RNA id: XM_034301474.1


Basic Information

Item Value
RNA id XM_034301474.1
length 5646
RNA type mRNA
GC content 0.47
exon number 21
gene id epb41a
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14552044 ~ 14586242 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATACGTCATTGTCCACGTAGTGCCCTGTTTTTACTAGAACCAAAACACCGTGTGTGGAAAAGGGTTAAGATCGTTTTCCACCTGGCTCGCGCGTCTGAGGCTGAAACAGGAAGCTGGTTGATTCGGAGGTGTAGTGTGAGCTGCTGTTCCGCGTGGCTGAGGTAAAGGCGAGTGGTTACCATGACGACAGACAAAGCAAACAGTGGACAGAAGAAGCAGGTCTGTGAGCAGCAACAGGAAGATGGAGAGGCTGGAGTGCAAGAGCCTGACCCTATTGAGCCCCTTCAGGATGGACCCTCTGGCTCACCGCTGACTCCTGGAGGCTCAGAGGAGGGACAGCAGCCGAAACCACGACAGCACGCCTCGGGTGGCCGGGGCCTCTCACGCCTCTTCACCTCTTTGCTGAAACGCCGCTCACAGTGCTCAGAGGACGAGGGGGTCAAGGTGGAAAGAGgccaagagaaagagagtcacCCAGATCCCAAAGCTCCCATCGCAGACCCTGAACCTGAGCTACGCAATGAGGGGGAAGCAGCACTAGACCTGCACTCCATTAGCAGTTCTGAGAACCAGGTCAGAGTGGACCAAAAAGACACCATAGAGAGTGATGAATTGAAGGTGGAGAAGcgggaaaagaaacaaaagaaagatgagatgaataaaaacagagacaagaaaaagaaattagagaaaacaaaaagtgcagagaaaaaagaaaagaaagagaagaggaacAAGGACaagataaagaaagaagaaggaaagaaagagaaggagaatgaaacagaaaaagaagaaaaagaggtaGAGGAGCAGCCCAAGCCTGGGGAAGAGGAGACAGAGGCATGCAGGGCAGGGGAGGCGCCAAAGCCATTAAGCGAGGGGAGAAAGGAGAAGACTGCTGAGGAAGAAGTGAAGGCCCTTAAAGGTCAGCGCAGACCCAGGATCATGCACTGCAAAGTCACACTGCTGGATGACACACTGTTTGAGTGTGAACTGGatACATGGCTTGACTTCACAAAGGAGATTCGGAGACAAGTGCGAGggaTCAGCTATGACTTTACATTCAGTGTGAAGTTTTACCCACCTGATCCAGCCCAGTTATCTGAGGACATCACCagGTACTACGTGTGTCTTCAGCTGCGCAAAGACATCATGAGCGGCCGTTTGCCCTGCTCGTTTGTCACTCTAACCCTGCTGGGCTCTTATGCACTGCAGTCTGAACTGGGGGAGTATGACCCCGAGGTCCACGGCACAGACTACGCCAAGGAGCTCAGACTCATCCCAAACCAGACAAAGGAACTAGAGGACAAAGTCATGGAGCTCCATCGCACATACAGATCCATGAGTCCTGCTCAAGCTGACATGATGTTCCTGGAGAATGCTAAAAAGCTTTCTATGTATGGCGTAGATCTGCACCAGGCTAAGGATCTGAATGGGGTGGATATCATGCTGGGTGTCTGCTCCAGTGGTCTCATGGTTTATAAAGACAAGCTGAGGATTAATCGTTTTCCGTGGCCAAAAGTGCTGAAAGTCTCCTACAAACGTAGCAGCTTCTTCATCAAGATACGGCCATCTGAGCTGGAACTTTATGAGAGTGCCATTGGCTTCAAGCTGCCCAGTTACAGAGCTTCTAAGAAGCTttggaaagtgtgtgtagagCACCACACCTTTTTCAGGTTGACGTCTACTGAAGCTGCCACCACACCCAGAAAGCTCCTGGCCCTGGGCTCCAAGTTCAGGTATAGCGGGCGAACTCAGGCTCAAACACGGCAGGCTAGCTCCATGATCAACCGCCCTGCACCCCACTTCAAGCGCTTTGCCAGTAAGATGGCCTCTCACAGCTTAGACGGAGCCATGGTGTCCACCTTAAATAAGACAGCGCGTCCTGTCAGTGCTCCAATCATGTCTCCTATCTCCATTGGCGATACAGCTCCTTCTCACATGGTGACATCAGCCATACAGGTGAAGCACAAAGACGTGGTGACACCCACAAGTCCACCGTCTCACTCAGGAGAGAACAAGATTGAGGTAAAGGCAGAGAGCCGTGTGACTGGGACCTTCAAAATGCAAAGTGTTGCAGTTGAGGACACATCTGAGATCAAGATGGTTGTCCGGCGTGAGTGGCGGCACCGTGATGCCCTGGCAGTGACGACCGCTAATGGGGAGAAAATGAGTCAGCCCCCACAAGTGATGGTGCGAATGCGCAAGAAAAGAGCTAAGAAAATCGAGGGTGAGACTCTCTATACCAGACACAGCAACTTAATGTTGGAGGATCTGGATAAGACTCAGTCAGGGATTATGCGTCACCACAGCAGTATCAGCGAGCTCAAGCGCAGCTTCATGGAGTCCGTCCCAGAGCCACGGCCCAGCGAGTGGGACAAGCGCCTGTCCACACACTCACCTTTTCGCACAGCCAACATCAACGGCCAGATGCAGCCTGATGTGACTCCTGTAGTGAAGACGCATACAGTCACTGTTTCTGATGTGACCAACTCCCCGATCAGTGAGACTGCCACCAAAGAGGGTCCGATCCTGCACACTGAGACTAAGACCATTACATACGAATCTGCTCAACCCGATGAGAATGTAGGGATGCTGCTCAATGCACAAACCATTACCTCAGAGACTTTGAGCACTACAACCACTACGCAGATCACAAAGATGGTGAAAGGAGGAATCTCAGAAACCCGAATTGAGAAGAGGATTGTGATCACCGGTGACTCTGAAATTGACCATGATAAGGCTTTGGCTCAGGCGATAAAGGAAGCAAAGGAACAGCACCCAGACATGTCTGTTACTAAAGTAGTAGTGCATCAGGAAACTGAGATCACCCCAGAGTAAAATCTGAAACCCATACAGGAATCCATCCCTGATTCACGTACTCACCAGACTGCATGCTGAAGCTCCAGACTGCTTCTGCGGCCCCTCCCTCTGACAGGACAGCAGTGGAACGGCAGGATGAACACTACTGAAGACGCATCTCCCGGCTGTTCCAATGGATTCAACCTTTTACTGGAATCCACTTTTCCTATAGCATCATTTTTCTGtagcacctctctctctctctctctctctctctctctctctctccagatgTCCATATTGCAGCTGATTGTTTCATGTCAAATTGTTATAGCAAAGCAAATGAAGACATgacttttaatggttttaatgaaattttaaatgtagattTTAGTGGGTTTGATAAACAGTAgatttttaagacattttttaaacataaaacaattGTACTGTGGAGTTTGGGGTTTTTCACACGGGACAAAAGAGCAGCAGCATCTGAAATAAATTTTGgttctttgtcttcttttaaagaatattaattattgtgaacaagttcttcttcttcttcttactaATTATTATCATTGTAATGTCTTCTCTTTAGAttttcttcacttcactttccTTAACTTGAATTCTTTTGTCACAAATGGAATTGTTGTTTGTTGTGGCAGAAGGGTGCAGACAGTGAAACTGTATTCTATTTTTCTGTGTATCTTCAGttgttctttttgtgtgtgaacTCACCATTTTAGATTGCCTGCTCTTTTACATGCAGGTTTTATGCAGTCTAAGTTGTATTTTACCCCTCCTAAGCACCAAGTGCAGTGAACATCACCTGGATCGATTcttgtgcatgtgcacacacatccTGAGACCTTCCAACAGTCATGAAGTGAGGTATGATGTAGTATTTGCTATAAATAACATTGTCCTACAGCCTTCTTTCCACTACTTCTTCTTGTCTTGTAGACGTTGGACCACATTATGAAGCTTGTGACTATGTTCAGAGCTGCAGGTCCCCTGTCCTTCAACACTGGTGACAGTCTGTCATCTGCGGTGCAAGAGTGTAACTTTCCTACTTTTTCACCATCCACACAAAGTGAATGCTGCATTAGTTGGACTCCCTCACTAGCTTGCTAGCACTCTGTGAGTTATCTATGAACTGTCCTTGTTGCTCAGTACAGCACCCATCTGTTCCTGTGTGGAGTCTCACCCGGTGTTCTGAGTTTCCACTTCATCAGCAGTCTAGTGTCCTGCAGGCCTGTGAATATGTGCTGCTAAAGTATTCACATTCTCCCTCCTGgagcgtgtatgtgtgtatttctctTCCAAACTCCCACATATGCCACTCTCAGACAGACTAGTGGCTTGTGGTTACATACTACTCATGTCTTCAAATAGTGTTTCCCCCGCACCTTAACATACGCTGTCCTCAGTTAGCTGCCAAGTTAACTAATACACAGCTTGCAAAGCCATGCTCATGCTCGCAGTCGTGTAGCCCATCGCAGTATCCTCTGGAAGCCAGGGATGAGCATCATGTGGACACAGTCTTGGCATTGATCATCTTAAAGAAGCAGCTTTTGTTTCTGGTGGCCTTCACAGACAAAGCATGTCCAGATGTACGCTGCCTGAACAGAGAGTGCAGAAGCAATGATGAATTTCTAGTGAGATCATATAATATTGCTTTACGTATGGAATACCTGGGCAGTATGTTTGCTATTTTAGTTCTTGTATTGGAGCAAGCACTTCAATCTACAGATGTTGATCCCTCTGTTGGGGAGCTGGTTGAGGCCTTGCTCATAGCAGTGGAGCATCTGGGCTAGGATGGGGGGCTCTCCACTAATCTGGTTCATGTACAAAGCCAGGTGTCATTGGCACAGTCCGTGTTGTTGGCTGTGTGCAAATTAACTCTGCAAAATCTGCCCAGCAGGCACCTGAGCACTCCTCATTCACCCCATGGGACGGGCCCTAAACTGTGCCCCACACCACTAAGGAGTCACACAGAGTTTGCCCATTAAGGGCAGGGACTGTTGACGGGATGCTTCACAGCTGAAAATATTGCCACTGGGGAGCAACTGCATTAGATCTTTGGCTCTGATGACCTTTTTGCACGAGTAGAAACTCCTTTTCAGGTCTCATGGCCCTGACAGTGTCAGACCCCAACAAACTTGCCCCTGTAACCCAAGAAGCTCATTCCTTTTTGGATAGAGGAGCAATCGCAAAGGTATTGTCCAGGCCAAGTGGTTCTACTCTGTATTCTGTGTTGTTCAGAAGAAAGACAATGGTTTCTCTCCAATTCTTGATTTGACAAGGCCAGACAGGCCCCTAAAAGCCTTCTCCTTTCGCATACTAAGACTATTAAATGTAACTCATGCTGTACAGCCACAGGACTGGTTCACATCAGTGGATGCGCATGATGTACGTTTCCACATTCCCATCACCAGCAGAACACAAGCAACAAAAGATGCAGTTGAGGTGTGCCTTCAAAGGACAGGCACTCCAGTTCAGAGTTATCATTCAGAACTCGGAAGAAGGTTCCAGGGAATGATGGCAGTATTGTAACATTCTTCATGTCTTTGTTGGAAAGTCTCAGCATTTATGCACTAGGGCTTGAATGACTACTAATCTACTCAACCAATCATTCGAAAAAGTATTTGACTATTGGACTGTTTCTTCCATAGTTTAAGCAAGGCAGGTTTAAGCAGGATACTGCTACACTCTATGGCCGAAAtatgcacccctgaccatcacacacatgtgtggatcttctccaaactgttgccacaaagttggaagcacacaattgtattgaatgtctctgtgtgctgtagcattac

Function

GO: NA

KEGG:

id description
K06107 EPB41; erythrocyte membrane protein band 4.1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481349 lncRNA downstream 73405 14475480 ~ 14478639 (-) False tpbga
TU481315 lncRNA downstream 166394 14378892 ~ 14385650 (-) True G405707
TU481288 lncRNA downstream 222844 14256524 ~ 14329200 (-) True G405681
TU481546 lncRNA upstream 32407 14618649 ~ 14686310 (-) True G405900
TU481548 lncRNA upstream 33096 14619338 ~ 14654751 (-) True G405901
TU481553 lncRNA upstream 58611 14644853 ~ 14966111 (-) True G405906
TU481557 lncRNA upstream 101781 14688023 ~ 14720906 (-) True G405909
TU481565 lncRNA upstream 114026 14700268 ~ 14704312 (-) True G405917
XM_026927893.2 mRNA downstream 60781 14481937 ~ 14491263 (-) True tmem222b
XM_026927974.2 mRNA downstream 72967 14475476 ~ 14479077 (-) True tpbga
XM_026928453.2 mRNA downstream 81332 14460392 ~ 14470712 (-) False kdf1b
XM_026928370.2 mRNA upstream 12253 14598495 ~ 14614761 (-) True zbtb22b
XM_034301734.1 mRNA upstream 36439 14622681 ~ 14637333 (-) True ctdp1
XM_026928369.2 mRNA upstream 66102 14652344 ~ 14670040 (-) True daxx
XM_026928308.2 mRNA upstream 274012 14860254 ~ 14867598 (-) True gnb3b
XM_026928434.2 mRNA upstream 311368 14897610 ~ 14917917 (-) True si:ch211-264f5.6
trnat-ugu_15 other downstream 5866 14546106 ~ 14546178 (-) True trnat-ugu_15
trnat-ugu_14 other downstream 8755 14543217 ~ 14543289 (-) True trnat-ugu_14
TU481171 other downstream 432386 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 468198 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 790489 13759761 ~ 13761555 (-) True s100a11
TU481617 other upstream 381234 14967476 ~ 15013988 (-) True G405961

Expression Profile