RNA id: XM_026942360.2


Basic Information

Item Value
RNA id XM_026942360.2
length 981
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC113543858
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11799496 ~ 11809781 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtatatatagtgaCCTGATTGCTagagaacacacactcaaaggaggagagatagagacaaCCAGTACCTAAGAAGTGAGtattCTTGGGACATCTATCCAGACATGAAGATCCTTGTGGTTattgctgttgctgtttttactgGCTGCCAAGCCAGTGTTATACGGCAAGATGAGGCCAAACCTAGTATAGAGATGGTAAAAGATGCATTCTGGGATTATGTGTCCAAGGCAACACTGACAACTGAAGAAATCCTGCAGAAGATTAAGGAGTCTGAAATGGGGCAAGAAGTCAACACTAGGATCTCTGAGAGTGGAGATGCCATCAACCAGTATGCTGTGGCCGTTAGTGGTCAGGTGACTCCTCTGACTCAGGAGCTGCTGGCTAAGATGTCCCAGGAGGCTGAGCAGCTGAAGGCACGTCTACAGCAGGACATTAGCTCTGTCAAGACCCAGCTGGAACCGTACATTGAGGAGTTGACGTCAGATATCCAGCAGCAGGTGGAACAGTGGAAGAAGGACATGGCTCCCTATACAGATGCTCAGCAATCTGAGGCTCTAAGAGCTGCTCTGCTCCAGAAGAacaaagagctgaaaatgagTCTGGAGAAGAGTATGAGTGAGCTTCAGGCCAAGCTGGGACCCCAAGCAGATGAGCTGGACAAACATCTGCAGGACTTCCAGAAGAACATAGCTCTGTTTGTTCAGAACAGTGAGAAGGTGCCCCAGACATTGGATCCGTATGCCCAAGACCTGAAGGCCCAACTCACTGCGCTGTGGGAATCATTtaccaaaaacatccagtaatcAGACTTGATCTgatgttttcatatttacaatCTTGCAGTGGAGTAACAGAGAACTTTTAAATGGCGTAAATGACTGTTGATTCTAGtagcttttccttttttattttctttttataatttatgtttGTATTCAAGGacaatgcaataaaatatactatttcagaagaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479539 lncRNA downstream 9331 11789319 ~ 11790165 (-) False si:ch73-347e22.4
TU479385 lncRNA downstream 33729 11763111 ~ 11765767 (-) True G404060
TU479297 lncRNA downstream 103305 11691704 ~ 11696191 (-) False G403981
TU479299 lncRNA downstream 111123 11671667 ~ 11688373 (-) True G403981
TU479573 lncRNA upstream 20312 11821050 ~ 11821426 (-) True G404198
TU479616 lncRNA upstream 170004 11970742 ~ 11970964 (-) True G404235
TU479622 lncRNA upstream 196332 11997070 ~ 11997470 (-) True G404241
TU479624 lncRNA upstream 199528 12000266 ~ 12000510 (-) True G404243
TU479664 lncRNA upstream 324719 12125457 ~ 12125840 (-) True G404282
XM_026942107.2 mRNA downstream 5079 11792220 ~ 11794417 (-) True apoea
XM_026942200.2 mRNA downstream 9317 11778027 ~ 11790179 (-) True si:ch73-347e22.4
XM_034301565.1 mRNA downstream 9568 11778027 ~ 11789928 (-) False si:ch73-347e22.4
XM_026942199.2 mRNA downstream 9568 11778027 ~ 11789928 (-) False si:ch73-347e22.4
XM_034301721.1 mRNA downstream 67023 11723577 ~ 11732473 (-) True LOC117596452
XM_026928288.2 mRNA upstream 31468 11832206 ~ 11842945 (-) True tomm40l
XM_034301426.1 mRNA upstream 31468 11832206 ~ 11842609 (-) False tomm40l
XM_026928125.2 mRNA upstream 43815 11844553 ~ 11863767 (-) False LOC113535038
XM_026928124.2 mRNA upstream 43815 11844553 ~ 11863767 (-) False LOC113535038
XM_026928123.2 mRNA upstream 43815 11844553 ~ 11863767 (-) False LOC113535038
TU479536 other downstream 20293 11777369 ~ 11779203 (-) False si:ch73-347e22.4
trnap-ugg_24 other downstream 357910 11441515 ~ 11441586 (-) True trnap-ugg_24
trnaa-ugc_19 other downstream 358761 11440664 ~ 11440735 (-) True trnaa-ugc_19
XR_003404459.1 other downstream 1294311 10505048 ~ 10505185 (-) True LOC113543918
XR_003404460.2 other downstream 1295171 10504188 ~ 10504325 (-) True LOC113543919
trnay-gua_12 other upstream 9645 11810383 ~ 11810470 (-) True trnay-gua_12
trnay-gua_13 other upstream 11139 11811877 ~ 11811964 (-) True trnay-gua_13
trnay-gua_14 other upstream 12630 11813368 ~ 11813455 (-) True trnay-gua_14
trnay-gua_15 other upstream 14147 11814885 ~ 11814972 (-) True trnay-gua_15
trnay-gua_16 other upstream 15645 11816383 ~ 11816470 (-) True trnay-gua_16

Expression Profile