAACGTCCCTCTAccttctccttttctcccttTCTGAGCTGAAACGATCCAAAAACTTTTCATTCACAACCAAGCTGTCtttttttgcaaaacacatCCAGTTAACAATACGGTCAGTGTAATCAGGGCAAACCtgataaaacaaacaagtaCTGTGGAAGTCTTAATGAACACCTAGGAAgcttctcttctcctccttcttctaaAATACCTGTTTTGctacaatgtttttttcctccgtggcagaaaaagaaaaaaaaaagaaaaaaaaccctcactcTACCTCTGACAGCATGTTACGAGCACCAGTCGCTGAGCAGACACTGGTCGAGTCAAACCAAATGGGCACGTGAGAAcaggactaaaaaaaaaatccaaagtaAAAAGCTCATACAGCTGCGAAACCATATCACTACTTGGTAACAATGCAGACCTCATAAAGAGAGAACTTAATGAATAGAAGaaatatgctgaaaaaaaaaaaactttttacgTTCATTTTTGCTTGTGTCACACACAGATCGCTTCTCTgatgaagaataaaaataattggaaaGTTCTGACTCCATTTGACATTCAAGAAGTGGTCAAGTGAGAAACGTGATCACGCCCCCTTACTCCCTTCTTCCTCCCTTTCCTATTTTGCTGTAAGAAGCTCTAGGCCACTTGTCAATGTTGTCTAGGTTCATGTTCTAAACACGAGGTGTGCTTAAATTAAAGAAGGCTGGTCATTTTGCGCATGCCTGTTTTTTGACAATATATAAAGGGAGATGTACATGCATTTTTCAATTTGTAAAGTGATTAAACGTCGAGCCTGACCGAATCGCTGAGTCGGGTGGGTAAAGGGAGGGGTGGGTTCGGGcacaaagaaatgaaaacttCTTTTTATTGTGAAGAAAAGCTCAAATAAATGAAGGTTATTGTGCAATACTTAATTGAAACATGAACCACAGGTTAACGGTAGACTGACACTGGGGGTGTGCTCTTTCATCACACTGTTTCAGTATGTTGTTGAGCTTTGGAGTCTACTATGTCAGAACTGtggtttcttgttttgttttatttctgtttcatttgtttttctttttttattttttgggggCTATAATCAATGGTCTGTCAGTCTGTGAATCTTTGCAGTATGATTCTGGTATTGTCGTACTCTttactgtgtaataaatatgttaatacCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477769 lncRNA downstream 65925 9143870 ~ 9161470 (-) True G402673
TU477770 lncRNA downstream 85572 9139017 ~ 9141823 (-) True G402674
TU477491 lncRNA downstream 612591 8612118 ~ 8614804 (-) True G402405
TU477221 lncRNA downstream 705351 8521358 ~ 8522044 (-) True G402142
TU477192 lncRNA downstream 719269 8449495 ~ 8508126 (-) True G402129
TU478003 lncRNA upstream 368336 9620130 ~ 9620599 (-) True G402892
TU478213 lncRNA upstream 478889 9730683 ~ 9731257 (-) True G403080
TU478200 lncRNA upstream 507851 9759645 ~ 9760497 (-) True G403072
TU478220 lncRNA upstream 512880 9764674 ~ 9764904 (-) True G403086
TU478269 lncRNA upstream 611239 9863033 ~ 9863314 (-) True G403134
XM_034301651.1 mRNA downstream 222064 8615005 ~ 9005331 (-) True adgrb2
XM_026942396.2 mRNA downstream 682535 8452086 ~ 8544860 (-) False col16a1
XM_026942443.2 mRNA upstream 135201 9386995 ~ 9416253 (-) True triqk
XM_026942344.2 mRNA upstream 329418 9581212 ~ 9582892 (-) True lratd2a
XM_026942383.2 mRNA upstream 334514 9586308 ~ 9612307 (-) True fam91a1
XM_026942183.2 mRNA upstream 375499 9627293 ~ 9669455 (-) False spire1a
XM_026942182.2 mRNA upstream 375499 9627293 ~ 9669455 (-) False spire1a
TU477767 other downstream 65925 9148511 ~ 9161470 (-) False G402673
TU476702 other downstream 1950751 7261340 ~ 7276644 (-) False fndc5b
XR_003404453.2 other downstream 2791347 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 2852905 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 3052135 6172988 ~ 6175260 (-) True G401205
XR_003404456.1 other upstream 125132 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 135208 9387002 ~ 9416207 (-) False triqk
XR_004577593.1 other upstream 1251495 10503289 ~ 10503361 (-) True LOC117596479
XR_003404458.1 other upstream 1251999 10503793 ~ 10503874 (-) True LOC113543917
XR_003404460.2 other upstream 1252394 10504188 ~ 10504325 (-) True LOC113543919

Expression Profile