RNA id: XM_034301674.1


Basic Information

Item Value
RNA id XM_034301674.1
length 726
RNA type mRNA
GC content 0.46
exon number 7
gene id myl4
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4339535 ~ 4345214 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CcttctaattctctctctcctgctgccTTTAACATGGCACCAAAGAAAGTAGAACCCAAGAAGGAGGCAAACAAAGCATCAGAACCGGAGAAGCCCAAGGAGCCTGACTTTGACCCAAAGAGCATTGCGATTGAGTTCACTGCAGATCAGATTGAAGAGTTTAAAGAGGCCTTCATGCTATTTGATAGAACACCTAATGGAGAAATGAAGATCTCTTACGCTCAGTGTGGAGACGTGATGAGAGCTTTGGGGCAGAACCCTACCAACGCTGAGGTCATGAGGGTGCTGGGTAAACCCAAACCTGAAGAACTGAACACCAAGCTCATGGACTTTGAGACCTTCCTGCCCATGTTTCAGCACGTGTCCAAGTCAAAGGACCGCGGCACATTCGAGGACTTTGTGGAGGGGTTGCGGGTCTTTGACAAAGAAGGAAATGGCACCATAATGGGAGCAGAGCTTCGCCACGTTCTACAGACATTagTGACACCAGTCACTGAGTCCTGGATAAATCCTGTAGGAGAGAAAATGACAGAACAGGAGGTTGAACAAGTGTTGGCAGGACAAGAGGACGCTAACGGCTGCATCAACTACGAAGctTTTGTTAAATACATCATGTCTGGATAAATGAAATATCAGAGgaTTTATCAGTCCTGCAGTGTCTGGAACCCACAAAAAAATTGGAGAACAAATCTATTCATACAAATGTATTTTTGCCccaccatcttt

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12750 MYL4; myosin light chain 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474796 lncRNA downstream 39023 4295216 ~ 4300512 (-) False maptb
TU474800 lncRNA downstream 39023 4295216 ~ 4300512 (-) False maptb
TU474783 lncRNA downstream 46378 4290595 ~ 4293157 (-) True G400112
TU474821 lncRNA downstream 55142 4284049 ~ 4284393 (-) True G400133
TU474819 lncRNA downstream 58102 4280777 ~ 4281433 (-) True G400131
TU475162 lncRNA upstream 188627 4533841 ~ 4534131 (-) True G400428
TU475167 lncRNA upstream 213274 4558488 ~ 4562020 (-) True G400431
TU475168 lncRNA upstream 216997 4562211 ~ 4563364 (-) True G400432
TU475178 lncRNA upstream 252586 4597800 ~ 4635057 (-) False polr3gla
TU475179 lncRNA upstream 252586 4597800 ~ 4631283 (-) False polr3gla
XM_026942401.2 mRNA downstream 1108 4295846 ~ 4338427 (-) False maptb
XM_026942404.2 mRNA downstream 1891 4295846 ~ 4337644 (-) False maptb
XM_026942407.2 mRNA downstream 1903 4295846 ~ 4337632 (-) False maptb
XM_026942409.2 mRNA downstream 1903 4295846 ~ 4337632 (-) False maptb
XM_026942408.2 mRNA downstream 1903 4295846 ~ 4337632 (-) False maptb
XM_026942412.2 mRNA upstream 66485 4411699 ~ 4416837 (-) True LOC113543884
XM_026942399.2 mRNA upstream 73364 4418578 ~ 4456600 (-) False zfpm2b
XM_026942398.2 mRNA upstream 73364 4418578 ~ 4456600 (-) True zfpm2b
XM_026942413.2 mRNA upstream 143534 4488748 ~ 4491287 (-) True gh1
XM_026942411.2 mRNA upstream 152679 4497893 ~ 4500858 (-) False LOC113543882
XR_003403516.2 other downstream 206613 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 977709 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 978581 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 1028103 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473969 other downstream 1063580 3273840 ~ 3275955 (-) False G399489
XR_004577542.1 other upstream 615888 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 1242184 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 1827774 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 2026436 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 2090773 6435987 ~ 6436048 (-) True LOC113543912

Expression Profile