RNA id: XM_026942378.2


Basic Information

Item Value
RNA id XM_026942378.2
length 1798
RNA type mRNA
GC content 0.54
exon number 12
gene id asns
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5540376 ~ 5549658 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACATCCGCGGTTGAATTTCATCATGCGCACTTCTGGCTCGAGCGTGTCCGCTCCAGGCCACCGTAGCGGAGActcatctctctcatcctgGGTAAAGCAGCAGAAACACAATGTGTGGTATATGGGCCTTGTTTGGCAGTGATGAGTGCCTGTCAGTTCAGTGCACCTGTGCCATGAAGATCGCACATAGGGGTCCGGATGCTTTCCGCTTCGAAAATGTCAACGGTTTCACCAACTGCTGCTTCGGCTTCCACCGCTTGGCCATCGTGGACCAGCTGTACGGGATGCAGCCGCTACGCATTAAGCGCTTCCCTTACCTCTGGCTCTGTTACAATGGCGAAATCTACAACCACCATCGGCTGAAAAAGCACTTTGAGTTCGAGCACCAGACCAAAGTGGACGGAGAGATCATCCTCCACCTGTACGACCGCTTCGGCGTCGAGAAGATGGCGTCGCTGCTGGACGGAGTGTTCGCCTTCGTGCTGCTGGACACGGCCAATAGGAAAGTTTTCCTGGGGAGAGACACGTACGGCGTCAGGCCTTTGTTCAGGATGCTGACTGAAGATGGCTTCCTCGCCGTGTGTTCAGAGGCCAAAGGCTTGACCCAGATCATGCACTCCATGTCGAACCCTGTGAAGATCACCCCATTCCTACCAGGCCACTTCGAGGTGTTTGACCTGAAGCTGAATGGAAAGGTGGAGTCTGTTCAGCTGGACCGGTTCCACTGCTGCACCGAAGAGCCCAAACATGCTGCCTACGACAACGTCGAGAACCTTGGCACGGGTTTCGCTCTGGAAACAGTAAAGAGCAACATCAGGATCCTGTTTGAAAACGCTGTGAAGAAGCGCCTCATGGCCCACAGGAGGATCGGCTGCCTCCTGTCAGGTGGTCTTGACTCCAGCCTCGTCGCTGCTATGCTTGTTAAGCTAGCCACGGAGGAGCAGCTGCAGTATCCCATTCAGACGTTTTCAATCGGGGCAGAAGACAGTCCAGACGTTATAGCTGCACGCAAGGTTGCAGCTCACATAGGCAGTGAGCACCACGAGGTGAATTTCACCCCAGAGGAGGGCATCCGCGTGCTGGAGGAAGTTATTTTCCACTTGGAGTGTTACGACATCACCACAGTGCGCGCGTCAGTTGGCATGTATCTGATCTCTAAATACATCCGAGAGAAGACGGACAGCGTGGTGATTTTCTCTGGTGAGGGATCTGATGAACTGACGCAGGGCTACATCTACTTCCATAAGGCTCCATCGGCCAAAGCTGGAGCGGAGGAAAGTGTGCGTCTGTTGAAGGAGCTTTATCTGTTCGACGCGCTGAGAGCAGACAGGACGACAGCCGCACACGGGTTGGAGCTGAGAGTGCCCTTCCTGGACCACAGGTTCACCGCATACTACCTCTCTCTGCCTGAGGAGCTGAGGACGCCCAAGGATGGCGTGGAGAAGCATCTTCTGAGGGAAGCGTTCAAAGGACTGAATCTGATTCCTGACGAGATTCTGTGGAGACGCAAAGAGGCTTTCAGTGACGGACTGACTTCCGTGAAGAAGTCCTGGTACATGAGCTTGCAGGAGCACATCGAGTCTGAGGTGAACGACACCGAGTTAGAGAAAGCGGCCGCGTTGTTCCCCTACAACCCTCCCGCTACCAAAGAAGGCTTCTTCTTCCGGCAGATCTTCGAGAAGCTTTACCCGGGACGCTCCGAATGGACGCCGCATTACTGGATGCCTCGATGGATCAAAGCTACAGACCCCTCGGCCAGAACCCTGTCCATTTACAAACCAGACAAAGATCAGTAA

Function

GO:

id name namespace
GO:0070981 L-asparagine biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475475 lncRNA downstream 160528 5371072 ~ 5380937 (-) True G400676
TU475417 lncRNA downstream 262151 5278903 ~ 5279314 (-) True G400622
XR_003404451.2 lncRNA downstream 299413 5240099 ~ 5242052 (-) True LOC113543905
TU475347 lncRNA downstream 404824 5128235 ~ 5136641 (-) False LOC113543870
TU475266 lncRNA downstream 505543 5030859 ~ 5035922 (-) True G400501
TU475654 lncRNA upstream 33897 5583555 ~ 5587381 (-) True G400826
TU475747 lncRNA upstream 261686 5811344 ~ 5812012 (-) True G400913
TU475958 lncRNA upstream 357489 5907147 ~ 5971174 (-) True G401106
TU476060 lncRNA upstream 471896 6021554 ~ 6021765 (-) True G401196
TU476110 lncRNA upstream 547321 6096979 ~ 6187263 (-) True G401230
XM_026942328.2 mRNA downstream 98604 5428961 ~ 5442861 (-) True umad1
XM_026942348.2 mRNA downstream 113862 5391522 ~ 5427603 (-) True glcci1a
XM_026942261.2 mRNA downstream 160039 5319003 ~ 5381426 (-) False rims3
XM_026942259.2 mRNA downstream 160039 5319003 ~ 5381426 (-) True rims3
XM_026942341.2 mRNA downstream 231222 5289830 ~ 5310243 (-) True ptp4a3a
XM_026942103.2 mRNA upstream 720 5550378 ~ 5559011 (-) True bloc1s4
XM_026942423.2 mRNA upstream 10322 5559980 ~ 5598363 (-) True pard6gb
XM_026942333.2 mRNA upstream 264246 5813904 ~ 5846278 (-) True dtnbp1b
XM_026942332.2 mRNA upstream 264246 5813904 ~ 5835037 (-) False dtnbp1b
XM_026942331.2 mRNA upstream 264246 5813904 ~ 5835037 (-) False dtnbp1b
XR_004577542.1 other downstream 533004 4961102 ~ 5008461 (-) False sept7a
XR_003403516.2 other downstream 1408543 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 2179639 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 2180511 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 2230033 3311361 ~ 3311432 (-) True trnae-cuc_42
TU475643 other upstream 37740 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 623330 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 821992 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 886329 6435987 ~ 6436048 (-) True LOC113543912
TU476702 other upstream 1711682 7261340 ~ 7276644 (-) False fndc5b

Expression Profile