RNA id: XM_034301455.1


Basic Information

Item Value
RNA id XM_034301455.1
length 1029
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC117596405
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1808522 ~ 1809853 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGACCCATTTTCAGATTAAGCTTTCTTCTTCTGAAGTTGTGCTGAAGGACACAGCTGAGGCTGTTATTGTTCCATTAAAAGATGGCATCTCCTCTCTGAACAGAGTCTACGAGGCCCTGATTAAGGCAGATGTACATCCTATTACTGGGCAATGCTCCAACTACGACTACATCAGACAGCAGATAGTGCAGGCTCATCAGCATCTGCAGAGGTCAGAACAGACGGCCAGTTCAGGGTTAAAGAGTCTGGATAAAAACTTAGAGTGGCTTACACAAGACGAGGGAAAACTCCAACGTGAGAAGAGTAGCACTGAGACTCATTTAAAAAACCTGAGAACAGAGCAGGCATCTAATGAAAAATTACTCAGGGACTCTCAGGGAGCTCTGGAGCAGGCCAGGGGAAATCTGAATTCAACCAAACAGACACTTCGGGATCAGGAAAACAGGAGACACAATGCTGAAATCATCACAGGTGTTGGGGCGGGGCTGTTAGTTATACCATTCTTTGGATGGATTGCAGGTTCTGCCATGTTGATTGCTGGCGCAGTTGAATTGGATCAAGCAGCACGTGCTGTGAGAGTGGCTGAAGAGGAGGTGAGAAATTCTGAGACTGAAgtggaaaaatacaaacataaagTATCTGACTACGAGTCCAAGATTTCCCAGACCAAACATGACATCAGTCAGAAAGATGACAAGCTGAAGCAGACACGTGAAGAAATCCAGAGGGTGAAGAAGCAGATAGAGTCCGTAGCTGATTTCCAGCAGAAAGTCAGAAGAGCTGTCCACCTCCTGGGTGTTCTGAGCGGGAGGGCCAGCGTGGCTGAACATCAGACTCGCAGATTCATCCTCCAGGAGCCTGTGATGAGGGTGATGGAGGATGTGATGAAGGCCACAGAGCAAATCACAGGGAATGAGCTCCTCTATGACAATGACATGCCAAGGCTGATCCATCAGATGAAAGAGAACAGCCAACGACTGGCAGCCATCTGTGCCTCGCAGAACAGCTCTACGAATAACTACACTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473015 lncRNA downstream 81994 1726120 ~ 1726528 (-) True G398751
TU473004 lncRNA downstream 92059 1715036 ~ 1716463 (-) True G398743
TU472992 lncRNA downstream 116606 1691472 ~ 1691916 (-) True G398732
TU472993 lncRNA downstream 116606 1691665 ~ 1691916 (-) False G398732
TU472983 lncRNA downstream 128840 1677917 ~ 1679682 (-) False G398730
TU473238 lncRNA upstream 15744 1825597 ~ 1835296 (-) False G398890
TU473234 lncRNA upstream 22963 1832816 ~ 1864843 (-) False G398890
XR_004577585.1 lncRNA upstream 65346 1875199 ~ 1876420 (-) True LOC117596467
TU473273 lncRNA upstream 142068 1951921 ~ 1952184 (-) True G398922
TU473276 lncRNA upstream 146193 1956046 ~ 1959562 (-) True G398925
XM_034301781.1 mRNA downstream 39773 1766704 ~ 1768749 (-) True LOC113524064
XM_026910171.2 mRNA downstream 79405 1726901 ~ 1729117 (-) True LOC113524053
XM_034301521.1 mRNA downstream 117841 1683598 ~ 1690681 (-) True mief1
XM_026910204.2 mRNA downstream 159475 1639569 ~ 1649047 (-) True cbx7a
XM_034301643.1 mRNA downstream 216788 1565795 ~ 1591734 (-) True st13
XM_034301780.1 mRNA upstream 11830 1821683 ~ 1823769 (-) True LOC117596466
XM_026910160.2 mRNA upstream 49029 1858882 ~ 1860957 (-) True LOC113524043
XM_034301779.1 mRNA upstream 63066 1872919 ~ 1875037 (-) False LOC113524042
XM_026910159.2 mRNA upstream 63066 1872919 ~ 1875008 (-) True LOC113524042
XM_026910212.2 mRNA upstream 106437 1916290 ~ 1932126 (-) False LOC113524085
TU472900 other downstream 216793 1569003 ~ 1591729 (-) False st13
XR_004577580.1 other downstream 346452 1461324 ~ 1462070 (-) False LOC117596459
XR_004577579.1 other downstream 346452 1461354 ~ 1462070 (-) False LOC117596459
TU472657 other downstream 490886 1276653 ~ 1317636 (-) False LOC117596427
TU472656 other downstream 526751 1276653 ~ 1281771 (-) False LOC117596427
TU473235 other upstream 15488 1825341 ~ 1881058 (-) False G398890
trnad-guc_31 other upstream 438307 2248160 ~ 2248231 (-) True trnad-guc_31
TU473396 other upstream 562443 2372296 ~ 2426606 (-) True G399028
TU473971 other upstream 1151860 2961713 ~ 2964157 (-) True G399490
trnay-gua_7 other upstream 1359481 3169334 ~ 3169421 (-) True trnay-gua_7

Expression Profile