RNA id: XM_034301444.1


Basic Information

Item Value
RNA id XM_034301444.1
length 2199
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC113527126
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 756001 ~ 765127 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACAGCAGCCACTGGCATTTTATTGGCCCCAACCTATGATCAAAAGTCAAACTTCATTTCTGTAAGACTCTACAGGAGAAAGATGGCGGGTGATTCTGCTGGTGAGGAAATGGCTACTGCGGACTTTGCTCAAGGTTCTACAGGAGACTTAAGGATCTTGTTGTTAGGGAGAAGTGGATCTGGGAAAAGCTCCTCAGGAAACACAATCCTGGGAGAAAAAGtgttcatcagtccaaaacGCTATAAAGAGAAAGTTACTAAAACATGTGAAGAGCAAATCCGCCATGTTGCAGGaaggaaggtgtgtgtgattgacaCTCCAGACCTGCTGGATCCAGATGTCACAGAAGATGAGCTCAAGCGAGAGAAAGACAAACTggtgtctctctgtcagtctggCCTTCATGCTGTTCTGCTTGTGGTTCCTGTTGGAGAAGAGCTGCAGAATGAGGAGGAGATGCTGGAGTTCATTAAAGAATTATTCAGTCCAGACATCCAGAAGTTTATCATAGTGCTCTTCACTGCGATCGAGCAGCACATCCAAGAGCAGGGAGAAGAACTGAAGCAGCTGATAGAGAGGTGCTGTGgacatttccatgtttttaacaacaaacagcTTGTAGAAGATCAGGTTACAGAGCTACTGGACAAGATTGAGAACTCAGTGAAGAATAATGTAGGAACATTTGTCATGGGCCAGAGGAGAAGGAACAGCATGGATTGGGGCACCTATTTTCCAGAGACAACACCGCTGCACCCTGAAGAAGACAGGAGGATCGTGCTGGTGGGGAAGACGGGTGTTGGGAAGAGCGCTTCAGGAAACACCATCCTGGGAAAGAAGAGATTCAGATCTGAGTTTGGTTCATCGTCTGTAACCTCAATGAGTGAAATGCAACAGGATGTAGTTTTAAGGAGGACCGTGTCCATGATCGACACACCAGGGTTCTTCGACACACAACTGTCCCGTGAAGAGTTAAGTGAGGAGATAGGGAGGAGTGTTTATCTGTCCAGTCCAGGACCTCACGCTTTACTTTACATCCTTCCTGTTAATAGTAGATTTACTGAACAGGAGGAAAATGTTATAGAGAAATTAGAGCTGATTTTTgggagagagatgaaaagataCACAATAATTCTCTTCACTTATGGAGACCAGTTAGAGGGGAAGTCTGTGGATACGTTGATTCAGCAGAACAGATCTCTCAGCAGGCTAGTTGCTCAGTGTGGAGGTAGATATCACATCTTCAACAATAAAGACCTGAGAAACAGAAAGCAGGTCAGTGAGCTACTGCAGAAGATAGACAGAATGGTGGAGGAGAACGGAGGAACCTGTTATACCAATGAGATGTATGAGGAAGCAGCAAGAATCAGgagagatgaagaggaggagatgAAGATAAGGGAGGAAACAGAGAGGCTCAGacaagaggagaaggagaagatgagcgaggaaacagagagactcaggagaGAGCTAGAGGAGAGGATGATAGAGAATAAaagcagagaggaggaggagaagggtTTCAAAGGGTTTTTCAAAAGATTCAAGTATTTTTTGCTTACTGCTGGTGGTGTTGCATTTGGAAGTGGAGCTCTATCTGGAACTGTAGCAGGAGCTGTAGTGGGTGGTGCTGTTGGAGGTCCTGCAGGTGCAGGCATTGGGTCTGGTATCAGTAATGTCCCACGTAAACTTGTAGAAAAATATAAGCAGAAAAAGCAgagcacacagagagaaagtgcCCCAGAAAATGCACCAGTGGAAAGTGGGATTGAGTCACCTGATTTGGAGctcatgtttttggaagaaaacAGTTCCGAGACATCTCACTTGATCCCTAACTCTAATGTAAGGCATCGGTTAACATGGAGTCGATTTCAAAATCAGGACTAAACTAGGCAAGTTACTGTCatgtatttatgtacattttaaatgctgtattttttattactaatcAACTTCGGcttttttactgtaacacacacacagtgtttattactgacttattgcatgtatttatttgggtttaaaaaacatttttatagttCTTATTGATTACTCTGttgacaaatatattttaagatcTTAAGGTagtttgttattaatattacttcatttttttatgattgCAGTGGTGATTGTTATCATTCtgaattttcacacatttttcattacttttataataaatcataaaacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472461 lncRNA downstream 111992 642402 ~ 644009 (-) True G398338
TU472424 lncRNA downstream 160012 595118 ~ 595989 (-) True G398304
XR_004577543.1 lncRNA downstream 338682 414465 ~ 417319 (-) True LOC117596419
TU472224 lncRNA downstream 448592 307118 ~ 307409 (-) True G398158
XR_004577546.1 lncRNA downstream 450128 305279 ~ 305873 (-) False LOC117596423
TU472520 lncRNA upstream 76809 841936 ~ 846790 (-) True G398393
TU472521 lncRNA upstream 82618 847745 ~ 848753 (-) True G398394
TU472522 lncRNA upstream 85323 850450 ~ 851339 (-) True G398395
TU472497 lncRNA upstream 113898 879025 ~ 881892 (-) True G398371
TU472530 lncRNA upstream 118062 883189 ~ 925071 (-) True G398403
XM_026915926.2 mRNA downstream 4681 747910 ~ 751320 (-) True LOC113527787
XM_026939079.2 mRNA downstream 21867 726950 ~ 734134 (-) True LOC113541895
XM_034301706.1 mRNA downstream 63614 677903 ~ 692387 (-) True sox10
XM_034301707.1 mRNA downstream 65706 677903 ~ 690295 (-) False sox10
XM_034301708.1 mRNA downstream 94938 652498 ~ 661063 (-) True LOC117595703
XM_026914683.2 mRNA upstream 68765 833892 ~ 839441 (-) False LOC113527139
XM_034301595.1 mRNA upstream 68765 833892 ~ 839441 (-) False LOC113527139
XM_026914681.2 mRNA upstream 68765 833892 ~ 839441 (-) False LOC113527139
XM_034301594.1 mRNA upstream 68765 833892 ~ 839441 (-) True LOC113527139
XM_034301596.1 mRNA upstream 68765 833892 ~ 838574 (-) False LOC113527139
TU472265 other downstream 273993 474566 ~ 482008 (-) False LOC117596396
TU472228 other downstream 430456 319734 ~ 325545 (-) False pick1
trnar-ccu_18 other downstream 445346 310583 ~ 310655 (-) True trnar-ccu_18
TU472486 other upstream 120575 885702 ~ 890280 (-) True LOC117596444
TU472487 other upstream 134401 899528 ~ 906361 (-) False fam234b
XR_004577594.1 other upstream 142498 907625 ~ 907779 (-) True LOC117596481
XR_004577595.1 other upstream 144942 910069 ~ 910223 (-) True LOC117596482
XR_003403678.1 other upstream 149071 914198 ~ 914352 (-) True LOC113536357

Expression Profile