RNA id: XM_026942423.2


Basic Information

Item Value
RNA id XM_026942423.2
length 3712
RNA type mRNA
GC content 0.45
exon number 3
gene id pard6gb
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5559980 ~ 5598363 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGTCATTCTGAaaagttttctctctctctctctctctctctctctctctaggcaGAGGCGGTGATTTTACCCTCCTTCCacatctatttttttccccctgaagtTTGTTGAGCCTCTTGGAGAGTCGTGATCGGAATAGCCTAGGATTACTCTTTCCTTTCCAGGATCTagccactacacacacacacacacacacacacacacacacacacacagagagagtgagaagcGGACCGCAGTGAGACCATCGAGGCGTCAAAAATGAATCGGAGTTTTAATAATAAGGCGCAGAGTTTGCGTCACTCGGACCTGGACGCGGTGGAAGTCAAAAGCAAATATGGTGCAGAGTTTCGCAGGTTTTCAGTGAACCGAGCGAAGCCTGGCAAATTCGAGGAGTTCTTTAAGCTGATCATGAACCTCCACCGCATCGCCAACATGGAGGTGATGATCGGCTACGCTGACGTTCATGGAGACCTGCTGCCCATCAACAACGATGACAACTTCTGCAAGGCCGTGTCCACAGCGCACCCCCTGCTCCGGATCTTTATCCAAAGACAAGAGGAAATTGACTACAGCACCTTCGGCACCAACACACTAACCCGAAAGAAGAAGGCTGGGGTCGCCCTGCGCAACGACCTGAACAGGAAGCGGCCGCACATCCGCATCGGCCTTCCTCAGGATTTCCGTCCTGTGTCGTCTATCATCGACGTGGACATCGTGCCCGAGTCGCACCGGCGTGTGAGGCTGTACCGTTACGGCTCGCACAAACCGCTCGGGTTCTACATCCGAGACGGCACCAGCGTACGCGTCACAGCACACGGTCTCGAGAAGGTGCCAGGTATCTTCATCTCGCGCCTGGTCCCTGGAGGCCTGGCTGAAGGAACTGGTCTGCTCGCCGTCAACGATGAGGTTCTCGAGGTCAACGGAATTGAGGTGACGGGCAAGACTCTAGACCAGGTCACCGACATGATGATCGCCAACAGCCACAACTTGATCGTTACGGTGAAGCCGGCTAATCAGCGTAACAATGTTGTGCGTGCCAGCCGCGTGTCAGGAAGTTCGGGTCAGTCTTCGGATAGCAGCAGCAGCTCGGGCATCACCAGCATGCAGTCTCTGCCATCTTCCATGCCTGCCGTGAGCTCCAGCTACGGCCACGATGACCTGGACAGCGATGAGGAGTTGGACATTGTCATTGAGAACAGCATCGGTCGCCAGACTCGCCAATCGAACGCCTCTCTGGCATCGCTCACATCTCGATCCACTCAGCTGACCTCTGCCTCGCCTCCCAAACCCCAAAGCAGACCGCTCTCCGTCGTGTCCACGGCATCCTTCCACTCTAACGCCAGCCTCAACGGAACAGGCCATAACAGCCTGAGCTACAGGCTTCACAGAGACCTGAACCTCCATCACACGCCCTACAACGGCGCCAGGGAAAGCAACGGCAGCCTCCACAAAATCCTCAGCAGCCTGAGGACAGACCCTCGGCACAGCCTGGCACTGCCCAGTGGCGGAGTAGAGGAGGACGGCATGGTTATcactctataacacacacacgcttggaCAGAGGTGCATCGTTATATCGCCCTCTTAACGCAATCCCACCCAGAGACTTTACAGACTGGGGCAACAGACTTGACAGCCTGGGACTTCACTGCTTTCTTAAAGCcttttgtaaaatgtaatttaacatCTTGAATTTTTACTTGTTCTTAAATGACGTGTCTTATCTTGTCTGTCGGGGGATGCATAGGGAATAGTGTGGTacatgtctcttttttctcttttgttttctcttttttccttttattagtTTTCCAGAGCCACTGATTACATACTAATTTAACATGAATGTCATTTATATCAAGATTTGCATATagaaatcacttttttttttctaaatgtctCATCGGAACATCTGTAAGGTTTAGGCCTCTCTATGACTTCTTACATACAATACAGTATATCAAAGGTTTTCCACTACCACAAGCAGTCCACTGGAATACTGGGAGAAATAAACATCACTAACGTATTAACACAAGCTTTTCGTGACTTTACCAAAGTGTTAAATGTCTCTGTTCTGTGGCTTTATATCTCATTCCAGCAGCCTGAGTATTATAGGTTACGTAGGCGAATACACTGTAATTTCATGAATCACTGTGATTTCATGGATCAagactttgtttctttctttttaaacattcttGATAATGCATCTTAGGAATATTGTGATGTTTTACTCTTTTGTTTGGACACGTGTACTCACagttgggatttttttttcctctatctGTACTATGAATTAGCACGTGTAATGCAGTGAccaaaaaagtgttaaacaaatccTCTGTTTTAACCTCTTTTTTTCTATGTTCTGGGAATCAGACGTGTCCAAATCCTCTATACAGCAATGCAGCACAGAGTTATGTCTTTCATGatgttttctgacaaacaagCACACATTTTTGTCAGGTACCTCCTAATTAATTCTCAACTTGGGCTCATGACCTgagcacacacagctgtgtacAGTCTCTGTTCTTCAGAGACGCCTCAGTTCTCAGCTTGTTTAGCTTCCACATGCAGGTGCTAACTgtccttaaaggaaaaatctgcCCTGAACGACTTGcgtattaatctttataattagtATGTTATGTTAAGTGATGTCCAAGATGAAATGAGATTAGTTTGAACTTCTTTGATTGACATGTTGCTCTGTTTTCACTTACTACATACTACATTACCCACAGTGCCAATGGGATTTAGTCCTctcttcatctctacctaagacagtgatgcagcggcgctttagtcctttagtcctttagtctgtccagctctctcacctcctcatttGTACACTCTGCTTAAACACATCAGCTtaaactttcatgctaatacccaCTGTCAACGCCGTCGCGCTAgtcatctcatagatcgctGACGAGCTGAGCCATAGCTCAGCACAGCTgcgtcatatagctgcattgcattctgggagtCCAAGGTTTGCACCAACTTCTCCACTACTTCTAGGTTGtttctcattaatgtgacaTCATTAATGTGACATCATCGTGATACACAAATGCTAAATTCTCACAGgactaataaaaatacagaaccaaccaacaaattaagATCAGAATTGCtaaacatttgtatttgtttttcatggTGGAATCTTTTGTGCACTTTTATCACCACTGGATCTGGGAACAATCATTATATAAAGCATGAATCCTGTCAGTGTTCATTTTTTAGCCCTTTAGTTAAAGAATGGTGTGTTTgggtgtctgtctgtcactcactTTTGAATCTTTTTGATGGTGTGTGCACTCCGGTTACCTGTTAGTTTTTTAGATGAGTCCATTAATGTTAGCGTGGGCAACTTGTATCCACGTACTCTTCATGATCCTGTGTGCCTTAGACCCAAACATGGGACTCTGGATAACTCAACTCCTGCATCCACTATAATCTGGCCACTGAATGTTACGTAGTTTCATTCACATGCGTATCTGTGTCACCCTCTGCTGGTCGCTACTGGAGGTCATCGACATACCAGGAACCACCTCAAATCAgagtaaatgtatatttattctgcagaatttctgaaatttaaacattgtctttgtgttttcctttctttgtttgtttttccctctGTACAACAATTTTAAGTTTGAATAAAAATCTTGATTTTATGATGA

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0035844 cloaca development biological_process
GO:0045176 apical protein localization biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0001841 neural tube formation biological_process
GO:0021510 spinal cord development biological_process
GO:0032154 cleavage furrow cellular_component
GO:0005634 nucleus cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K06093 PARD6; partitioning defective protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475475 lncRNA downstream 179043 5371072 ~ 5380937 (-) True G400676
TU475417 lncRNA downstream 280666 5278903 ~ 5279314 (-) True G400622
XR_003404451.2 lncRNA downstream 317928 5240099 ~ 5242052 (-) True LOC113543905
TU475347 lncRNA downstream 423339 5128235 ~ 5136641 (-) False LOC113543870
TU475266 lncRNA downstream 524058 5030859 ~ 5035922 (-) True G400501
TU475747 lncRNA upstream 212981 5811344 ~ 5812012 (-) True G400913
TU475958 lncRNA upstream 308784 5907147 ~ 5971174 (-) True G401106
TU476060 lncRNA upstream 423191 6021554 ~ 6021765 (-) True G401196
TU476110 lncRNA upstream 498616 6096979 ~ 6187263 (-) True G401230
TU476142 lncRNA upstream 589610 6187973 ~ 6188409 (-) True G401243
XM_026942103.2 mRNA downstream 969 5550378 ~ 5559011 (-) True bloc1s4
XM_026942378.2 mRNA downstream 10322 5541465 ~ 5549658 (-) False asns
XM_026942379.2 mRNA downstream 12131 5540376 ~ 5547849 (-) True asns
XM_026942328.2 mRNA downstream 117119 5428961 ~ 5442861 (-) True umad1
XM_026942348.2 mRNA downstream 132377 5391522 ~ 5427603 (-) True glcci1a
XM_026942333.2 mRNA upstream 215541 5813904 ~ 5846278 (-) True dtnbp1b
XM_026942332.2 mRNA upstream 215541 5813904 ~ 5835037 (-) False dtnbp1b
XM_026942331.2 mRNA upstream 215541 5813904 ~ 5835037 (-) False dtnbp1b
XM_026942335.2 mRNA upstream 215541 5813904 ~ 5822845 (-) False dtnbp1b
XM_026942101.2 mRNA upstream 477213 6075576 ~ 6082184 (-) False csnk2b
XR_004577542.1 other downstream 551519 4961102 ~ 5008461 (-) False sept7a
XR_003403516.2 other downstream 1427058 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 2198154 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 2199026 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 2248548 3311361 ~ 3311432 (-) True trnae-cuc_42
TU476079 other upstream 574625 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 773287 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 837624 6435987 ~ 6436048 (-) True LOC113543912
TU476702 other upstream 1662977 7261340 ~ 7276644 (-) False fndc5b
TU477767 other upstream 3550148 9148511 ~ 9161470 (-) False G402673

Expression Profile