RNA id: XM_026942392.2


Basic Information

Item Value
RNA id XM_026942392.2
length 7449
RNA type mRNA
GC content 0.49
exon number 69
gene id col16a1
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 8452086 ~ 8544860 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttaaccacagtgCGGGGAGGGGAGACGATAGAAGTTGGACAAGAAGGATTCCTAGGCTCTAACTTTCCCCTTCCCCCGTTAAAAGAACTAGGGGGAAAGAGCGAAAAAGTGGATTgcaccagaaaaaaaagaaagagaacaaaacaataaaagaaaaacggTTTCAGATTCCGGACGCATCGGCTTTTCTGTGGATTAATGTTGTCCTTACTGAGTGGATTTATCGATTGCTTGTAGGTAGGAGTTGAAGGAGGGAGCCATGAGGATCATATTGTGCTCCGTTGTGCTGCTGACCATCGGGTCAGGTCATGGAGTTCAACTGGAGACTGCTGAAGCAGGTAAGCAGTGTCCATCTATACAGGTTGAAGACTGGAAGTTTCCTCAGACAGCTAGACACAACATTACAGGTTTCAATCTGGTGCGGCGCTTTTCCCTGATGAAGAACAGTGATGTGAAGAAGATACGTAACCCGCGAGGGCCTGTCATCCTACGCCTGGGAAAAGTTCGCCTCATCCAGCCCACTGATCAAGTGTTTCCACATGGACTGCCTGAGGAGTTCACACTGGTCTTCACCCTGCTTTTGAAAGCCAAGGCTCTGAGGGATAACATCTACCTTTTCCAGATATCTGATGAGCAAGGGTACCCACAGCTCTCGCTGGACCTGAATGGGCCGGAGGGCATGCTGGCACTGCGGACATCCACTGCAGATCAGGATGCCTcgacagcagggtgtgtgttcgATGGAGAAGGTGTGGAGTCTCTGATGGACCTGCGCTGGCACAAAGTAGCTCTGAGTGTGCAGAAGAGCGCGGCATCGCTTCACGTAGATTGCAACTCTATTGAGACGAAGCCGCTGGAGCCTCGGGGCCATGTCCCAATTACtggacacacactgatgtttatGAGGGCCAGCAATGCCGCTCCTGTCGAGatGGACATTCAGCAGGTGATGGTGTACTGCGACCCAACTTTGGCCATCCAGGAAGCTTGCTGTGAAATTCCAGGAGCTCGGTGCCCCCCAGATGCCCCTAAGAGCCGTCGAGCAGCAGAGAACCTGGTGGAGATTCTTCCCAACCCTTTCAGCCAGCCTATCCATGGATCAAAAGACTTGGCGGAAAAATGCGCAGGCTGTGTGTTGATCACTGAGGATCAAAATCTCGTCCAGGAAGGGGAAGCGGGTCAGCGTGGCctgaaaggagaaaaaggagagcGGGGTCTGGACTGCACTGGAGCTGGAGTTCCTGGTCGATGTCCGGAAGGAGTGAAGGGGGAAAAAGGAGAGCGAGGAGAACCGGGTCTGTCTGGAAACTGGGAGGCGGCTTTAGGAATTAAGGGAGATAAAGGACAGAAGGGTGAGGTCGGATCCCCAGGTCTCACTGGAAGTCCAGGGAAAGATGGTCGTGCTGGATCTATTTGTGTTGTAGGTCCTAAAGGGCAGAAGGGAAGCACAGGTTCTGTTGGTCCAGAGGGGCTTGCAGGAGAACCAGGCCTACCAGGACCTCCTGGACCTCCTGGCATTGGCATACCAGGAAAACCTGGGAGCCCAGGCCTACCTGGATCAAAGGGAGATAAAGGGGATTCTGGGATACCTGGGAAGAATGGGACGACGGGTGATCCTGGTCCAAGAGGTCCAGGTGGCCCCAAAGGTGAAAAGGGTGAACCATGTGAAGTTTGTCCAGTGCTGCCAAAGGATTTGAGTGAAACCACAATCCTTCAGGGGAAGCCTGGTCCCAAAGGAGAACCCGGAGCACCAGGCAAAGGAGAGCAGGGTTTGCCTGGCCCTTCAGGGAAAGACGGAAAAGCAGGAGAAAAGGGAGAGCGAGGCTTAGAAGGGGCCAAAGGGGAGAAGGGCGAGTCGTGTGGTATGTGCCCCACGAATGGTGGTATTTTCGGAGCTCAGAATCTACAGATGAAGGGGGGAAAAGGGGAGGCAGGAATTGGACAGAAGGGAGAACAGggAGAACCAGGTCAAATTGGCCTGCCTGGACTCAAAGGGGAAAAGgGCGATGCAGGAGGCAAAGGCAGTGAGGGGAAAACTGGCAAGCCTGGACTAAAAGGTCCAATTGGCAAGGATGGACAGAAAGGAGAAAAGGGAGATGCTGGTCAGTCAGGTTTACCAGGGACCAAAGGTGAAAAGGGAGActcatgtggtgtgtgttcaaaTTCCCCGTCTGAAGTGAAAGAAGGCAAGATACTGTTTAAAGTTCCAGGAGAATCCGAGGAGGGCAAAGTGGGACCTCCAGGCCCCCAAGGACTGAAAGGAGATAAAGGTGAGCAGGGTTTGCAGGGAGAGCCAGGACTGGCTGGATCACAAGGATCCCCGGGACTGCCAGGGGAACCCGGGAGAGACGGACTCAAAGGACAGAAGGGCGACGCCTGTGACAGCTGTCCGACACTTCCTGTGGCTTTGGATGATGTTGTGGGCTTACCTGGACCCAAGGGAGAGAAGGGAGAGGCAGGTGTACCTGGCGTGGGGAAAGCCGGGAAGAAAGGCGAACAAGGGCTAAGAGGTATTCCTGGACCTGCTGGTCCAGTAGGACCTCCAGGACCTTCTGGGCTTATAGGACCAGTTGGACAAAAGGGTTCGAAAGGAGAAGTGGGGCCTGCGGGTCCTCAGGGACCGATTGGCATCAGCATAACAGGACCTTCGGGTAGAGACGGTTTTCCTGGCCCTCAAGGAATCCCAGGCGCAGATGGGATACCAGGAGCCATCGGACCTAAGGGTGACAAGGGAGAACCAGGAGAGTGCAACTGTGTGCCTTATACGATTCCACAACCTGGAAGACCTGGTGTCCCTGGTGGTGGTGTCTCGGTCCCGTGGCAGCCTGGTCCTCAGGGGCCTCCAGGACCTCCAGGCCCCCCAGGACCTCCAGGACCCCAAGGATTTACAGGGTTCCCAGGCCCACAGGGTCTCCCTGGCAATGATGGCTTACCAGGGAAACCGGGTCCGCCCGGCCAAGCAATTCCAGTAGATACTGACTCTTCCAGTGACAAAAAGATGGACTGTGGTGACTGTTCCAAAGGCCTGCCAGGCGTGCCCGGTGTACCTGACACTAAGCCTGAGAAGAGAGATCATGGCAAACCTGGTGTTATTTCTTTAGATGGATGTGAGAAGtgtcttGAGAGGCTGCAGGAAGAGGAACCGCAGAGgcctAGTACCAACAACGGCCCTTGCCCAGGTGTGCCAGGATCACCAGGCATCCCAGGTCAACCCGGGATTAAAGGAGATGCGGGGGACAGGGGTGAAAGGGGTCTTGCTGGTCTTCCTGGAACCCCAgGTAATATTGGTTTCCCTGGTCCTCCAGGCCCCCCTGGACTCCCTGGTCAGCAAGGTGAGAGAGGACAACATGGACCACCAGGTCTGAAAGGAGAACAGggtCCGCCTGGAACTCCTGGATACCCAGGAACCATGGGACCACCTGGACTTCCAGGACTTAAAGGAGAGCGAGGAAGCCCAGGCACTGCTGGGCAGAAAGGAGAATCAGGCCCACCAGGATTCCCAGGTCATCAAGGACCACAAGGCCCTGCTGGTCCCAAAGGAGAAGTGGGAATAACAGGACCCATTGGACCAAAGGGAGATCAGGGCTTCTCAGGACCACCAGGATTTCCAGGACAACAGGGAACACCAGGAATCCCAGGAAAAATCGGTCCACCCGGACCACCAGGACCAAAGGCAGATTCGgGGAGTCCAGGACTTCAGGGTCCACAGGGACCTACAGGCCCTCCGGGATCTCCTGGAGGCCCAGGATTGCAGGGTCCACCTGGGATGGATGGACTTGATGGGAAAGATGGAAAGCCAGGGTTGAGGGGTGATCCGGGTCAACCTGGCCCTGTTGGCCCCAGGGGAATCCCGGGATTCAAGGGCATAAAAGGACACACAGGCCTTCCAGGACTAAAGGGAGATAATGGACCTCAAGGCCCACCCGGAGCAGCAGGAAGACCAGGACTTGAAGGTGACCCTGGTCCACCAGGACCACAAGGACCACCTGGTGCTCCAGGACATCTGGGTTCTGCAGGTCCCCCAGGTCCACCAGGACCAGCTGGAGCTCCCGGCACAGGTATTCAAGGTGACAAGGGGGAGGCCGGTGAGAGAGGGCTGCCAGGAATGCCTGGGCCTCCAGGGGCCCCTGGGCATCCAGGACAGATGGGAGAACCAGGCAGTGATGGTACAGTGGGGAAAGATGGAACGCCAGGTCTGCCAGGAGAAACTGGTCCACAAGGACagaagGGTGAGTCAGGGACTCCAGGCCTGAGGGGTCCTCCAGGAGAACGTGGTCGTCCTGGACCCCCTGGTGGAGCAGGATATCACTCTAAAGACTCTGGAATAGGAGTAATGGGACCTGCAGGCCCCCgtggagagagaggaagccCTGGAGCACCTGGACAGTCTGGATCTCCTGGAGCACCAGGAATGCCAGGAAATGATgCTGTTGTCAACTATGATGAGATCAAGTCTTTCATTAGACAGCAGGTTATCAAGATCTTTGATGAGCGAATGGCCTATTACATGTCACGCATGCAGATGCCAGTGGAAATGGTAGCACCCCCAGGCAGACCTGGACCCCCAGGCAAAGACGGCACTCCAGGAAGAGTAGGATCTCCAGGGCTTCCAGGCCGTCCAGGACAGATCGGGCGAGAGGGTAGACAAGGACCTATGGGCCCTCAGGGTCCTCCAGGTGTCAAGGGAGAAAAAGGAGATAAAGGTATGGGAGAGATGGGAGACACCGGACCCCCTGGTGCTCCAGGTGTCCCTGGACCCCCTGGTTATGGTAAAATGGGACCACCAGGCCCCACAGGTCAACAGGGTATCCCTGGAATTCCTGGACCACAAGGTCCCCCTGGATCAAAGGGCAATGATGGCCGTTGCCATCCATCTGACTGCATGAGTGGACCTGTGGATTACAGCCCTAAGGGCCCACAAATTAAAGGGCCCATGTACTAGTGAGAGTATGTGAGAGTGAAGGGAAAAGGGAGggtaagaaaatgaaaaaaaaagacaagagcCAAAGATCAACAATACCAAATCTGCCTGCTAAATGCCTTTGGTGTGATCCATGGGGAACCAGTGGAGCTAAAGGGCATCTCTGTCAGTATAATCATGGCTGGGCCAGATTGGTCTATAAGCTATTTTTAAAGGGTACCCAATGCCAAAATTTCCCTTACAACTACTAGTGCTAATGCTAGTGAAGCCTCTCTCTCTGATTTCAACTTTCTCTTTACCGATGCTTGACTGAAAACTCCTGGATTAAGGACCCTGAGCACAAAGAGCTTTCCCTTCTGGACTATAACTACCTTGAACATATGATCCTTGGTTCATTGGCCATGATGCTGTTGTCTCTTGAAGTTCAGCTATTAAGCTGGTTTCACACTGTTCCCAGAAAATTCACAGCTGtgattttatacacattatCTTCAGTGCGATGCGCACGAGATCCTCTAAAGTTCAAATGTTTTCAACTTTTGCGTGACACTTTGCTGTGCACGGTCATTAGCAGGGCAGGAGGCATGGTATTTTGCGTGGAGAAAGATGGAAGAACTAATAAaatttcttcttccttctctccaGAGAGATGCATCCATGTTTGTGCGCAACCTGGCGCAACACTATCCATTTGTCACAAGTGCATCCACCAACACACATCACAGTGTGAAACCAGCTTGATTCTTTGCCAGTGTTTACTATTTGCACCGTCTTTTTAGTACCGAAATGCTTTTGCAAATCATTTTCCAGGTTTTTGTTGGGTTTTCATGGCAGCTGCTGAATTTTGCGCAATGTTATATTACCTTCATGTCCCAAACTGACTTAAAAGAAATGATCTCAAATTTGATTTGGGCCAGATATTGTAGCCtatttgaaattttgaaattgCCTTTCTCCATTCTCCTAGCATTATGATGTAGCTTGATGTAAAGGTGCATATGAGATATAATTATTCCTGTTTCCTTTAAGGCCTTGTGTTGtacatatttgtatttatatgtaatgGCTTTTTTATGATAGATTTTTAATAGATTGGCATCAGCATTTCAGTCCTTATTTTTGCATTGTCATCTCAGATATTGTGGTATTTGTAATAGCACtgcaaaaatagatttttgtaAATTGGGTGAGTTTATATaaattgaagttaataataactCTGATTTCATAACCcatcatatttatttgaattatatgtCAGGTCTCTCTCTGCGACCTTGTACATTGACATTCCAGACCTCCGCcactttttatatcttttaaacTTGAATTTATATCTTTTGATATAGTCAACCACTTTCAGGTAAAAACTTAATGTTCCTTCTGGATAGAGATTCTTTCGCTTTTGACGTGCGCTCATCATCTAGAATTTCCTCTGCTCCTCGTCCATCGTGAGAAAGCCATGTGCTTCACCATCATCTATGGTTTAGAGTTTTCATCCCATAATCTAAAAGCTTTTCTGATCCCATGCCATTCAGCACACTGCTGTGTCAGCCAGGCTCCAACGAGATATATTTACCATCAGCACTTTATCCTCTCTGTCAGACcttcacaatgtgtgtgtgtgtgtttctgtatctATACTTGTATATGTACCTATCAGATGACCAGATGTCTTCACGTATGTAGGTAAATTACTAAAGTAGCCGCTAATCAGGTTTGTTAGGCTTCCCTTTAAGCTTTAGGCTTCCCTTCAAATGTGTAAAGTAAAGtagtatgttttaattttaggactaaataaacaaaaagaaacgtCATGTGTGTGAGTCAAGGTCAATGCATGGTCCTTACAAGTGCAGTAAtacaggaatgtgtgtgtgtgtgtgtgtgtgtgtggtggatggTTTTTGTCCGATTTTCTCAGACCTGGGGCTACTTAAAGATGCACTATGTAAGAATGAAAGTTATTgaaatacatttgaaaatgaaatagaTTTGAGTCCAAACTCGTGTTTTAcagcaaaaatacaaatacgATTCACTTTTTGTTGTGTGAATGGTCAGTGCTGTACTTCACAAATCCTTTCAACATTAGGAGTTGATGAAAAGCAAACCACTTCAGGAAATCCAAATGAAATACACTAATAGTGACTAGCATGTAgtgtttatgcttttttatgcatttagcttttatttcggtttaaatttaaaattcctGCATAGTGCATCTGTAAATCCATCCGTTACGTCATTAATGTCACCGTCAACTTTGTACTTCACATTCATATGtttaatttcagtgaaattCAAGAgttaatttacattattttggCCACCAAAGGCAGTACATGGCTGTTTGtcctttcatttttatatgctTTATAATAGCCTACAAAAAagcaatttaaacaaaattgcCACCATTACATATAGATCCATTTGTGTCATTCATGTGTTAGCTGTttgtgtgcaattttttttaaagaaaaccaaGAAAAGCAAtaaagttctttttttaaagcaga

Function

GO: NA

KEGG:

id description
K24339 COL16A; collagen type XVI alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477180 lncRNA downstream 3783 8420387 ~ 8448303 (-) True G402120
TU477182 lncRNA downstream 15182 8433844 ~ 8436904 (-) True G402122
TU477147 lncRNA downstream 127887 8322519 ~ 8324199 (-) True G402090
TU477149 lncRNA downstream 129009 8322156 ~ 8323077 (-) False G402090
TU476884 lncRNA downstream 534393 7869403 ~ 7917693 (-) False tmem64
TU477491 lncRNA upstream 67258 8612118 ~ 8614804 (-) True G402405
TU477770 lncRNA upstream 594157 9139017 ~ 9141823 (-) True G402674
TU477769 lncRNA upstream 599010 9143870 ~ 9161470 (-) True G402673
TU478003 lncRNA upstream 1075270 9620130 ~ 9620599 (-) True G402892
TU478213 lncRNA upstream 1185823 9730683 ~ 9731257 (-) True G403080
XM_026942220.2 mRNA downstream 34689 8394523 ~ 8417397 (-) True smap2
XM_026942222.2 mRNA downstream 34695 8394523 ~ 8417391 (-) False smap2
XM_026942221.2 mRNA downstream 34703 8394523 ~ 8417383 (-) False smap2
XM_034301795.1 mRNA downstream 513876 7927445 ~ 7938210 (-) True pip4p2
XM_026942388.2 mRNA downstream 564231 7870336 ~ 7887855 (-) True tmem64
XM_034301651.1 mRNA upstream 70145 8615005 ~ 9005331 (-) True adgrb2
XM_034301689.1 mRNA upstream 682535 9227395 ~ 9284493 (-) True runx1t1
XM_034301690.1 mRNA upstream 682535 9227395 ~ 9269400 (-) False runx1t1
XM_026942283.2 mRNA upstream 682535 9227395 ~ 9251794 (-) False runx1t1
XM_034301688.1 mRNA upstream 682535 9227395 ~ 9251794 (-) False runx1t1
TU476702 other downstream 1175442 7261340 ~ 7276644 (-) False fndc5b
XR_003404453.2 other downstream 2016038 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 2077596 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 2276826 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 2862339 5587398 ~ 5589747 (-) True G400815
TU477767 other upstream 603651 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 682535 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 832066 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 842142 9387002 ~ 9416207 (-) False triqk
XR_004577593.1 other upstream 1958429 10503289 ~ 10503361 (-) True LOC117596479

Expression Profile