RNA id: XM_026942398.2


Basic Information

Item Value
RNA id XM_026942398.2
length 4339
RNA type mRNA
GC content 0.44
exon number 8
gene id zfpm2b
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4418578 ~ 4456600 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAGCTCAGAGAAACGGCGCTGGGATTCAAACCGCACACTGAAGGAAGCTGCTTTTTTGTATTTGACGCTTTGTTTTGAAAGGGAAGTGAGATTATCTGGATTGAGCAGTCATGTCCAGGAGGAAACAGAGTAACCCACGGCAGTTCAGACGCCCAGCTATCACAGGAGCGTTTGAGAATGGACAAACGGAgtcagaggacagagagagcgaAGAGAAAGAGATCTTGAAAGATGTAGAAACGACTGTAGACCAAGAAGCACAGGTCCCTTTAGACTCTGAAAACTTTCACATTAAAAATGAGGACGATTCCAGTGCAGGGGATGTGGGTGGAAGTCTGGAAACACAGAAGGAAGTCAGTGAAGGACATAATGGGAAAAACCCAAGCAGCCCGACTGCGTCAGAGGAGTGGGACGGCCCGAGAGAGCTGGAGATGGTCAGCATCGGAGCCGAGAAAGGCGTTCGTTCCCGTCAGGCGCTTCCTCCAGGCACCACATGGGGACCATTCGCTGGGAAAATAGAAAGATCCACAGGAGGAAATGACATCGTACCGTTGGTTCTGACTGGAGGTCCACGATGGCTGATGAATGTGACGTGGGTCAGCGCAGAGGACTCAAAGAATAACTGTGTGGTTTACAGTAAAGGAGGACATGTGTGGTGCTCGACCACGAGAAGTGTTATTGAGGGAGAAGAActcgcagtgtgtgtggtggatgtTTCCTCAAGACTATCGTCCATCCAGCTCCTTCCTCAACAAGCCGCCATGGCGTCCATTCTCCCCAACGCTATCATCAACAAAGACATTTTCCCCTGTAAGACGTGTGGGATCTGGTTCAGGAGTGAGAGGAACCTCCAAGCTCACCTCATGTACTACTGCGGAGGACGGCCGAGGGAAAGTGAGCTGGCTTCAGAGAAACAGACCAACACGAACCCTCAGATATCCCGTACCTGCActtacccacaatgcaacaTGAGCTTCCTGGGTCTACAGGCTCTAAAAATGCACCTGTCTACACATTCTGCTTTCAAGACTGAGGAGACATCTCCTGGAAGCAGTTTGAAATGCACGATTTGTGACTACACGGCTGACACCCTGATGGTCCTGCAGCCCCACATCCTCACTCACCTGTCTCAAACAGGACTCCGGTGCACTCAGTGCCACTTCACCTTCCAAACACCTCAAGATCTATCAAAACACCAGGAGCTGCACAGACACGGTGGTCTGGATGACACATCTATTAAAGAGAATCAAACTGAGCACTCAGAGTCCATTGGTGTCGCAAGTCCGAAGGATAATAAAAGCATCATAGAAAGTCCAGTTCATCAAAACACGGAGCAAGAGAACAGTGAACAAGTGCAGGGAGCTACCAAGGCTGAAGTAGGGTCTGGAATCAAAGCTGGTGTTTCGTACAGTAGAATAAAATCAGAGCCCTCCAGCCCTCGTTTGGCTTCTTCTCCAATTCAGAATCACATGACCCCAGCGTTTCCCATGCCACCCTTCCTGCCCCATGTGCCATTCTCACAGGATATACCCGCAGTCCCACAGGCTTCTGAAATACTGGCTAAAATGTCAGAGCTGGTCCATCGCAGGCTACGTCACGGAGGCACCAACTTCCCCCCAGTGATGTATGGCGCACTGGTTCCAAAAGGAGCAACGTGCTTCGAATGCAACATTTCATTTAGCAACCTTGATAATTATTTAGTGCACAAGAAGCATTACTGTAACGGTCGCTGGCAGCACATGAGCAAATCTCATGATTACAGCATTTTGGACAAAGCCTCAGTGAGTCCTAAAACCGGGGGTGGTTTAGCTAGCATGCTGAATGCTGGCCACTCGTTTGAGGTTAAAGGTCATAATCCCACTCAGTTCAACACTTCTCTAGTTGAGCCTTTCAGTGCAGGAGGAAAAGCACCTGAGGAATTTCCAGTGAACGGTAAAAAAGCGCCGACTCCATGCGATGCGGAGGAAAGTCCGAACGGTATCATGTTAGACTCGAAGAGTCCAAAAATGTCAGAGAGTGAGCTGGACCACAATCAAACAACGTGTGACGCTTGTAAGATCACGTTCAGTCGACATGAGAACTACGTGGTGCACAAGCAATACTATTGCGCCTCCCGTCATGATCCGCCCGCAAAACGAGCAGCGAACAACAAACACGTTCAGAAATCCTTTCGTACCCGAAAGAGAAGAAAGATGCCAAGTCCTGATCCAGTGGTGTCTCAATCCTATCCTATCAGTAGTTCCTATATGTCCCAGGATACAGTAGAGAGTCTCAAGGACCAGCTTCATCACCGGTACAACATGATCCAGGGTTTGGTTCCAAAGCATCCTGAACCTTCCTTGACAGTAACAAAATCAGCTCTAGTTTCAAAGTGCAATGCAATAGCTCAAGAGGAAGGTGATGCACCAATAGATCTGAGTAAAAAATGCACAGTGCAGTTGGGTAAAGTTTCAGGACTTATGGACTATCACGAATGCGCAGTGTGTAAAATTAGCTTCAACAAAGTGGAAGACTACCTGAGCCACAAGCAGAACTTCTGCCCAGGTGCAGTCTTGGAGAACAAAGCGCCaaacagaaaggaagaaggTTCCAGAAATGCAAATGCCTCTGATAGTTTCAGTATTGAGCATTCGGTTCAAAGTGTCAATACTTCTGCATCTGCTGAAAAGCAACCGTCCATAAAGGATGAACACAGCATGATGAATTCTGATAACTATCCAGGTGGTGCTAAGAAAATCAGAGCAGATGAACAGATCTGGCCGTACTATGAGATTAAACCTGCTGACTACGCCACAGGGATTTTCGTTCCACAAAATGAGAGGAGGCAAAGCCCAAACGAGGGCACTGAAGGTGAAAAAGAGCAACCCATGCCAGACGGCAGTCATGTTGGCTCTGAAAATATGGAGAACCCGAAAATAAAGTCTTTAAACTCCAGCCTCCAGGGCGACGACAAGCAAGGACACGAATCTTGCAGCACTTCAACCCCAAACATCCACTTCACGGCTTGTACCCCGGATCAAGAGGGTGCCATAAAACCTAAAGAGAGCATCTCTTCTTCACCAGCCTCCAAAATGGAGGAGATCTCGAGCTTGAAAAGGAGTACAAACGGATCGATCTCGGCAGCGGTTAACGGCAAATACTGTCGTCCCTGCGACATCCAGTTCAACAACCTGTCAAACTTTATAACACACAAAAAGTTTTATTGCTCAGCACACACTACTGAGCATGTGAAATGAGACCTTGATACTGCGTCTCAACCGTTTATACGACAGCAAAAGGACAATCAAATCAGGAGATTTTATCTTCCAGTGGTTTAATAGTGAATATATTTGTTGTGTGTGGTATTTTTGCCTCTTTGtgacgtatttatttatttatttaaaaaaaaaaaaatcaagcgcTGAACTAAACCcggctttacactgtacaatttttggccaattttgctgtcggttttacatcataaaaaaattctgtgGTTGTAAGTTGAGATCAGCGGCCTTCTAACGCATAGTGTGACATGGTCAGATCTCAGACTTactttgaaaaatgtttgtgtttatgtgtttgtgtttataatcTTACACTGCGAACACACAgcctgttatagaattcagcaaAGATTTTATAGtgatcatctcatacagtgtgacaagtaataatctcaAAATATGGCTGATTATGTGCAGTGCAAAACCAGTTTTATACAGTTGAGataagaaaaattaataaacaataattttgACAATAGCACAAAACTCGCACCAGGGCTGCTCATTTAGCCTGTTTGggaattttattaaaaagcagacatttaagtgttaaagatgttttttgCAACAAATAATGGcataattattaacattcaATAGATTCTAGTTTGTCTTTGatgtttttacaattatttacacTTCAGTATGTTAATTCCTTTTGGATTATATTTTGCTTATgcggaaaaaaaaagtacttatACGTGTTTGCTAGttctctgttttctgtctctttttgaaACTTGGATCCTAATGCAATACTTTTTAGAAAATGGATCATTAGCAGTATTATAAATcaaggactgttttttttttttttttttttttgttactccGACCCCAGGAATTGTCTGTTGAAATGTTTCCTCGTCTTGCTGAAGATGATGGAAAGAGGATTTACACTTGAAACTTTGGACTgaatttcatcttttcatcttgacaataggaaaataatgtcgtcaaaaaaaagtgttactATGCATGTACCTGTAACGGAATGAAATTCCAGATGTTTGATCTTCTGATTTTATGTGGCATCTCGATTAAATTTCTAATCTCAGGACTGGG

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474796 lncRNA downstream 118066 4295216 ~ 4300512 (-) False maptb
TU474800 lncRNA downstream 118066 4295216 ~ 4300512 (-) False maptb
TU474783 lncRNA downstream 125421 4290595 ~ 4293157 (-) True G400112
TU474821 lncRNA downstream 134185 4284049 ~ 4284393 (-) True G400133
TU474819 lncRNA downstream 137145 4280777 ~ 4281433 (-) True G400131
TU475162 lncRNA upstream 77241 4533841 ~ 4534131 (-) True G400428
TU475167 lncRNA upstream 101888 4558488 ~ 4562020 (-) True G400431
TU475168 lncRNA upstream 105611 4562211 ~ 4563364 (-) True G400432
TU475178 lncRNA upstream 141200 4597800 ~ 4635057 (-) False polr3gla
TU475179 lncRNA upstream 141200 4597800 ~ 4631283 (-) False polr3gla
XM_026942412.2 mRNA downstream 1741 4411699 ~ 4416837 (-) True LOC113543884
XM_026942414.2 mRNA downstream 73364 4339535 ~ 4345214 (-) False myl4
XM_034301674.1 mRNA downstream 73364 4339535 ~ 4345214 (-) True myl4
XM_034301675.1 mRNA downstream 73364 4340147 ~ 4345214 (-) False myl4
XM_026942406.2 mRNA downstream 80946 4300766 ~ 4337632 (-) False maptb
XM_026942413.2 mRNA upstream 32148 4488748 ~ 4491287 (-) True gh1
XM_026942411.2 mRNA upstream 41293 4497893 ~ 4500858 (-) False LOC113543882
XM_034301720.1 mRNA upstream 41293 4497893 ~ 4500858 (-) True LOC113543882
XM_026942284.2 mRNA upstream 50881 4507481 ~ 4525407 (-) True thbs3b
XM_026942301.2 mRNA upstream 78396 4534996 ~ 4553366 (-) True mtx1b
XR_003403516.2 other downstream 285656 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 1056752 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 1057624 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 1107146 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473969 other downstream 1142623 3273840 ~ 3275955 (-) False G399489
XR_004577542.1 other upstream 504502 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 1130798 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 1716388 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 1915050 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 1979387 6435987 ~ 6436048 (-) True LOC113543912

Expression Profile