RNA id: XM_034301442.1


Basic Information

Item Value
RNA id XM_034301442.1
length 2129
RNA type mRNA
GC content 0.44
exon number 10
gene id styk1a
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12465737 ~ 12482142 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCTTAGCATTACTCCTTAGCCAAAATATATTTCCGGTAAGAGAAATCTGGGTGTGGAAATGAGGAAATACTGGTTAGGGCAGGGCATACCTTTAAGGTGAGTAAAGTGTAACACAACAAGAAAAGCAAAACATACAAGTTGGTTACTGATCTGTAAGACAGACAGTACGGAACGTAGAAACAGTTAAGGTTATCAACATAGGCAAGCCAAATAGTATATGGCTAGGATGTTGGATTGAACCAATATCAACAAAATctatcacagaaaaaaaaaagaatatgacaggataagaagACAACCCAGCACTGTTGCTCTTTCCTACACATCTCAGCAGCATGTTGAATTCAACTAATGTAACAAGCCTGTGTGATTCAGAAGACAGGTTATGCAtaataCAGGTATACCAACAGGAACTCATAGTGATTCCAGTGCTGCTGCTGGCAGCATTCCTTTGTTTGTTGATAAGTTTGTGTTTTCTGAGGCTGTGCCAGAAGGAGGAGATCATAAAACATAACTCCCAAAGACAACACTTCAGTAACAAGAGGCAACACCTGCAGGGCATTGATGCACCTCCAGAGCTGAACCCCTTGGCCTATGAAGTTGTACCTATGACAGTCCAAACCCAGAACCACAAGCCCAGCAGACAGCCTGCAGAACCGCAGTTGTCCACTGAGAGGCAGCATGGTTCTTTTGAGCAAATCACCCGACTGCCCCTGTCTTTCACAgtaaaaccagaaaacacagtCACTCTCTACCAGGCCACTATGGACCAGAAGCCAGTTGTCTTACGAGTGCTCAGTGAATCAGCTGATTCCAGGGAGCGCCAGGTCTTCCTGAGCTTTGCCCACTTCCTGTCAGAACTTGGGCCCCACCCATGCCTGCCCAGACTGCTAGGGGTGGTGAGAGACAAGTCACCCCTAACTATGATATTGGAGCAGCTGGAGAACAGAGATCTTCTAGGATTCTTATGGAGATGCAGACAGGGCCACCCAGGTCTGGCAGCCCAGTGTGCTATTACAGAAAGAGTGCTTTTCTCAATGGCAAGACAGATCGCCTCCGCTCTGGAACATCTACACAGTAAGAACTGCATTCATGGCAACGTTGGTGCACGAAGTGTCTTGGTTGGTCGAGACCTCTCCGTAAAGCTCTGGGGCTTTGGCCCAGCTTTTCGTAGGAGGATGAAGGTGGGGACTTCAGGGGAGGTGAAGGAAGTAGAGATGAGAAAGTGGCAAGCTCCAGAGGTGTTAGCCCGTCAACCTGTCGGTCAAAGCAGTGATATATGGTCATTTGGTATCTTGCTGTATGAAATGGTAACATTAGGGGAACCTCCCTTCCCTAAAGTAATGGCCAGTGAACTCCTGCAGTACTTACAGAGAGGGAAAAACCTAAAGAGACCAACCAACTGTTCCAACTCACTATACTCCATCATTAAGGCATGTTGTCAATGGAGACCACAAGATCGAGCTCCACTGAAGACGGTGATTTCAATGCTCCAATTTGCTGAGAGCCACGCCAGTGACACAGTGGTACTTCAAGCACCTGAGCCACTGGACATTGAGAAGTACATGCAGGAAGCGGGCTATGAAGAGGCTTACAATTTTGCTGTCCTTTAACAGGACTTTTGAAAGTAGTTGTATACTTTTGTAGGCCTAATGTAGTGGTATTCATGTTATGGGGCGTGGTCTGCTGGGGGCGGAGGGGGATGTGGTGCACAGGGATACTGCAGGCTGGGAAAAAAGCAGAACTGATTTTAGTTTGgtaatttatttagtaataaacataaacttctgcaataaatttaaacaatgtATACATGATCGGTACAAACAACTCCCAGATGCATCTGTCACCCTTAGCATGTGAAAGGGGAGTTATTTTAGGAACCATTTCAACCTTCTCAAATCTAAAATTggtcattatcatcatcatcatcatcaacaacaacaacaacacgaAATATAtaagaatttatttttgaatatatatatatatatataagaatatataaattCTATACAGGACCACTTCAAAATCTGTTTCATAATGGGATGTTTTTAATCATGACCCACATATTGTATAAGCTCTAAGCTCGGATTTTAAcctcaaataaagaaaaaaacacctggAA

Function

GO: NA

KEGG:

id description
K17510 STYK1; tyrosine-protein kinase STYK1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479803 lncRNA downstream 190235 12275268 ~ 12275502 (-) True G404421
TU479760 lncRNA downstream 318074 12146083 ~ 12147663 (-) False grin2da
TU479664 lncRNA downstream 339897 12125457 ~ 12125840 (-) True G404282
TU479624 lncRNA downstream 465227 12000266 ~ 12000510 (-) True G404243
TU479622 lncRNA downstream 468267 11997070 ~ 11997470 (-) True G404241
TU480108 lncRNA upstream 32329 12514471 ~ 12515210 (-) True G404667
TU480079 lncRNA upstream 54205 12536347 ~ 12553725 (-) False fam131ba
TU480124 lncRNA upstream 92938 12575080 ~ 12577284 (-) True G404681
TU480125 lncRNA upstream 94390 12576532 ~ 12578806 (-) True G404682
TU480131 lncRNA upstream 107130 12589272 ~ 12591533 (-) True G404687
XM_026927862.2 mRNA downstream 3381 12447738 ~ 12462356 (-) True zgc:194578
XM_034301702.1 mRNA downstream 25390 12434972 ~ 12440347 (-) False si:ch211-232m10.6
XM_026928356.2 mRNA downstream 25390 12434972 ~ 12440347 (-) False si:ch211-232m10.6
XM_026928355.2 mRNA downstream 25390 12434972 ~ 12440347 (-) True si:ch211-232m10.6
XM_026927850.2 mRNA downstream 38348 12420503 ~ 12427389 (-) True ccdc106b
XM_026928401.2 mRNA upstream 33174 12515316 ~ 12553760 (-) False fam131ba
XM_026928400.2 mRNA upstream 33174 12515316 ~ 12553760 (-) False fam131ba
XM_026928399.2 mRNA upstream 33174 12515316 ~ 12553760 (-) False fam131ba
XM_026928398.2 mRNA upstream 33174 12515316 ~ 12553760 (-) False fam131ba
XM_026928397.2 mRNA upstream 33174 12515316 ~ 12553760 (-) True fam131ba
trnay-gua_21 other downstream 641774 11823876 ~ 11823963 (-) True trnay-gua_21
trnay-gua_20 other downstream 643273 11822377 ~ 11822464 (-) True trnay-gua_20
trnay-gua_19 other downstream 644773 11820877 ~ 11820964 (-) True trnay-gua_19
trnay-gua_18 other downstream 646266 11819384 ~ 11819471 (-) True trnay-gua_18
trnay-gua_17 other downstream 647763 11817887 ~ 11817974 (-) True trnay-gua_17
trnav-cac_22 other upstream 88322 12570464 ~ 12570536 (-) True trnav-cac_22
trnav-cac_23 other upstream 89451 12571593 ~ 12571666 (-) True trnav-cac_23
trnav-cac_24 other upstream 91457 12573599 ~ 12573671 (-) True trnav-cac_24
trnav-aac_24 other upstream 92598 12574740 ~ 12574815 (-) True trnav-aac_24
trnav-aac_25 other upstream 94590 12576732 ~ 12576804 (-) True trnav-aac_25

Expression Profile