RNA id: XM_034301480.1


Basic Information

Item Value
RNA id XM_034301480.1
length 1745
RNA type mRNA
GC content 0.42
exon number 13
gene id LOC113543852
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5268318 ~ 5276318 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acgctcgaccacgccccccACTGCCACATGACCGCTCCCTGCAATGTAGCTAATCAAAGCCCACTTCCTTTCTGTGAACGTGAATATCAGCAGGCACATGCAATAGTTCCTGATGTCACTTTAACCCTGACAGAGGGTAAGACTCGAAGGAAAAGTGCTAGTGAGGTAAGGAAATGgaaaacatttatgaaaatcGTGACGTCTCCAAAAGGAATGGTAGTGAAATCTGTCATTCTCCAACAGAAACAGCGGATAATGTTTATGCGAATACGAAGCAACAGTGTCCAAAGCCCAAAAAACGCACAGCTTCATCTCCATTTGGGTACAAGATCATCATATGTGCTCTTGGTCTCCTAATGCTTGGTGCTTTAGCATCACTCTGTGCTTTAGGGATCTTGTATCACAATAAAGTTGTTTCCACTGAGATATTAAGTGAGAAGTATGAGAATGCCACAGCCACACTGATGGTGCTAGGATACAAAGCCAAAGAAAAAGAGAGTATCTATGAAATGCAAAAGATGAAGCATCAGGAGCTCGTCTCTGCCTGCAACAagACAGAAAGACCGTATAAAGAACTGAAGGCAAAGCATCAGGAACTTGTCTCTGCATGCACTGagACACAACAGCTGTATAAAATGCTGAAGGAGAAGTATCAGCAAGTTCATGAACGTCTCTCTGCATGCAATGCAAATCAAAACTGCAGACACTGTGAGGAAGGATGGAAGTCTCTTGGTTTAAAGTGTTACAACTTCTCAACTAACAAACTGACCTGGACACAGAGTAGAGATTACTGTGTGGAGAAAGGAGGCCACCTGGTGATTATAACCAGCCAAACTGAACAGGATTTTGTATCTTCACAAATTGGAGAAACACACTGGATTGGCCTGAATGACCTGGAGACTGAGGGAAAGTGGATGTGGGTGAACAACCAGCCCTTAAAGACGGGTGTAACGTTCTGGTTTAGAGCTCCAGAGGGACCACGTGAGCCTGATAACTGGAAAAATGAGGACCCTTCTGGAGAGAACTGTGTCGCTCTGGGGGATGCAAATGGACCAAGAACAGAGGATCCTGATTATGTGAATATGCCGAAGTGGCGTCCAAAGCACGAAACATGCCCAGGTTCTGGTGTCACTGTCCAGAGGGCCTAAATGAGCCTGATAACTGGAAAACTGAGGACCCTTCTGGAGAGAACTGTGTCGCTCTGGGGCATGACAATGGTGACACACATAAATGGTTTGATGCTTCTTGTCGTACGCTGAAACAATTCATCTGTGAAAAGTAAAATACCGCTCTTTTCACTTGCATTTGTGCCTGCAAATACGTGTGTTTTTGAGAAACGAGGATAATTTTTGGCCATGCCACAGTTTGAGCCTGATTGATTGATATTCTAAAATAGCCAACATTAAATTTgcctatactttttttttaaataccaggTATCAAGGTAACCATTCACTTTTTGGACAAGAGTAAATCTTTTACATAATCcataacatttcacatttttttttcaacattttagaAGGTCTTGGATTTCAGACCTCTCTGCTTAAATggacagatgttttttttttatgtgattatCTAAGCTTGCGTAAACCTCTAGACCATTAGAAGATGGCATGAGATCATGTATGTAGATTTTCTCCCTCTGCCTTGTAGAAACTTCAACATTTAACAATATCTATTTAGAATAGTTTGACTATCATGAATCgccagtgttttatttccttgaaAACATGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404451.2 lncRNA downstream 26266 5240099 ~ 5242052 (-) True LOC113543905
TU475347 lncRNA downstream 131677 5128235 ~ 5136641 (-) False LOC113543870
TU475266 lncRNA downstream 232396 5030859 ~ 5035922 (-) True G400501
TU475282 lncRNA downstream 255523 5012187 ~ 5012795 (-) True G400517
TU475265 lncRNA downstream 349435 4911350 ~ 4918883 (-) True G400500
TU475417 lncRNA upstream 2585 5278903 ~ 5279314 (-) True G400622
TU475475 lncRNA upstream 94754 5371072 ~ 5380937 (-) True G400676
TU475654 lncRNA upstream 307237 5583555 ~ 5587381 (-) True G400826
TU475747 lncRNA upstream 535026 5811344 ~ 5812012 (-) True G400913
TU475958 lncRNA upstream 630829 5907147 ~ 5971174 (-) True G401106
XM_034301481.1 mRNA downstream 5045 5258555 ~ 5263273 (-) True LOC117596412
XM_034301482.1 mRNA downstream 10846 5251116 ~ 5257472 (-) True LOC113543750
XM_034301466.1 mRNA downstream 36267 5229267 ~ 5232051 (-) True LOC113543693
XM_034301733.1 mRNA downstream 47061 5215000 ~ 5221257 (-) False LOC113543887
XM_026942416.2 mRNA downstream 47061 5215000 ~ 5221257 (-) True LOC113543887
XM_026942435.2 mRNA upstream 4979 5281297 ~ 5285608 (-) True LOC113543899
XM_026942339.2 mRNA upstream 13512 5289830 ~ 5317844 (-) False ptp4a3a
XM_026942341.2 mRNA upstream 13512 5289830 ~ 5310243 (-) True ptp4a3a
XM_026942261.2 mRNA upstream 42685 5319003 ~ 5381426 (-) False rims3
XM_026942259.2 mRNA upstream 42685 5319003 ~ 5381426 (-) True rims3
XR_004577542.1 other downstream 259857 4961102 ~ 5008461 (-) False sept7a
XR_003403516.2 other downstream 1135396 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 1906492 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 1907364 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 1956886 3311361 ~ 3311432 (-) True trnae-cuc_42
TU475643 other upstream 311080 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 896670 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 1095332 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 1159669 6435987 ~ 6436048 (-) True LOC113543912
TU476702 other upstream 1985022 7261340 ~ 7276644 (-) False fndc5b

Expression Profile