RNA id: XM_026942348.2


Basic Information

Item Value
RNA id XM_026942348.2
length 4112
RNA type mRNA
GC content 0.45
exon number 9
gene id glcci1a
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5391522 ~ 5427603 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTGTTTGTAGTTGCCGCTATAGTTTCTGTCACTTGCAGCAACTTAAATGCTGGAAGCAAGTCGACCCTGAGAGATTTCTTTTCTAtgcacactttatttattttattttatttccatctaGCTCGCACCAAGAACTTTAGGAtcaatattttctatttataaCTTCTTACTaacttttttgttgctgttgttcaaGCTGGCAGTGAAGAATGCGTAAGAAAGAGGAAACAGACAGGCTTCATTAGTGAAAACATGCAGAAATAACTTAAGcctaactttttttatttatttattggagttTCGAATTTTTTGGACTATTAATAATCTATTTCTCAGCCTATATTTTTCCAAGCGGAACTGAAACTGCAGGATCCCAtcatgtcatcatcatcatcttcatcatcatcatcatcatcatcatgcaaCTCGACTCATcatcaacagcaacagcaacagcgGGCTAAAGGCAGCACGGGATCCCCCaccatctcatcatcatcatcatcatcatcaccatcatcatcatcatcatcagtcgtTAACGGCGCGAGCCGGTTGCTGCAGCCAGTCCGTGCCACGGTGCCGTACCAGCTGCTGCGCGGGAGCCGCCGctcctctccctcttcctcctcttcctcctcttcctcgtgTGCGTCAGCCGGGGGCGACGTCGCAGCACCGAGAGCGCCCGGTGCCGCCGCCGCGAGCCCGACGCGAGTAGTGACGCCGCTCGCGCGCCCGCCTGGAAACGGAAGCGGCCACGGCTCCGCGGACTGCGCCGCCGGGCTGATCGCGCGCTCCCCGCCGCCTGACCGCAAGGGCTCACCGGAGCGGCGCCCCGATTCACCTGCTTTCCGAGTTGAAAGGTCAAAAGGCCAGCAGGTGTGGATCAGACGCACCTCCTCTCTAGGCGCCATCACCGTCCCCTACCTGACCGGCCAGTGGCCCCGTGACCCCTACGTGCTCTACCCATCGTGCATGAAAGATAAATCCACACAGACTCCTGGATGCTGGAGTGAAGACTCATCAGAGGGAGAGCTGAGGAACACACACCAGCGCTCGGCGTCCTGGGGCTGCGCCGACCAGCTTAAAGAGATCGCTAAGCTCCGCCTGCAGCTCCAGCGCACTAAGCAGGGAGGAAGTCGCCATATTAAGGACGGTAGGGAGCTTCTGTCTCCCCTCCACTGCTGCATcttcaacaccacacacactaccagcAGCATGTCCAGCCAAGCCACGTCTCCCATGTCGAAGCCGGCACAGATGACCCTGCCCAACATCACTGTACCGAAACCGTCCATCTCACGAGTGCCCAGCAGCATGGAAGGCATCAACCACGAGCTGGAGAAAGTCTTTATTAAAGATAACGGAGAGAAGGAAGAGCTGAAGGCATTGGAGGTGCCTGATGGACGCCGTGCCCCATTTCCTCCTCAGCAGCGGAGTAGCAGTACGTGTGGTTTGGACTCTCAGACCCCGGCAGTACTCGGCCGCTCCAGCAGCTGCTCCAGCGCATCACCGTGTCCGGCAGGATCACACGACGGCAGCCCATACTCCACTGATGAGCTCCTCGACGACCGAGACAAAGACAGTGGCAGCAGCTCTCCTCTCCCCAAGTTTGCCTCTTCACCCAAACCCAACAACAGCTACATGTTCAAGCGAGAGCCTCCCGAAGGCTGCGAGAAGATCAAAGTGTTCGAAGAAACGACGTCGAGACAGTCCTCTACCACCCCCCTCTTCTCCTGCCCCGACAAAAACAAGGTGAACTTCAACCCCACTGGTTCGGCTTTCTGCCCTGTCAGAATACCCGGCTCTGTGCTTCAGCACTCAGCCTCCCAAGCTGAcgaagaggaggagggaggacaCCCAGGTGTTGTGACCTCCTCGGCCATGTACGCCCTGCTCCACcccactcaggtctccatcagcaCCAGCACAGACGATCCGCCAGAATCAGACGCCGCGTCTCCGTCCCAACAAGAGGcaccacacacaaactcagaaCTGTGCAGTTAGCTCGATTTGCCCAGAGCTGGTCTCTGTGGCACTTTGTGCCCTTCATAGGTTGAATAGATGCccccttttcctctctttctggACTGAAACTCCACCGTCTGCATGTCATAGTGACACACAAGGTTCCGAACACAAGAATTACGCTCCAGTTCAATCCGTCGTCACATCCGCCCCGTTTTCTTACGCACTGTTACTGACAGGGACTAAAAAGCTAAAAAGGCTATAGTGTGCAAGTGTGCAGTCTGTTTTTGGAGCAGCACCACAGAAGCCAgtaaagattatatatataataatacatatatatatatatctatatatgtagtattattattaatgttaaaataaagagTGTGAGGGTTTTATGGACcacaaaatatgcaaatgtaggTTCAATGTTAACcttaaaggaaagaaagaaaaaagagtgagctgtcatttttttctacagaagTCCCAAGAggccatactttttttttttttttgactctgtCACATTATCTCGAGATCACAATCTGTTTTCTTGCATAAAGATCATCCTTTTTGATTAGCTTTATTCTATAAGCCTAAACATTCAGTTTATTGTCTCAGTGAAACCACTTTCACAGGAAAAAATAAGTCATtatctcaagaaaaaaaagctgtggaTAAAAGTTGAAGAATCCTTGTTCAACTGCTTTTTCCCAGCACCTACCAGGTTAGGGAACAAACCACCAAGAAGTTATGCTAGCTGTGCTTTCAGCCTTACACATCAGCCTTACATGTGACGTGCAATCGAGCCTAGGTGAGGCAGGGATATCAGCCTTAGTTTTATGATTGCAATTGAAAAAAGGTTTTATGAAATATCCTGGCCATCTAACTGACATTAGCAGTGAAGGTTTGCAAATTTTATACATACAGGTTTAAACAATCTTCTCAGAAAtcttgtcaggttagctcagATTAGCAattattaaattacagtaaagaCATTAATGATTATGCCctaaaatcctgtcagaaatcctcTCAGATTATCTTTTATTACTgtgttagcagtgaagattatgaacaATAATGATTAAGACTTACAATTCCTGTCAGAattcctgtcaggttagctaaTATTAACTAGCTGGATTGTGTTAGCAATgaaaattatgattattaatgatCATGACTTAAAACCCTGTCAGAAATCCTTTCAGAATAGCTTATTTTTGTGAGCTAGCTAATCTTGGAAGGGAAGATGataaacattaacaataatGACCTAAAAATCCTTTCAGATATCCTGTCAGGCTAACCCGGTAAGGTAGCTGGCTAGAGTTAGCTGTGATTATGAAcacataaaatgatttaaaattcaTGTCAGGTTAGCCCATGTTAGCTGGCTATgaaatgatgagtattaatggtTATGATCTAAAATCCTTTCAGTTATCCTGGTAGCTCATATTAGCTAGCTGGTTGGAGGTAGCaatgaaaatgataaacatttataaataagatttaaaaatcctgtcagaaattcTGTCAAattagctaatgctagctagctgactagtgTTAACAgtgaatattataaacatttacaaatatgatttaaaaatcctgtcagaaatcctcTCAGGTTAGCTCTTGCCTacaaagtggatttttttttttttacattttgttttgagAAAAACAAATCGTAATTTCGAGTTAATAAGGTAGTGATATAATAATCCACGGCCTCTTGGGACTTCTGGGTTTTGCTACTATATTCTCATCTTATTTATACAGTTTGGCATTGAGTTCTGCTCACACTTTTTGGATTCGCTTTTTTGGtgtgattcattttctcactgATGTGGATCTGAATGATTGCACAGCTTCGCTTTCTGTTGGGTGAGTGAAATTCAAGCAAATAACTGCTTAACTTAAGCGGGATAACTCCTTTTTCAGCTACAACACAGAAATGATTGCGTTTAGTGGAGAAAAAAACGTTACATCGAAAGGCTTCAGGAAGGGTTTAATAGGGTCGGATGCATGTATCTGAAATTGATCATATATGTTGACGCTTACAGTGTcatgtctgttttctttttttttaacatccacAGTATGAATAAGCTC

Function

GO:

id name namespace
GO:0003094 glomerular filtration biological_process
GO:0072015 glomerular visceral epithelial cell development biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475475 lncRNA downstream 10585 5371072 ~ 5380937 (-) True G400676
TU475417 lncRNA downstream 112208 5278903 ~ 5279314 (-) True G400622
XR_003404451.2 lncRNA downstream 149470 5240099 ~ 5242052 (-) True LOC113543905
TU475347 lncRNA downstream 254881 5128235 ~ 5136641 (-) False LOC113543870
TU475266 lncRNA downstream 355600 5030859 ~ 5035922 (-) True G400501
TU475654 lncRNA upstream 155952 5583555 ~ 5587381 (-) True G400826
TU475747 lncRNA upstream 383741 5811344 ~ 5812012 (-) True G400913
TU475958 lncRNA upstream 479544 5907147 ~ 5971174 (-) True G401106
TU476060 lncRNA upstream 593951 6021554 ~ 6021765 (-) True G401196
TU476110 lncRNA upstream 669376 6096979 ~ 6187263 (-) True G401230
XM_026942261.2 mRNA downstream 10096 5319003 ~ 5381426 (-) False rims3
XM_026942259.2 mRNA downstream 10096 5319003 ~ 5381426 (-) True rims3
XM_026942339.2 mRNA downstream 73678 5289830 ~ 5317844 (-) False ptp4a3a
XM_026942341.2 mRNA downstream 81279 5289830 ~ 5310243 (-) True ptp4a3a
XM_026942435.2 mRNA downstream 105914 5281297 ~ 5285608 (-) True LOC113543899
XM_026942328.2 mRNA upstream 1358 5428961 ~ 5442861 (-) True umad1
XM_026942379.2 mRNA upstream 112773 5540376 ~ 5547849 (-) True asns
XM_026942378.2 mRNA upstream 113862 5541465 ~ 5549658 (-) False asns
XM_026942103.2 mRNA upstream 122775 5550378 ~ 5559011 (-) True bloc1s4
XM_026942423.2 mRNA upstream 132377 5559980 ~ 5598363 (-) True pard6gb
XR_004577542.1 other downstream 383061 4961102 ~ 5008461 (-) False sept7a
XR_003403516.2 other downstream 1258600 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 2029696 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 2030568 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 2080090 3311361 ~ 3311432 (-) True trnae-cuc_42
TU475643 other upstream 159795 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 745385 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 944047 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 1008384 6435987 ~ 6436048 (-) True LOC113543912
TU476702 other upstream 1833737 7261340 ~ 7276644 (-) False fndc5b

Expression Profile