RNA id: XM_034301470.1


Basic Information

Item Value
RNA id XM_034301470.1
length 7083
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC113534955
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 15073669 ~ 15136790 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacgcgcgctctcacagataaacacacacacagacggatGACGGGATAGAGTCAGAGAAGGACTTCCGCGTGAATCGGtttgcaCGCAGGTAATGAGACGTTTATGCTGAATTCTACAAGACAGCGGCACCGATCCGGTTCTGCGCTGAGGGCAGTGTCAGGGCAGCGCGCACGAGACTACACCGACTGTCACAGGCAGCTTACTCTGCACTCGGAAGCGTGAATCGGTGTCACGGTGCCCGCTGTACAGCTCCACTCCTGCAGCGTAAAGAACAGGCTGCTCGCTGCTCTTcctgtctggctgtgtgtgtgctcctctTAAACTCAGCCCACACACCGAACCAAAGCACCAGCGCGAGCGCACCGATGCACCGATAACACAAAGGCACAGAACCGAAAAGTAAGAAGGCGTAACAACCCCGGCGCTCGCGCACAAAACTCAATGTACCAAAAAAGTAACGCCGATAAGAGCAAccaaagaggaagaggaggaagaggaggaaggacCGAAGGCAGGACGCTGTAAAGCCACGCGCAGCGGCGGATCATGTTCGTTCCCCTGCCGGTGCCGTTAGTGCTGCAGAGAGCTGCTCCCGACCTCTGGCGCCTCAAAGCCCCGCTGCCCCTGCGCTCCACACACGTAGATATCAGGATGAATAAAGCAGTTGATGATGAGAAGACTGAAGCTGACTTTCCTGAAGACAGCACAGACTTGAAGAAGAACAGTCCCAAGGCTAGTGATCAgACGCAGCCAATGACAAGCCCATTCTGCCTCTCTCCAGCCCCAAGCCACAccaaggttAAAGCAGGAGAAGCCCCCGAGCTCAGTTCCCATGCTCTGCCTCCTCCTCTCCCACATACACAGCTCATGTTGGCCGGCAGTCAGCTTGCAGGGCTGGCGGCTCTGCTACCTGCTCAGCAGCAGTTATTGCTCCAGCAGGCTCAGGCACAGCTCCTGGCCGCCGCAGTGCAGCAGACCAATGCAGCTCATGCAGCTGCTGCAGCGAGTCAGCAGCAGGCTCAGCAGCAACAGGCCAATCAGGCTCTAGCCCAAGTCCAGCCTCAAGCCAAAACGGAGCAGAGTCCTGTTCATGCTCCACCACCACTCGCCCTCTCACAGCCCATCCAGCTCACTGCCCAGGACATTCAGCAGCTGTTGCAGCTACAGCAGTTGGTGCTGATGCCAAGTCACCCTCTGCAGTCTCCTGCGCAGTTCCTCTTACCCCAGGCCCAAGCCCAGCAGAGCCAGCAGGGTCTGCTTTCAACACAAAATTTGATTTCACTACCTCAGCAAAGTCCTGGATCTCTCCTGACCACACCACCCAGACTGAGCATGCAAACTCAGCGCCATCATGATGCCAGGCCATGCTCATTACAAAGGGAGAAGGGAAGAGACAGCAGCATGACACCATCAGTAGCTGCACCCATGAGCTTGGCTGCTACAGTAACCTCACACAGCGAGGAGCCGAGTGAtctggaggagctggagcagtttgctcGCACCTTCAAACAAAGGAGGATTAAACTTGGCTTcacccagGGTGATGTTGGAATGGCCATGGGGAAGCTGTATGGCAATGACTTCAGTCAGACCACCATCTCACGCTTTGAGGCGCTCAACCTCAGCTTCAAGAATATGTGCAAGCTCAAACCCCTGCTGGAGAAATGGTTGAGtgatgcagaAACTATGGCAATAGACAGCATGCTGCCCAGTCCCAGCTCACTGTCATCTCCGATGCTGGGCTTTGAGGGTTTGCCTGGACGACGCAGGAAGAAACGCACCAGCATTGAGACAAACGTCCGTGTTGTTCTGGAGCGTAACTTCATCACGAACCAGAAGCCTACCTCAGAGGAGATCCTTCTGATGGCCGAGCAGCTCAGCATGGAAAAGGAAGTGATCCGTGTGTGGTTCTGCAACCGCCGGCAGAAAGAGAAACGCATCAACCCCTCAAGCACCACCCCTCCCCTGCCCAGCCAGCCCCCCCCTGCCACACACAAACCCCCCTGCTACAGTTCACACATGATGTCCAGTCAGGGACTAGTTCAGGCTACCACCTCAAGTCTCAATGTGACAGCTGTTAGTCCCACCCCCTCTGCGGCCTGCCCTCCTAACCCTATTGGCCATGCATCGATGAGCTCTGCCCCACCATCAGTGACTTCCCCTCCTCTCAGCACAGCTAGCCCCAGCCCCACTGGGAACTCGGCGATGGGTGTAAGCACAAGCATGAACCAGGCTCTCATCAGCAGCCATCCACTGGCTACAATGCAAGctCTGGCTGTCAGGGGTGGCCAGATGCCCATTTCAGCCCTAGAAAGCAGCGGTCAAATGTTCCTGGCTGGGGCCACAGCTCCAGGGGTGGGACTATGCTCCTCCCTCTTTCTTAACCGCCCCACCTTGTTGCCCATGGCCACAGGCACCAGTACGGGATTGGCCAACGCAGCACATGCATGTTCACCTTCCAGTGCCAGCCACATGAGCCCAGACTCCTGCTCTGCCTCTCTGTGCTCGAGCCCTGCTTCCTACTGCTCCTACAGTGAAGCCTCTCCGCCACCTCTAGGAGGGGCAATGGCAGAGTGACACCTGCAACGGCCTATCACACGCTGAAGGGGAGGAGTCAGATGCAGCCGAGACAAATACAAACAACCTGCCTTTTCAGGCGAAgccttctctcactccctctaTTTCTCTCCTCCACTCCCTCTCCCACAATACCAAAAATATCCTGAACACAGGAAGAATGAGTGTGAGAAAACACGAAGATGGGGCAGTGAACAAAGAAATGTATTGATCTGTTCATTTTAAGGGCAGAGTTGCAGTGCTGCTTTGTTAGTCATAAACAATAATGTACACTTACTCCTTTATAAACAAAAAGACACTTATACAACCAGCTGAAGCAGAAGGTAAGCAGTGATTGTTGATAGCCAAACAGTGattgttgtgaaaaaaaaaggtggcgGATAAATGGAATGAAGGGAAGGTATTTGACTGCTGTCAGCGGATGGAAGGGATGAGTTGAAACCAAAAAAatagcttgaaaaaaaaaaaaagactcagaaagacaaaaatgaaaaacatgccAAAATAGCCAAAACCAAAACACCAAAAACTGAAACCAAAAATCGGAGAGAAAAGCTTTACCTAAAAGACTTTAAAACCTGACTTGTCCAGGATCAGATCATCAGCTCCACATATTCTCCTCATTTTTcaggttttctgttttatttttcattattttatatccTGTTTCAGTACTTTCAGATttgatttttgcattatttttcttcttatatgtcttttgtgtacatttacatcTTTCTCAAACTACCTCTACCATAAGCTTGCTAGAGTAACTATTTGAGACTGCCATCATTTTGCCTAGCCACTTTTTATTTAAGTAATTCTTTTATTGTTATCATCATGTGTTTCAGTGGCATGATAAGCTGGGTGTTTGTACTAGTACTGCTATAAGCTCAAGCCCTTTTTTAGCATATTGATTCCttgtcttgttttattcatGATACCAAATCAACTCAGACTCATTCTCTTCATCTCTTGATACCAAAGCATTTGTCTGTCCTTGTGGCATCAGCAAGCAAGTGTTCAGACGAGACCTCAGATATGtcagaagaaaaacacactaCCAACATCTAACAACTAAAAAAGTGATGCTTCCCCGTGAATCCTCTCGTGACCTTCTCCCGCGTGCCGGAAGGCGAAAGATCAAAAGGATCAAATCAAGAATGGGATTAAAAAGGAGGGAGAAAACTCAACATGCCAGAGTGGCCACGTGTAAAGATGGATGTGTGGGAGAAGTTCTACAAGCACCCTCTACAAGGGAAAGCCTTCAAAATGGATTACAAAGCATCACTActgttaattttctttttttctgtttttcaacaCAAGGAGCAAACCAAAAAAGTGAGCAAAACTAATGAATGAGTGAGCTAAATGAAAACAAGGAACCACGAAAAGAAAACTAAATACAATGCAATGAGCAAATATGAGGTGGATGAAGAGGATGTGCTGGGGCAACAGTTGATCATAGACTATGATTGCTGTGATTGGCAGTTCAGTGGTGAATGACATGCAAGCTCCATGCTCCTCTCCTCCTACCTCCTTTCCATGATGTGTGACCTTGTTTTTTTCACTCACATTCCTGAGGAATATTTATTGACCTCACTGAACTGAacttaaaatacatatatattttgttttattgcctTTTTCTTGCTTTATATGTTGATGCTCCTTGACTTTGTCTCATTCTTTCTATTTTTGGGATGATTAGGATAATGTATTGCCTATTTTGATATGTTGTTTTGATCTTACTGTGGGGagtttaaaatattactgtGAAAATGTAGCTTCCAAGTTATTCCTTGATCGAGAATGTTGTGAAAAAAATAAGCCAAAACTGGAAAAACCAAAAGCAAAATCTTTTTTGATACATAAATGAGCCAAATAGCAGCCAAACCAATGAACAATGGATGAAGGGAGACAGCTAACTACCTGCACTGGTGCTAGGAGAGATTGAAGGTGTGTATTGAAGAGTgcttgtttgtgtatgtgtgtgtgtagaaaaaaCTATTCTCCAGCATATAAACCAAACTGAAATGAACCAGTTAGCCTGCACACCTTCTGTCCATTGTATCACCAGAGAGCAGTGAGTAGCTACTGTACATCATCTCAGAAAAGACATAAAAGAACAAGGACACAGAGAAACCAATGATGAATCTAGCTGCAGTGGGAAGTCGGGGGGTGGGGGTTGTTGACATACACTTCTAGAGGGAATGTACCTGTTAGTGTTTCAATAGATTTTGTAGGAAAAAAGCTAACTTATTGCTAATGTGAAAAAggctgtgataaaaaaaaaaaaccttatgaAATGTTGATGATGAAAACTTCAGACCAAAAGCTTTAAACTGTTTGTCtttggattttctttttcatgcaaagatttgtgcttatttttgGAATGGTTGTTTTACAATTTGCAGTGTTTTGCTTGATGATTTGTATGGtactgttttctttatttatttgtttatttatgtatttatgatgttttctttttaatttatcagtttgggcattttaatcattatactGGATAGATTTGAGGGTGACATTTTAGGAACAAAATGCTAGTTATGTATGTAATTGTGGTTCTTTGAACACCAGATGAGTGCCAGGGGCGGTGTTTAAACACGTGCCAAGACCTTACCACAAAGTCATGTGGTGATGGTATGATGTAGTATTTTGCTATTAAATACCACCCTTAATGGCTATATGTCTCTGTACCCTTCTCATCAAAATCTTGTTGGTTTGGCATTGGTTAATCATCTGTATAACCTACACCAAGTTATCACAAGGAAACCAAGCACCCTAGGACTGACCAGAAGGGTACTCGGATATGACTGCTGCACTCATTCCCCTGGGAGAAACGATGTTGAATCTGGGAAAGGTGCATGGTTGAGGCCCAGGTAGCAATGGTGCAGACCTCCTGGAGAAGCACACCTCTGAGTACAACCCATAAGGAGGAGACGCTTCATGTAGAGTGGCATGTCATGGCAGGAGCTGGGTGTCCAGCCTGCCTGTTGGTCAAAGTGATGGCATCTACTACCCAGTCTTTGCTTAGATAGGGGGACTCCACACTGTTTCCGCTGTAACAGCTGATTGAATCACCACCACCCAGTACACATAGTACTGTAAGGTGTGCACTGGGCATAGCAAGGATAGCTCAGCTGGTTTCCCTTTATGGAATGCTATGAGTTCAACTAACTGGTTTACACCAGTGGGTGATATGACTTTAGGCTGGAACCTTGGGTTCAGCCACAGGGTTACGCCTGCATCATCTGGCCACAGGGTTTGCAGGGTGGACTTATAGATTTAGTATGTAGCTCCCACTCTTCTTTCCAAAGTGATTACCAGCAAGAAGGTGGTCTTTTTCTTCAGCTCAGCATCCTTTATATAGTCATAAGGGAAGGACCTCGGAGACTCTAACACAGGGGATGAAGTCCCATGCTGGAATCTTGGGGGAGAGCCAGGCACAAAGACATCTCACTTCCTTCAGAAGGGTTGTGACAAGTTTGAATGCCTAGTGAGACACCATCCATAGTGTTGTAGTGTGTAGTAATAGCTTctaatgtacatatacatatatacacatagatGGAGATTATTCTTTGTTTAGCAGTTTCTGCATAGAGGTTAGTACTTTAGGCACCAGAGAGATGTCCATATGATGTCCATTTGCTTCCATTTGAGAGCATACATGTCCCACGTACTAAGGGTTCttgtgtttaataatgtttcttGTACAGTGTGGCCATCGTTATTGGCCTGTGCTTTCCTCTATTCCCATAGATGTAGGTACCCTGACTGAGAAGGACTCTGTGGCCTGATTGTGATTCTGTTGGCAGAATCAATGGCAGAGGTGGAAAATCATACAGTAatccaccagccagctctgTGTAGGGTGAAGGCAAACATGTGCTTCTTCTAAGatacatgaagccagccaactgcatctttttgaactgctgctcatgctgcatcacagggcagcataatacactcagaggaaagtgctatttgccctcttctgcatacatgagctcacagaagcccAAGTTAACCTAGGGTCACTTTTATTTGAAAGGGgagaaaacattttacacataGCACACATATCTGCCTGCAGGAATTTGCTTGCAAAAAATATACTGTCTAAATCTGATTCTAAACTAAAAATTTGGGTCTAAATCTGCCAAACAAGTGTGCTGTGATTGAATCAGCATTCTCTGCATGAAATGTCCATTCTGACAGTTGCTTCTCTGATCGGTGCCGAGGCATTGAACACAGAACTGTTGCCTGTACTCTGCTTCTAGAAAGCTCAGGCAATGACTGCACAAGTGTGAGTCCTGCATTATAGCTTTATTCACTTGGAGCTGAGACTATGCATATAGTGGGAACCAGTGATTTGGTGGTTCACCACAAGGAGCACTAATCTGAGGGAAAGCCACCTGGAAACAATAGGTAGTGAAAACACAAGCCTGGGGATGTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481643 lncRNA downstream 20825 15052587 ~ 15052844 (-) True G405983
TU481642 lncRNA downstream 21481 15051955 ~ 15052188 (-) True G405982
TU481641 lncRNA downstream 21772 15051689 ~ 15051897 (-) True G405981
TU481636 lncRNA downstream 24491 15048721 ~ 15049178 (-) True G405976
TU481627 lncRNA downstream 54429 15018686 ~ 15019240 (-) True G405967
TU481714 lncRNA upstream 70411 15207201 ~ 15207531 (-) True G406054
TU481740 lncRNA upstream 120012 15256802 ~ 15257054 (-) True G406078
TU481741 lncRNA upstream 120935 15257725 ~ 15257945 (-) True G406079
TU481745 lncRNA upstream 134883 15271673 ~ 15272249 (-) True G406083
TU481748 lncRNA upstream 136218 15273008 ~ 15273429 (-) True G406086
XM_026928222.2 mRNA downstream 108858 14931143 ~ 14964811 (-) False cica
XM_026928225.2 mRNA downstream 108858 14931143 ~ 14964811 (-) False cica
XM_026928228.2 mRNA downstream 108858 14931143 ~ 14964811 (-) False cica
XM_026928226.2 mRNA downstream 108858 14931143 ~ 14964811 (-) False cica
XM_026928223.2 mRNA downstream 108858 14931143 ~ 14964811 (-) False cica
XM_026927874.2 mRNA upstream 28398 15165188 ~ 15206951 (-) True atp1a3a
TU481617 other downstream 59681 14967476 ~ 15013988 (-) True G405961
trnat-ugu_15 other downstream 527491 14546106 ~ 14546178 (-) True trnat-ugu_15
trnat-ugu_14 other downstream 530380 14543217 ~ 14543289 (-) True trnat-ugu_14
TU481171 other downstream 954011 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 989823 14081372 ~ 14083846 (-) True npy

Expression Profile