RNA id: XM_034301499.1


Basic Information

Item Value
RNA id XM_034301499.1
length 3511
RNA type mRNA
GC content 0.48
exon number 19
gene id ppp1r10
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7788909 ~ 7798665 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTCTGAGGTAAGTGTTGCTGTGGGGGTGGTTTCCACAATTTTTTCCAGAAACGCTATTTAATTATAAGTTATTCATGTTTTTGGTCCTTGTTTTGTTTGAACTTTAATATTGAGAATTATGAGCGACTTCtgatattattttttcccccttattacatccatcatgttttttttttcttaatcgACGTTTGTTCATCTGCTTTGTTCCAGGTATCAATCTCACTGAATctcactgaagctcttggcgTCGAGGATTTTTCCAACTGTATGAAGATCAAAATCCccccaaaaatgttttttctactCGAGTAACGGACATTTGACTTCTACTTTTTTGCTCCAGATTATTCAAGAAGGAAAAGCTAGCATTCTAGCCACATCATTCCCGCCCATTAAGTCATTTTCAGTCAAAATGATATAGAGTCATGACAGTTTAAGCTGTCTAAAACTGTTCTGAAAATTGTTGCTGTTAAGCACAAAATATTATAGGTACCCGAGACGCAGAGGAGTTATAAATAGAGTGTGTATTGTACCGTGTAACGGAGGTCGATACTGAATTCAGAGActaaaaaaaacttcaacaaCACTTTTACGGgctgtAATGGCAGTGGGCCCAGTGGACCCCAGGGAGGTGCTGAAAGGAGTGGAGGCTCTACTGGGGAAGGATGGTGAGCTCCGAAGCCTGGAGGGCGTTGCCAAAGTATTCAGTCTCATGAAGGCCTCTCATAAAATGGTCAGCAGGTGCATGTATCTGAACATCTTACTGCAGACCAAGTCACATGACATCCTTAAtcgATTTATCCGTGTTGGTGGCTACAAGTTGCTGAACTCTTGGTTGACTTATTCTAAGACGACCACCAATACCCCAATGCTGCAGCTCATTCTGCTCACTCTGCAGAAACTGCCTCTCACGGTGGACCATCTCAAACAGAACAACACAGCGAAGTTGGTTAAGCATCTGAGCAAGAGCGGGGAGACGGAAGAGTTGAGAAAGCTCGCCTTGGTACTTGTGGATGGTTGGATGGCCATCATCCGCTCTCAGAGTGTTTCCAGTGGCGCCTCGCCTAACGACAAGAAACGAAAGAAGGAAGACATTAAAGTGCGTCCTGAGGTAAAGGCTGGGGAGAAAGGgacagaagaggagaagaaaagagaaaagccaAAGGCCCATGCACCCAGTCATGCGAAGATTCGCTCCACAGGTTTGGAGGTAGAGACTCCAACACCCGTCCCTACGAAAAAGGCCCCTGCAGTCCCCCAGCTTGGAGACAAATACAACATCAAACCTGCTGTCCTTAAGAGACCTAGCTCTGGTCTATCAGACGCTCCACCTGTGGAGAAAAAGTACAAGCCTCTTAACACCACCCCCAACTCAGCCAAAGAAATCAAAGTCAAGCTCATACCTCCACAACCTATGGAGAGCCTGGGCTTTCTGGATGCGCTTAATTCTGCTCCAGTGCCTGGAATCAAGATCAAGAAGAAGAAACCTAAGGCAGCCTCTCCTACCTCTAACAAGCCATGTCCGTTTGAAAGCAAGCCCCAGCCATACTCAAGCACGCAGACCAAGCCTTCTTCCCCTGAGGCTCCTGCGTCTCACACTCCTCCACACGAGCCCCAAGACCTGGAACAGCCAGGGACACCTGTCCCCACTGAGGACCCTGAGGCTATGGACACTGATAAGCCTAATGCACTTTCAGAGCCACGTGGAGAGGAAGAGAGTCTGACAAAGAaaggcaagaagaagaagagcgtTCGCTGGGCTGAGGAAGAGCAGCTCAAAGAATATTTTTACTTTGATCtggatgagacagagagagTAAATGTCAATAAGATTAAAGATTTTGGTGAAGCGGCCAAGCGGGAGCTGATGATGGACAGGCACACGTTCGAGATGGCCCGACGACTCTCACATGATGCCATGGAAGAGCGGGTGCCCTGGACACCCCCGCGACCTTTGACCTTGTCAGGCTGTCTGGTCACTCCAGGTTCCAACAGCAGTGAGAAGATGAcccagagggacagagagatggGCATCCTTCAGGAGATCTTCCTCAACAAGGAGAGTGTCCCAGACAGCCCACATGAGCCAGATCCAGAGCCTTATGAGCCAATGCCACCACGTCTCATTCCTCTGGATGAGGACTGTACGATGATGGAGGACAGCTACATGGAAACTGCTGATACTGCTGCATCGTGCCCTGCCCCTGCAACCCAGGAGGGCTCCAAGCTGCCTCCTGTTCTTGCTAATCTCATGGTCAGCCTGAACAGCAACCGCAGCCCCCAAGCTCAGAGCAATGCACCACCTCCCAACAATCCAGCTGTGAACGTCCAAGAACTCCTCAGCTCCATCATGGGTGCTCAGGGGTCTAACCAGTCCGCAGAGGACCTCATTAAGCAGCCTGATTTCTCTGACAAGATCAAACAACTTTTGGGATCTCTGCAGCAGAACCAGAACCAAAACCAGAACCAGCAGGGCAACGCTCCACCTATGAATGCAGGTCTGCTTGGCCACGGTCCTGGCATGAATGTGaacaacaacatgaacatgCCAATGCCCATGAACGGCGGTTACCCACCGAACAAGCCACCTGGCGGGCCTCATTTCGGTCACCCGCCCCCTCCTCATGGGCACGGACCTCCGTTCGGCGGAGGAGGTCCTCGCATGATGGGTCCTCCACCCGGACCTCAGGGCAGAGGAGGGGACAACGGAAACTACTGGGGAGACGACTCTATGCGGGGAGGACCACACCGGGGCGGACATTTCCACCgtgggagaggaagaggaggagaccAAGGATTCAGAGGACGGGGAGGACGAGGGGGACCGCGCGGAGGACACAACAACATGGGTGACATGTCCAAAAGACCTGTGTGTCGGCATTTCATGATGAAAGGGAACTGCAGATACGAAAACAACTGCGCTTTCTACCACCCAGGTGTGAACGGTCCTCCTCTACCCCCTCAGCACGGGCATTAACTCTGACCTCATCAGACTCTCTTCAACCCCGAACACTTACACTGGTTGTGATCCTGCCACTTACTTTCACTAGAGGGCAGTAGACTACATtttgaagactttttttttcttttttctttctttctttcttttttttttttttttaaacaagacaGTTTGATTCCTCTTCAGTGTTTACAGCTGCCTGATCAGAGACGATGAGATGCACCAACAGTTCGGCCAGACCTCGGCACGGTTTTTCCTCATCTTTTTCTatggaaaatggaaattaaaGCTTACTAATGACTTATTCATAAGAACAAGCTAAAGACTGCAGTGATTGTGTGTAAATAGGCTCTTCCTGTGTAAATACAGAAACTCAGTGTTAAGATCACTGGTgtagatattatatatatttttgtggtcATATGTACAACACTGATTTAAAACTGCTGAAGAATGTGCCACTCTTTGATGACCACTATTGCAGCTTACGTTTGATTTACACTGTTATGAGTTGTGCTTGCTTTGCTGGTacccatgattttttttt

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476828 lncRNA downstream 47152 7739349 ~ 7741757 (-) True G401813
TU476827 lncRNA downstream 49665 7738610 ~ 7739244 (-) True G401812
TU476826 lncRNA downstream 50467 7735631 ~ 7738442 (-) True G401811
TU476830 lncRNA downstream 80718 7707862 ~ 7708191 (-) True G401815
TU476768 lncRNA downstream 221162 7567533 ~ 7567747 (-) True G401758
TU476858 lncRNA upstream 17334 7815999 ~ 7827663 (-) True G401835
TU476884 lncRNA upstream 70738 7869403 ~ 7917693 (-) False tmem64
TU477149 lncRNA upstream 523491 8322156 ~ 8323077 (-) False G402090
TU477147 lncRNA upstream 523854 8322519 ~ 8324199 (-) True G402090
TU477180 lncRNA upstream 621722 8420387 ~ 8448303 (-) True G402120
XM_026942299.2 mRNA downstream 4848 7781915 ~ 7784061 (-) True agr2
XM_026942300.2 mRNA downstream 4972 7781915 ~ 7783937 (-) False agr2
XM_026942265.2 mRNA downstream 32848 7744824 ~ 7756061 (-) True khdrbs1b
XM_026942190.2 mRNA downstream 287696 7481825 ~ 7501213 (-) True kpna6
XM_034301501.1 mRNA downstream 311931 7467045 ~ 7476978 (-) True txlna
XM_026942276.2 mRNA upstream 6118 7804783 ~ 7819711 (-) False abcf1
XM_026942275.2 mRNA upstream 6118 7804783 ~ 7819710 (-) True abcf1
XM_034301608.1 mRNA upstream 45798 7844463 ~ 7858199 (-) False bag6l
XM_034301604.1 mRNA upstream 45798 7844463 ~ 7858199 (-) False bag6l
XM_034301607.1 mRNA upstream 45798 7844463 ~ 7858199 (-) False bag6l
TU476702 other downstream 512265 7261340 ~ 7276644 (-) False fndc5b
XR_003404453.2 other downstream 1352861 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 1414419 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 1613649 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 2199162 5587398 ~ 5589747 (-) True G400815
TU477767 other upstream 1349846 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 1428730 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 1578261 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 1588337 9387002 ~ 9416207 (-) False triqk
XR_004577593.1 other upstream 2704624 10503289 ~ 10503361 (-) True LOC117596479

Expression Profile