RNA id: XM_026942344.2


Basic Information

Item Value
RNA id XM_026942344.2
length 1681
RNA type mRNA
GC content 0.53
exon number 1
gene id lratd2a
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 9581212 ~ 9582892 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacagaccagacTGCTGCTGTGTTTATCATCCTTTTGCTCCTGGAAAGAAGTGTTTATGTTGCATTTCACTGGCTTATGTACAGTCCAGACTACAGAGCTGATCTTCCAGGAGTTGTCTTTATTCGTGTAACTTTTTGGAGGACTAAATGCAGATTTTtggtataaaacaaacaaatctttAAGTGATGATGACCGGATATCTCAAAGAATACGGcgtaatttatacatttaaccGAAAAAGTTATTTATGGGGCGTCTGTGCGCGCGTGTTCCGAATGAAATGTGGCTCGCGCGTGTCGGTATTTGGGCGCGCGGTTAACAGGTGCAGCGCGCGCTCCTAGTGCTCACTTTCCCCGGTATTACCGGACACCGGCTTTAGCGCTGATGGGCAACCACGTCGATAAACTCGCGCATCTCAGTTACGCCGAAGTGCCGACCGCGGAGCCGAGCGGCACGGACGCCGAGGACGACGGCGCGCGCATCGGCGTGTCCTACATCTTCTCCACGGACGACGACGACGCGCTGGCGGACGACAGGACGGACGAGAGGACGCCGCCGCCGCCGCACGAGCTCGAGTGCGCCGTCTACCACACGGCCGCGTGCGTGTACGAGAGGCGGGCGCGCGACTTGCGCGCGCACTCCGCAGAGACTCTGATGAGCAAGTGCGTGCCCGGGGACGTCCTGGAGTTCGTGGCCGCCGGCCAAAGTCCCCACTGGGCTGTGTACATCGGCGACTTTCAGGTGGTGCATCTGCACAGGGCGGAGGTGAAGTGCAGCTTCGTGATGGACGCGGGCCGCGGCAGACGCTGCCGGATTGTTAACCAGTTCTACAAGTACGAGCCGCTGAGCGCCGCCGCCGTGGTGCGAAACGCCACCGAGCACGTGGGCATGAAGGAGCGCGAGCTGAGCTGGAGGAACTCGGAGTGCTTCGCCGCCTGGTGCAAGTTTGGCAGGCGGGAGTTCAAAATGGGCGGAGAGCTGCGCATCGGGAAGCAGCCGTACAAGCTGAAGCTGCTGCTGGACGGCAAACAGGCGCACGAGCTCGAGTTTCAGAGTCTGGAGGACGCGATCATGGAGAGGAGACGCAGAGACAGGATGGACAAACCGCTGGTGCTGAATGAGCTGGAGGGACAGAGGTGAACTGCCACAGGACCACAGATATGCACCTTGTACTGTATGTTCAGTGCTTTAAAAACTGCACCACCTGTATGTGCCACATTGTTCTTGTTGAACTGACACCTAAAGTGTTTCCACAAGTTCTGAGTCCTGAGGGATGTAAATGAACAGTTAAGTAAATACCATATGCAAACAGGTCACTCAACAGCGCAGATCATGTGTAATGCTGCTCACGCGCTCTGACAACTGATCTGAGTTCATGTAGAGGACACCGGGGATGATTGTAACACTTTTTCTTTAGTTTCAGTCCATTTCCGTAAAAATTCCTTGATTACAAAGGTCCGGGTAAGATGATGGCGACAACAGTTACCTGTTAATATGTAACCATTAATGTTTAAGGATACAATTCAAAGTGGTTATGTTTCTtgattgcttttgtttttttcataagtGGGAgttcatgttaccacttttgaccaataccacagactctgaacagatgagacacatCTGTTTTGAATATGATGTggagaaaataaatgcacaccTCCCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477769 lncRNA downstream 419742 9143870 ~ 9161470 (-) True G402673
TU477770 lncRNA downstream 439389 9139017 ~ 9141823 (-) True G402674
TU477491 lncRNA downstream 966408 8612118 ~ 8614804 (-) True G402405
TU477221 lncRNA downstream 1059168 8521358 ~ 8522044 (-) True G402142
TU477192 lncRNA downstream 1073086 8449495 ~ 8508126 (-) True G402129
TU478003 lncRNA upstream 37238 9620130 ~ 9620599 (-) True G402892
TU478213 lncRNA upstream 147791 9730683 ~ 9731257 (-) True G403080
TU478200 lncRNA upstream 176753 9759645 ~ 9760497 (-) True G403072
TU478220 lncRNA upstream 181782 9764674 ~ 9764904 (-) True G403086
TU478269 lncRNA upstream 280141 9863033 ~ 9863314 (-) True G403134
XM_026942443.2 mRNA downstream 164959 9386995 ~ 9416253 (-) True triqk
XM_034301689.1 mRNA downstream 296719 9227395 ~ 9284493 (-) True runx1t1
XM_034301690.1 mRNA downstream 311812 9227395 ~ 9269400 (-) False runx1t1
XM_026942283.2 mRNA downstream 329418 9227395 ~ 9251794 (-) False runx1t1
XM_034301688.1 mRNA downstream 329418 9227395 ~ 9251794 (-) False runx1t1
XM_026942383.2 mRNA upstream 3416 9586308 ~ 9612307 (-) True fam91a1
XM_026942183.2 mRNA upstream 44401 9627293 ~ 9669455 (-) False spire1a
XM_026942182.2 mRNA upstream 44401 9627293 ~ 9669455 (-) False spire1a
XM_026942181.2 mRNA upstream 44401 9627293 ~ 9669455 (-) False spire1a
XM_026942180.2 mRNA upstream 44401 9627293 ~ 9669455 (-) False spire1a
TU477891 other downstream 165005 9387002 ~ 9416207 (-) False triqk
XR_003404456.1 other downstream 204173 9376926 ~ 9377039 (-) True LOC113543915
XR_004577570.1 other downstream 329418 9227395 ~ 9251794 (-) False runx1t1
TU477767 other downstream 419742 9148511 ~ 9161470 (-) False G402673
TU476702 other downstream 2304568 7261340 ~ 7276644 (-) False fndc5b
XR_004577593.1 other upstream 920397 10503289 ~ 10503361 (-) True LOC117596479
XR_003404458.1 other upstream 920901 10503793 ~ 10503874 (-) True LOC113543917
XR_003404460.2 other upstream 921296 10504188 ~ 10504325 (-) True LOC113543919
XR_003404459.1 other upstream 922156 10505048 ~ 10505185 (-) True LOC113543918
trnaa-ugc_19 other upstream 1857772 11440664 ~ 11440735 (-) True trnaa-ugc_19

Expression Profile